Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,716 (T)5→9 coding (636/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 417110 (0.000)30 (1.300)
+TTTT
20/80 0.0 100% coding (631/873 nt) NinC NinC protein
?NC_001416 41712 = 0 (0.000)coding (632/873 nt) NinC NinC protein

AACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACAT  >  NC_001416/41662‑41755
                                                 |                                            
aaCGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCgtg                                              >  1:4495/1‑50 (MQ=255)
 aCGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGt                                             >  1:2333‑M1/1‑49 (MQ=255)
  cGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtt                                            <  1:2106‑M1/50‑3 (MQ=255)
    cAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttt                                          <  1:2446‑M1/50‑5 (MQ=255)
    cAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttt                                          <  1:848‑M1/50‑5 (MQ=255)
     aaaaaaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGttttt                                         <  1:3836‑M1/50‑6 (MQ=255)
        aaaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttt                                      >  1:3602‑M1/1‑42 (MQ=255)
         aaTCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGttttttttt                                     >  1:2000‑M1/1‑41 (MQ=255)
           tCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaa                                   >  1:660‑M1/1‑39 (MQ=255)
             ggACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatg                                 >  1:4975‑M1/1‑37 (MQ=255)
                cctgcCTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgagg                              >  1:1102‑M1/3‑34 (MQ=255)
                    ccTGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgggtcatc                          <  1:2314‑M1/50‑21 (MQ=255)
                      tGCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggttatca                        <  1:3862‑M1/50‑23 (MQ=255)
                       gCAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcac                       >  1:1552‑M1/1‑27 (MQ=255)
                        cAAAGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacg                      <  1:4917‑M1/50‑25 (MQ=255)
                          aaaatgaGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacggg                    <  1:4950‑M1/47‑27 (MQ=255)
                          aaGATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacggg                    <  1:3359‑M1/50‑27 (MQ=255)
                            tatGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacgggat                  <  1:2017‑M1/49‑29 (MQ=255)
                            gATGAGGAGGGATTGCAGCGTGtttttttttaatgaggtcatcacgggaa                  >  1:160‑M1/1‑22 (MQ=255)
                               gaggagGGATTGCAGCGTGtttttttttaatgggtcatcacggtatccca               >  1:4736‑M1/1‑19 (MQ=255)
                               gaggagGGATTGCAGCGTGtttttttttaatgaggtcatcacgggatccc               <  1:2102‑M1/50‑32 (MQ=255)
                                aggaggGATTGCAGCGTGtttttttttaatgaggtcatcacgggatccca              >  1:3880‑M1/1‑18 (MQ=255)
                                 ggaggGATTGAAGCGTGtttttttttaatgaggtcatcacgggatcccat             <  1:4232‑M1/50‑34 (MQ=255)
                                  gaggGATTGCAGCGTGtttttttttgaatgaggtcatcacgggatcccat            >  1:3227‑M1/1‑16 (MQ=255)
                                     ggATTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgc         >  1:296‑M1/1‑13 (MQ=255)
                                       aTTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgt       <  1:4850‑M1/50‑40 (MQ=255)
                                       aTTGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgt       <  1:4592‑M1/50‑40 (MQ=255)
                                        ttGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtg      <  1:914‑M1/50‑41 (MQ=255)
                                         tGCAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtga     >  1:1707‑M1/1‑9 (MQ=255)
                                           cAGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtgacg   <  1:3541‑M1/50‑44 (MQ=255)
                                            aGCGTGtttttttttaatgaggtcatcacgggatcccatgtgcgtgacgg  <  1:533‑M1/50‑45 (MQ=255)
                                                 |                                            
AACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACAT  >  NC_001416/41662‑41755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.