Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 41,601 | (AAC)2→1 | coding (521‑523/873 nt) | NinC → | NinC protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 41601 | 41603 | 3 | 29 [0] | [0] 28 | NinC | NinC protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41600 | 0 (0.000) | 23 (1.000) | 19/90 | 0.0 | 100% | coding (520/873 nt) | NinC | NinC protein |
? | NC_001416 | 41604 = | 0 (0.000) | coding (524/873 nt) | NinC | NinC protein |
TGCTGAACTGTCAGACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/41548‑41600 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT > NC_001416/41604‑41652 TGCTGAACTGTCAGACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGC > 1:2942/1‑50 TGAACTGTCAGACTTGT‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAA < 1:4965/50‑1 TGAACTGTCAGACTT‑T‑GAGAAGGAAGATATTCTCGCATGGTGGAAGCAAC > 1:727/1‑50 CTGTCAGACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATT > 1:2919/1‑50 GTCAGACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCG > 1:2683/1‑50 CAGACTT‑TGGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGA < 1:2944/50‑1 ACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTG > 1:1852/1‑50 CTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGC < 1:1426/50‑1 CTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGC > 1:3385/1‑50 AGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCG < 1:4972/50‑1 ggtAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG < 1:3597/47‑1 AGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AAC < 1:2288/50‑1 GATACCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACA < 1:4834/50‑1 ATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACTGG‑AACAT > 1:1043/1‑50 ATATCCTCGCAT‑GTGGAAGCAACCATTCGATTTGCAAATA‑CGG‑AACATCT > 1:604/1‑50 ATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCT > 1:3580/1‑50 CTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGG > 1:3982/1‑50 CGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTA > 1:1076/1‑50 GCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAA > 1:4349/1‑50 GCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AAAATCTCGGTAA > 1:419/1‑50 ATGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACT < 1:648/50‑1 TGGTGGCAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTG < 1:2513/50‑1 TGGTGGAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTG < 1:3874/50‑1 GAAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATAT > 1:1257/1‑50 AAGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCGTATT > 1:4347/1‑50 AGCAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTC > 1:901/1‑50 CAACCATTCGATTTGCAAATACCGGAAACATCTCGGTAACTGCATATTCT > 1:1668/1‑50 CAACCATTCGATTTGCAAATACCGG‑AACGTCTCGGTAACTGCATATTCTG < 1:2162/50‑1 ACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCA > 1:3156/1‑50 CCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT < 1:4063/50‑1 CCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT < 1:849/50‑1 TGCTGAACTGTCAGACTT‑T‑GAGAAGGAAGATATCCTCGCATGGTGGAAGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/41548‑41600 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT > NC_001416/41604‑41652 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |