Mercurial > repos > iuc > breseq
comparison test-data/report.html @ 3:0d18a3ba2d1c draft default tip
"planemo upload commit 6e869b3e13ed7b012b270f14fce812613642e5f2"
| author | iuc |
|---|---|
| date | Mon, 04 Apr 2022 08:30:52 +0000 |
| parents | 82fb5e3bb93e |
| children |
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| 2:82fb5e3bb93e | 3:0d18a3ba2d1c |
|---|---|
| 79 | 79 |
| 80 <!-- Item Lines --> | 80 <!-- Item Lines --> |
| 81 | 81 |
| 82 <!-- Print The Table Row --> | 82 <!-- Print The Table Row --> |
| 83 <tr class="normal_table_row"> | 83 <tr class="normal_table_row"> |
| 84 <td align="center"><a href="evidence/JC_11.html">JC</a></td><!-- Evidence --> | 84 <td align="center"><a href="evidence/JC_9.html">JC</a></td><!-- Evidence --> |
| 85 <td align="right">41,405</td><!-- Position --> | 85 <td align="right">41,405</td><!-- Position --> |
| 86 <td align="center">(GCG)<sub>2→5</sub></td><!-- Cell Mutation --> | 86 <td align="center">(GCG)<sub>2→5</sub></td><!-- Cell Mutation --> |
| 87 <td align="center">coding (325/873 nt)</td> | 87 <td align="center">coding (325/873 nt)</td> |
| 88 <td align="center"><i>NinC</i> →</td> | 88 <td align="center"><i>NinC</i> →</td> |
| 89 <td align="left">NinC protein</td> | 89 <td align="left">NinC protein</td> |
| 90 </tr> | 90 </tr> |
| 91 <!-- End Table Row --> | 91 <!-- End Table Row --> |
| 92 | 92 |
| 93 <!-- Print The Table Row --> | 93 <!-- Print The Table Row --> |
| 94 <tr class="normal_table_row"> | 94 <tr class="normal_table_row"> |
| 95 <td align="center"><a href="evidence/MC_PLOT_8.html">MC</a> <a href="evidence/JC_12.html">JC</a></td><!-- Evidence --> | 95 <td align="center"><a href="evidence/MC_PLOT_6.html">MC</a> <a href="evidence/JC_10.html">JC</a></td><!-- Evidence --> |
| 96 <td align="right">41,601</td><!-- Position --> | 96 <td align="right">41,601</td><!-- Position --> |
| 97 <td align="center">(AAC)<sub>2→1</sub></td><!-- Cell Mutation --> | 97 <td align="center">(AAC)<sub>2→1</sub></td><!-- Cell Mutation --> |
| 98 <td align="center">coding (521‑523/873 nt)</td> | 98 <td align="center">coding (521‑523/873 nt)</td> |
| 99 <td align="center"><i>NinC</i> →</td> | 99 <td align="center"><i>NinC</i> →</td> |
| 100 <td align="left">NinC protein</td> | 100 <td align="left">NinC protein</td> |
| 101 </tr> | 101 </tr> |
| 102 <!-- End Table Row --> | 102 <!-- End Table Row --> |
| 103 | 103 |
| 104 <!-- Print The Table Row --> | 104 <!-- Print The Table Row --> |
| 105 <tr class="normal_table_row"> | 105 <tr class="normal_table_row"> |
| 106 <td align="center"><a href="evidence/JC_13.html">JC</a></td><!-- Evidence --> | 106 <td align="center"><a href="evidence/SNP_3.html">RA</a></td><!-- Evidence --> |
| 107 <td align="right">41,716</td><!-- Position --> | |
| 108 <td align="center">(T)<sub>5→9</sub></td><!-- Cell Mutation --> | |
| 109 <td align="center">coding (636/873 nt)</td> | |
| 110 <td align="center"><i>NinC</i> →</td> | |
| 111 <td align="left">NinC protein</td> | |
| 112 </tr> | |
| 113 <!-- End Table Row --> | |
| 114 | |
| 115 <!-- Print The Table Row --> | |
| 116 <tr class="normal_table_row"> | |
| 117 <td align="center"><a href="evidence/MC_PLOT_9.html">MC</a> <a href="evidence/JC_14.html">JC</a></td><!-- Evidence --> | |
| 118 <td align="right">44,075</td><!-- Position --> | |
| 119 <td align="center">(CAAA)<sub>2→1</sub></td><!-- Cell Mutation --> | |
| 120 <td align="center">coding (190‑193/624 nt)</td> | |
| 121 <td align="center"><i>Q</i> →</td> | |
| 122 <td align="left">late gene regulator</td> | |
| 123 </tr> | |
| 124 <!-- End Table Row --> | |
| 125 | |
| 126 <!-- Print The Table Row --> | |
| 127 <tr class="normal_table_row"> | |
| 128 <td align="center"><a href="evidence/SNP_5.html">RA</a></td><!-- Evidence --> | |
| 129 <td align="right">47,317</td><!-- Position --> | 107 <td align="right">47,317</td><!-- Position --> |
| 130 <td align="center">N→T</td><!-- Cell Mutation --> | 108 <td align="center">N→T</td><!-- Cell Mutation --> |
| 131 <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font> (<font class="mutation_in_codon">N</font>TC→<font class="mutation_in_codon">A</font>TC) </span></td> | 109 <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font> (<font class="mutation_in_codon">N</font>TC→<font class="mutation_in_codon">A</font>TC) </span></td> |
| 132 <td align="center"><i>lambdap78</i> ←</td> | 110 <td align="center"><i>lambdap78</i> ←</td> |
| 133 <td align="left">putative envelope protein</td> | 111 <td align="left">putative envelope protein</td> |
| 145 <th>reads→</th> | 123 <th>reads→</th> |
| 146 <th>gene</th> | 124 <th>gene</th> |
| 147 <th width="100%">description</th> | 125 <th width="100%">description</th> |
| 148 </tr> | 126 </tr> |
| 149 <tr> | 127 <tr> |
| 128 <td><a href="evidence/MC_SIDE_1_5.html">*</a></td> | |
| 129 <td><a href="evidence/MC_SIDE_2_5.html">*</a></td> | |
| 130 <td><a href="evidence/MC_PLOT_5.html">÷</a></td> | |
| 131 <td>NC_001416</td> | |
| 132 <td align="right">1</td> | |
| 133 <td align="right">38811</td> | |
| 134 <td align="right">38811</td> | |
| 135 <td align="center">NA [0]</td> | |
| 136 <td align="center">[1] 2</td> | |
| 137 <td align="center"><i>nu1–[O]</i></td> | |
| 138 <td align="left">nu1,A,W,B,C,nu3,D,E,Fi,Fii,Z,U,V,G,T,H,M,L,K,I,J,lom,orf‑401,orf206b,orf‑314,orf‑194,ea47,ea31,ea59,int,xis,lambdap35,ea8.5,ea22,orf61,orf63,orf60a,exo,bet,gam,kil,cIII,ea10,ral,orf28,lambdap48,N,rexb,rexa,cI,cro,cII,[O]</td> | |
| 139 </tr> | |
| 140 <tr> | |
| 150 <td><a href="evidence/MC_SIDE_1_7.html">*</a></td> | 141 <td><a href="evidence/MC_SIDE_1_7.html">*</a></td> |
| 151 <td><a href="evidence/MC_SIDE_2_7.html">*</a></td> | 142 <td><a href="evidence/MC_SIDE_2_7.html">*</a></td> |
| 152 <td><a href="evidence/MC_PLOT_7.html">÷</a></td> | 143 <td><a href="evidence/MC_PLOT_7.html">÷</a></td> |
| 153 <td>NC_001416</td> | 144 <td>NC_001416</td> |
| 154 <td align="right">1</td> | 145 <td align="right">48305</td> |
| 155 <td align="right">38810</td> | 146 <td align="right">48312</td> |
| 156 <td align="right">38810</td> | 147 <td align="right">8</td> |
| 157 <td align="center">NA [0]</td> | 148 <td align="center">2 [1]</td> |
| 158 <td align="center">[10] 13</td> | 149 <td align="center">[1] 2</td> |
| 159 <td align="center"><i>nu1–[O]</i></td> | 150 <td align="center"><i>lambdap79/–</i></td> |
| 160 <td align="left">nu1,A,W,B,C,nu3,D,E,Fi,Fii,Z,U,V,G,T,H,M,L,K,I,J,lom,orf‑401,orf206b,orf‑314,orf‑194,ea47,ea31,ea59,int,xis,lambdap35,ea8.5,ea22,orf61,orf63,orf60a,exo,bet,gam,kil,cIII,ea10,ral,orf28,lambdap48,N,rexb,rexa,cI,cro,cII,[O]</td> | 151 <td align="left">hypothetical protein/–</td> |
| 161 </tr> | 152 </tr> |
| 162 <tr> | 153 <tr> |
| 163 <td><a href="evidence/MC_SIDE_1_10.html">*</a></td> | 154 <td><a href="evidence/MC_SIDE_1_8.html">*</a></td> |
| 164 <td><a href="evidence/MC_SIDE_2_10.html">*</a></td> | 155 <td><a href="evidence/MC_SIDE_2_8.html">*</a></td> |
| 165 <td><a href="evidence/MC_PLOT_10.html">÷</a></td> | 156 <td><a href="evidence/MC_PLOT_8.html">÷</a></td> |
| 166 <td>NC_001416</td> | 157 <td>NC_001416</td> |
| 167 <td align="right">48475</td> | 158 <td align="right">48485</td> |
| 168 <td align="right">48502</td> | 159 <td align="right">48502</td> |
| 169 <td align="right">28</td> | 160 <td align="right">18</td> |
| 170 <td align="center">12 [10]</td> | 161 <td align="center">2 [1]</td> |
| 171 <td align="center">[0] NA</td> | 162 <td align="center">[0] NA</td> |
| 172 <td align="center"><i>lambdap79/–</i></td> | 163 <td align="center"><i>lambdap79/–</i></td> |
| 173 <td align="left">hypothetical protein/–</td> | 164 <td align="left">hypothetical protein/–</td> |
| 174 </tr> | 165 </tr> |
| 175 </table> | 166 </table> |