Mercurial > repos > iuc > breseq
diff breseq.xml @ 3:0d18a3ba2d1c draft default tip
"planemo upload commit 6e869b3e13ed7b012b270f14fce812613642e5f2"
| author | iuc |
|---|---|
| date | Mon, 04 Apr 2022 08:30:52 +0000 |
| parents | 82fb5e3bb93e |
| children |
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--- a/breseq.xml Wed Apr 07 12:17:45 2021 +0000 +++ b/breseq.xml Mon Apr 04 08:30:52 2022 +0000 @@ -1,13 +1,14 @@ -<tool id="breseq" name="breseq" version="@PACKAGE_VERSION@+@GALAXY_VERSION@"> - +<tool id="breseq" name="breseq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>find mutations in haploid microbial genomes</description> - + <xrefs> + <xref type="bio.tools">breseq</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.35.5">breseq</requirement> + <requirement type="package" version="@TOOL_VERSION@">breseq</requirement> <requirement type="package" version="1.32">tar</requirement> </requirements> @@ -142,7 +143,7 @@ <param name="predict_junctions" type="boolean" truevalue="" falsevalue="--no-junction-prediction" checked="true" label="Predict Junctions" help="Predict new sequence junctions (default). --no-junction-prediction is supplied if 'No' is selected. Otherwise, there is no flag." /> <section name="output_options" title="Output Options" expanded="false"> - <param name="formats" type="select" multiple="true" optional="false" display="checkboxes" label="Output Formats"> + <param name="formats" type="select" multiple="true" optional="false" label="Output Formats"> <option value="gd" selected="true">Variants (GenomeDiff)</option> <option value="html">Variant Report (Webpage)</option> <option value="zip">All Variant Results (Gzip)</option> @@ -267,7 +268,7 @@ </repeat> <conditional name="run"> <param name="mode" value="annotate" /> - <param name="gds" value="gdout.txt" /> + <param name="gds" value="gdout.txt" ftype="tabular" /> <section name="output_options"> <param name="formats" value="html" /> </section>