Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_001416 | 41,716 | (T)5→9 | coding (636/873 nt) | NinC → | NinC protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41711 | 0 (0.000) | 30 (1.300) +TTTT |
20/80 | 0.0 | 100% | coding (631/873 nt) | NinC | NinC protein |
? | NC_001416 | 41712 = | 0 (0.000) | coding (632/873 nt) | NinC | NinC protein |
AACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACAT > NC_001416/41662‑41755 | aaCGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCgtg > 1:4495/1‑50 (MQ=255) aCGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGt > 1:2333‑M1/1‑49 (MQ=255) cGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtt < 1:2106‑M1/50‑3 (MQ=255) cAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttt < 1:2446‑M1/50‑5 (MQ=255) cAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttt < 1:848‑M1/50‑5 (MQ=255) aaaaaaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGttttt < 1:3836‑M1/50‑6 (MQ=255) aaaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttt > 1:3602‑M1/1‑42 (MQ=255) aaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGttttttttt > 1:2000‑M1/1‑41 (MQ=255) tCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaa > 1:660‑M1/1‑39 (MQ=255) ggACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatg > 1:4975‑M1/1‑37 (MQ=255) cctgcCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgagg > 1:1102‑M1/3‑34 (MQ=255) ccTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgggtcatc < 1:2314‑M1/50‑21 (MQ=255) tGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggttatca < 1:3862‑M1/50‑23 (MQ=255) gCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcac > 1:1552‑M1/1‑27 (MQ=255) cAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacg < 1:4917‑M1/50‑25 (MQ=255) aaaatgaGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacggg < 1:4950‑M1/47‑27 (MQ=255) aaGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacggg < 1:3359‑M1/50‑27 (MQ=255) tatGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacgggat < 1:2017‑M1/49‑29 (MQ=255) gATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacgggaa > 1:160‑M1/1‑22 (MQ=255) gaggagGGATTGCAGCGTGtttttttttaatgggtcatcacggtatccca > 1:4736‑M1/1‑19 (MQ=255) gaggagGGATTGCAGCGTGtttttttttaatgaggtcatcacgggatccc < 1:2102‑M1/50‑32 (MQ=255) aggaggGATTGCAGCGTGtttttttttaatgaggtcatcacgggatccca > 1:3880‑M1/1‑18 (MQ=255) ggaggGATTGAAGCGTGtttttttttaatgaggtcatcacgggatcccat < 1:4232‑M1/50‑34 (MQ=255) gaggGATTGCAGCGTGtttttttttgaatgaggtcatcacgggatcccat > 1:3227‑M1/1‑16 (MQ=255) ggATTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgc > 1:296‑M1/1‑13 (MQ=255) aTTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgt < 1:4850‑M1/50‑40 (MQ=255) aTTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgt < 1:4592‑M1/50‑40 (MQ=255) ttGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtg < 1:914‑M1/50‑41 (MQ=255) tGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtga > 1:1707‑M1/1‑9 (MQ=255) cAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtgacg < 1:3541‑M1/50‑44 (MQ=255) aGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtgacgg < 1:533‑M1/50‑45 (MQ=255) | AACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACAT > NC_001416/41662‑41755 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |