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view test-data/gdout.txt @ 3:0d18a3ba2d1c draft default tip
"planemo upload commit 6e869b3e13ed7b012b270f14fce812613642e5f2"
| author | iuc |
|---|---|
| date | Mon, 04 Apr 2022 08:30:52 +0000 |
| parents | 82fb5e3bb93e |
| children |
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#=GENOME_DIFF 1.0 #=TITLE smallest #=CREATED 09:02:10 11 Oct 2021 #=PROGRAM breseq 0.35.5 #=COMMAND breseq --num-processors 1 -o results --reference /home/berntm/.planemo/planemo_tmp_761ytc5o/test-data/lambda.gbk /tmp/tmpxwfwo8j7/files/c/c/a/dataset_cca0e808-86ed-4449-ad0e-b35d828c94e7.dat --name smallest #=REFSEQ /home/berntm/.planemo/planemo_tmp_761ytc5o/test-data/lambda.gbk #=READSEQ /tmp/tmpxwfwo8j7/files/c/c/a/dataset_cca0e808-86ed-4449-ad0e-b35d828c94e7.dat #=CONVERTED-BASES 62500 #=CONVERTED-READS 1250 #=INPUT-BASES 62500 #=INPUT-READS 1250 #=MAPPED-BASES 61052 #=MAPPED-READS 1225 INS 1 9 NC_001416 41405 GCGGCGGCG repeat_length=3 repeat_new_copies=5 repeat_ref_copies=2 repeat_seq=GCG DEL 2 6,10 NC_001416 41601 3 repeat_length=3 repeat_new_copies=1 repeat_ref_copies=2 repeat_seq=AAC SNP 3 4 NC_001416 47317 T RA 4 . NC_001416 47317 0 N T consensus_score=31.3 frequency=1 major_base=T major_cov=7/5 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=7/5 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=7/5 MC 5 . NC_001416 1 38811 0 0 left_inside_cov=0 left_outside_cov=NA right_inside_cov=1 right_outside_cov=2 MC 6 . NC_001416 41601 41603 0 0 left_inside_cov=0 left_outside_cov=8 right_inside_cov=0 right_outside_cov=7 MC 7 . NC_001416 48305 48312 0 0 left_inside_cov=1 left_outside_cov=2 right_inside_cov=1 right_outside_cov=2 MC 8 . NC_001416 48485 48502 0 0 left_inside_cov=1 left_outside_cov=2 right_inside_cov=0 right_outside_cov=NA JC 9 . NC_001416 41398 1 NC_001416 41405 -1 -1 alignment_overlap=-1 coverage_minus=2 coverage_plus=4 flanking_left=50 flanking_right=50 frequency=1 junction_possible_overlap_registers=48 key=NC_001416__41398__1__NC_001416__41405__-1__-1__C__50__50__0__0 max_left=38 max_left_minus=38 max_left_plus=38 max_min_left=23 max_min_left_minus=23 max_min_left_plus=17 max_min_right=11 max_min_right_minus=11 max_min_right_plus=11 max_pos_hash_score=96 max_right=47 max_right_minus=26 max_right_plus=47 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.14 new_junction_read_count=7 polymorphism_frequency=9.346e-01 pos_hash_score=6 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=49 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.16 side_2_overlap=0 side_2_possible_overlap_registers=49 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=C JC 10 . NC_001416 41600 -1 NC_001416 41604 1 0 alignment_overlap=4 coverage_minus=5 coverage_plus=1 flanking_left=50 flanking_right=50 frequency=1 junction_possible_overlap_registers=45 key=NC_001416__41600__-1__NC_001416__41600__1__4____50__50__0__0 max_left=20 max_left_minus=20 max_left_plus=10 max_min_left=20 max_min_left_minus=20 max_min_left_plus=10 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=90 max_right=44 max_right_minus=44 max_right_plus=36 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.05 new_junction_read_count=6 polymorphism_frequency=1.000e+00 pos_hash_score=5 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=49 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=45 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=6 UN 11 . 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