Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 41,601 | (AAC)2→1 | coding (521‑523/873 nt) | NinC → | NinC protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 41601 | 41603 | 3 | 29 [0] | [0] 28 | NinC | NinC protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41600 | 0 (0.000) | 23 (1.000) | 19/90 | 0.0 | 100% | coding (520/873 nt) | NinC | NinC protein |
? | NC_001416 | 41604 = | 0 (0.000) | coding (524/873 nt) | NinC | NinC protein |
TGAACTGTCAGACTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTG > NC_001416/41551‑41649 | tGAACTGTCAGACTTT‑GAGAAGGAAGATATTCTCGCATGGTGGAAGCAAC > 1:727‑M1/1‑50 (MQ=255) cTGTCAGACTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcatt > 1:2919‑M1/1‑46 (MQ=255) gTCAGACTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcattcg > 1:2683‑M1/1‑44 (MQ=255) cAGACTTTGGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcattcga < 1:2944‑M1/50‑8 (MQ=255) aCTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcattcgatttg > 1:1852‑M1/1‑39 (MQ=255) cTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcattcgatttgc < 1:1426‑M1/50‑13 (MQ=255) cTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACcattcgatttgc > 1:3385‑M1/1‑38 (MQ=255) aggaagATATCCTCGCATGGTGGAAGCAACcattcgatttgcaaataccg < 1:4972‑M1/50‑21 (MQ=255) ggtagataTCCTCGCATGGTGGAAGCAACcattcgatttgcaaataccgg < 1:3597‑M1/47‑22 (MQ=255) agATATCCTCGCATGGTGGAAGCAACcattcgatttgcaaataccggaac < 1:2288‑M1/50‑25 (MQ=255) gATACCCTCGCATGGTGGAAGCAACcattcgatttgcaaataccggaaca < 1:4834‑M1/50‑26 (MQ=255) atatCCTCGCATGGTGGAAGCAACcattcgatttgcaaatactggaacat > 1:1043‑M1/1‑24 (MQ=255) atatCCTCGCAT‑GTGGAAGCAACcattcgatttgcaaatacggaacatct > 1:604‑M1/1‑23 (MQ=255) atCCTCGCATGGTGGAAGCAACcattcgatttgcaaataccggaacatct > 1:3580‑M1/1‑22 (MQ=255) cTCGCATGGTGGAAGCAACcattcgatttgcaaataccggaacatctcgg > 1:3982‑M1/1‑19 (MQ=255) cGCATGGTGGAAGCAACcattcgatttgcaaataccggaacatctcggta > 1:1076‑M1/1‑17 (MQ=255) gCATGGTGGAAGCAACcattcgatttgcaaataccggaacatctcggtaa > 1:4349‑M1/1‑16 (MQ=255) gCATGGTGGAAGCAACcattcgatttgcaaataccggaaaatctcggtaa > 1:419‑M1/1‑16 (MQ=255) aTGGTGGAAGCAACcattcgatttgcaaataccggaacatctcggtaact < 1:648‑M1/50‑37 (MQ=255) tggtggCAGCAACcattcgatttgcaaataccggaacatctcggtaactg < 1:2513‑M1/50‑38 (MQ=255) tggtggAAGCAACcattcgatttgcaaataccggaacatctcggtaactg < 1:3874‑M1/50‑38 (MQ=255) gAAGCAACcattcgatttgcaaataccggaacatctcggtaactgcatat > 1:1257‑M1/1‑8 (MQ=255) aaGCAACcattcgatttgcaaataccggaacatctcggtaactgcgtatt > 1:4347‑M1/1‑7 (MQ=255) aGCAACcattcgatttgcaaataccggaacatctcggtaactgcatattc > 1:901‑M1/1‑6 (MQ=255) cAACcattcgatttgcaaataccggaacgtctcggtaactgcatattctg < 1:2162‑M1/50‑47 (MQ=255) cAACcattcgatttgcaaataccggaaacatctcggtaactgcatattct > 1:1668‑M1/1‑4 (MQ=255) aCcattcgatttgcaaataccggaacatctcggtaactgcatattctgca > 1:3156‑M1/1‑2 (MQ=255) ccattcgatttgcaaataccggaacatctcggtaactgcatattctgcat < 1:4063‑M1/50‑50 (MQ=255) ccattcgatttgcaaataccggaacatctcggtaactgcatattctgcat < 1:849‑M1/50‑50 (MQ=255) | TGAACTGTCAGACTTT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTG > NC_001416/41551‑41649 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |