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comparison test-data/gdtoolsout.html @ 0:f848a7f97332 draft

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"planemo upload commit fadaff2d55736bf8c580541d6089c83cd4106a1f"
author iuc
date Thu, 31 Oct 2019 19:40:40 -0400
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children 0d18a3ba2d1c
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-1:000000000000 0:f848a7f97332
1 <!DOCTYPE html
2 PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
3 "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
4 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
5 <html>
6 <head>
7 <title>Mutation Comparison</title>
8 <style type = "text/css">
9 body {font-family: sans-serif; font-size: 11pt;}
10 th {background-color: rgb(0,0,0); color: rgb(255,255,255);}
11 table {background-color: rgb(1,0,0); color: rgb(0,0,0);}
12 tr {background-color: rgb(255,255,255);}
13 .mutation_in_codon {color:red; text-decoration : underline;}
14 .snp_type_synonymous{color:green;}
15 .snp_type_nonsynonymous{color:blue;}
16 .snp_type_nonsense{color:red;}
17 .mutation_header_row {background-color: rgb(0,130,0);}
18 .read_alignment_header_row {background-color: rgb(255,0,0);}
19 .missing_coverage_header_row {background-color: rgb(0,100,100);}
20 .new_junction_header_row {background-color: rgb(0,0,155);}
21 .copy_number_header_row {background-color: rgb(153,102,0);}
22 .alternate_table_row_0 {background-color: rgb(255,255,255);}
23 .alternate_table_row_1 {background-color: rgb(235,235,235);}
24 .gray_table_row {background-color: rgb(230,230,245);}
25 .polymorphism_table_row {background-color: rgb(160,255,160);}
26 .highlight_table_row {background-color: rgb(192,255,255);}
27 .reject_table_row {background-color: rgb(255,200,165);}
28 .user_defined_table_row {background-color: rgb(255,255,0);}
29 .information_table_row {background-color: rgb(200,255,255);}
30 .junction_repeat {background-color: rgb(255,165,0)}
31 .junction_gene {}
32 .hidden { display: none; }
33 .unhidden { display: block; }
34
35 </style>
36 <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
37 <script type="text/javascript">
38 function hideTog(divID) {
39 var item = document.getElementById(divID);
40 if (item) {
41 item.className=(item.className=='hidden')?'unhidden':'hidden';
42 }
43 }
44 function showTog(butID) {
45 var button = document.getElementById(butID);
46 if (button) {
47 button.value=(button.value=='Show')?'Hide':'Show';
48 }
49 }
50 </script>
51
52 </head>
53 <body>
54 <!--Output Html_Mutation_Table_String-->
55 <table border="0" cellspacing="1" cellpadding="3">
56 <tr><th colspan="5" align="left" class="mutation_header_row">Predicted mutations</th></tr><tr>
57 <th>position</th>
58 <th>mutation</th>
59 <th>annotation</th>
60 <th>gene</th>
61 <th width="100%">description</th>
62 </tr>
63
64 <!-- Item Lines -->
65
66 <!-- Print The Table Row -->
67 <tr class="normal_table_row">
68 <td align="right">41,405</td><!-- Position -->
69 <td align="center">(GCG)<sub>2&rarr;5</sub></td><!-- Cell Mutation -->
70 <td align="center">coding&nbsp;(325/873&nbsp;nt)</td>
71 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
72 <td align="left">NinC protein</td>
73 </tr>
74 <!-- End Table Row -->
75
76 <!-- Print The Table Row -->
77 <tr class="normal_table_row">
78 <td align="right">41,601</td><!-- Position -->
79 <td align="center">(AAC)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
80 <td align="center">coding&nbsp;(521&#8209;523/873&nbsp;nt)</td>
81 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
82 <td align="left">NinC protein</td>
83 </tr>
84 <!-- End Table Row -->
85
86 <!-- Print The Table Row -->
87 <tr class="normal_table_row">
88 <td align="right">41,716</td><!-- Position -->
89 <td align="center">(T)<sub>5&rarr;9</sub></td><!-- Cell Mutation -->
90 <td align="center">coding&nbsp;(636/873&nbsp;nt)</td>
91 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
92 <td align="left">NinC protein</td>
93 </tr>
94 <!-- End Table Row -->
95
96 <!-- Print The Table Row -->
97 <tr class="normal_table_row">
98 <td align="right">44,075</td><!-- Position -->
99 <td align="center">(CAAA)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
100 <td align="center">coding&nbsp;(190&#8209;193/624&nbsp;nt)</td>
101 <td align="center"><i>Q</i>&nbsp;&rarr;</td>
102 <td align="left">late gene regulator</td>
103 </tr>
104 <!-- End Table Row -->
105
106 <!-- Print The Table Row -->
107 <tr class="normal_table_row">
108 <td align="right">47,317</td><!-- Position -->
109 <td align="center">N&rarr;T</td><!-- Cell Mutation -->
110 <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font>&nbsp;(<font class="mutation_in_codon">N</font>TC&rarr;<font class="mutation_in_codon">A</font>TC)&nbsp;</span></td>
111 <td align="center"><i>lambdap78</i>&nbsp;&larr;</td>
112 <td align="left">putative envelope protein</td>
113 </tr>
114 <!-- End Table Row -->
115 </table></body></html>