Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,405 (GCG)2→5 coding (325/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 41398 =1 (0.040)27 (1.100)
+C
22/96 0.0 91.7% coding (318/873 nt) NinC NinC protein
?NC_001416 = 41405 4 (0.160)coding (325/873 nt) NinC NinC protein

TTTGGTGAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_001416/41446‑41398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCCGACGTATGGAGTGCCATATTTCTTTACCATATCGATAAATGG  <  NC_001416/41405‑41357
                                                  |                                                  
TTTGGTGAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGC                                                    >  1:4791/1‑50
     TGAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCG                                               <  1:2561/50‑1
      GAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGC                                              <  1:4144/50‑1
      GAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGC                                              <  1:3777/50‑1
          GGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCAAC                                          >  1:4617/1‑50
           GAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGAac                                         >  1:3911/1‑48
           GAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACG                                         <  1:649/50‑1
           GAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACG                                         >  1:668/1‑50
            AACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGT                                        <  1:4557/50‑1
              cgtGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTAT                                      <  1:1266/47‑1
              CGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTAT                                      <  1:4410/50‑1
                 GTTTTAATCTGTCCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGG                                    <  1:2951/50‑1
                    TTAATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTG                                <  1:3895/50‑1
                      AATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCC                              <  1:3386/50‑1
                       ATCTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCA                             <  1:2014/50‑1
                         CTGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATA                           <  1:1703/50‑1
                          TGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCCTAT                          >  1:1156/1‑50
                          TGTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATAg                          <  1:942/50‑2
                           GTCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGTCATATT                         >  1:4437/1‑50
                                 TGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTT                   <  1:84/50‑1
                                  GCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTTA                  <  1:2280/50‑1
                                  GCAGAACGCGCCGCCGCCGCCGCCGACGTATGAGTGCCATATTTCTTTAC                 <  1:1192/50‑1
                                  GCAGAACGCGCCGCCGCCGCCGCCGACGTATGAGTGCCATATTTCTTTAC                 >  1:1284/1‑50
                                   CAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTTAC                 >  1:2105/1‑50
                                     GAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTTACCA               <  1:3436/50‑1
                                     GAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTTACCA               <  1:4215/50‑1
                                      AACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCTTTACCAT              <  1:1762/50‑1
                                                 GCCGCCGCCGACGTATGGAGTGCCATATTTCTGTTACCATATCGATAAAT    <  1:577/50‑1
                                                  CCGCCGCCGACGTATGGAGTGCCATATTTCTTTACCATATCGATAAATGG  >  1:2204/1‑50
                                                  |                                                  
TTTGGTGAAGGGAACGAGTTTTAATCTGTCAGTGCAGAACGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_001416/41446‑41398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCCGACGTATGGAGTGCCATATTTCTTTACCATATCGATAAATGG  <  NC_001416/41405‑41357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.