Mercurial > repos > iuc > breseq
diff breseq.xml @ 2:82fb5e3bb93e draft
"planemo upload commit 9f3f6fbbe2653d4c42818a89d6897ddaef6706b1"
author | iuc |
---|---|
date | Wed, 07 Apr 2021 12:17:45 +0000 |
parents | 85c57cc9b558 |
children | 0d18a3ba2d1c |
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--- a/breseq.xml Mon Dec 02 04:51:27 2019 -0500 +++ b/breseq.xml Wed Apr 07 12:17:45 2021 +0000 @@ -7,7 +7,7 @@ </macros> <requirements> - <requirement type="package" version="0.34.0">breseq</requirement> + <requirement type="package" version="0.35.5">breseq</requirement> <requirement type="package" version="1.32">tar</requirement> </requirements> @@ -130,7 +130,7 @@ </param> <when value="detect"> - <param name="fastqs" type="data" format="fastq" multiple="true" label="Fastq Read Files" /> + <param name="fastqs" type="data" format="fastq,fastq.gz" multiple="true" label="Fastq Read Files" /> <param argument="--polymorphism-prediction" name="polymorphism_prediction" type="select" label="Detection Mode" help="**Polymorphism mode**: Detect variants with frequencies between 0% and 100% if a mixture model is well-supported by the read alignment evidence. Use to analyze a mixed population of genomes evolved from a common ancestor. **Consensus mode**: Detect variants present in 100% of the sample. Use when re-sequencing a clonal haploid genome. This mode is the default."> <option value="" selected="true">Consensus</option> @@ -216,7 +216,7 @@ </repeat> <conditional name="run"> <param name="mode" value="detect" /> - <param name="fastqs" value="lambda.short_sequence_repeats.fastq" /> + <param name="fastqs" value="lambda.short_sequence_repeats.fastq.gz" ftype="fastq.gz" /> <param name="polymorphism_prediction" value="" /> <param name="name" value="smallest" /> <param name="predict_junctions" value="" /> @@ -247,7 +247,7 @@ </repeat> <conditional name="run"> <param name="mode" value="detect" /> - <param name="fastqs" value="lambda.short_sequence_repeats.fastq" /> + <param name="fastqs" value="lambda.short_sequence_repeats.fastq.gz" ftype="fastq.gz"/> <param name="polymorphism_prediction" value="" /> <param name="name" value="smallest" /> <param name="predict_junctions" value="" />