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"planemo upload commit debdcdbb89f9bf3e2c3eed05cb078eddb27d4684"
author iuc
date Mon, 02 Dec 2019 04:51:27 -0500
parents f848a7f97332
children 0d18a3ba2d1c
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<!DOCTYPE html
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<html>
<head>
<title>Mutation Comparison</title>
<style type = "text/css">
body {font-family: sans-serif; font-size: 11pt;}
th {background-color: rgb(0,0,0); color: rgb(255,255,255);}
table {background-color: rgb(1,0,0); color: rgb(0,0,0);}
tr {background-color: rgb(255,255,255);}
.mutation_in_codon {color:red; text-decoration : underline;}
.snp_type_synonymous{color:green;}
.snp_type_nonsynonymous{color:blue;}
.snp_type_nonsense{color:red;}
.mutation_header_row {background-color: rgb(0,130,0);}
.read_alignment_header_row {background-color: rgb(255,0,0);}
.missing_coverage_header_row {background-color: rgb(0,100,100);}
.new_junction_header_row {background-color: rgb(0,0,155);}
.copy_number_header_row {background-color: rgb(153,102,0);}
.alternate_table_row_0 {background-color: rgb(255,255,255);}
.alternate_table_row_1 {background-color: rgb(235,235,235);}
.gray_table_row {background-color: rgb(230,230,245);}
.polymorphism_table_row {background-color: rgb(160,255,160);}
.highlight_table_row {background-color: rgb(192,255,255);}
.reject_table_row {background-color: rgb(255,200,165);}
.user_defined_table_row {background-color: rgb(255,255,0);}
.information_table_row {background-color: rgb(200,255,255);}
.junction_repeat {background-color: rgb(255,165,0)}
.junction_gene {}
.hidden { display: none; }
.unhidden { display: block; }

</style>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<script type="text/javascript">
  function hideTog(divID) {
    var item = document.getElementById(divID);
    if (item) {
      item.className=(item.className=='hidden')?'unhidden':'hidden';
    }
  }
  function showTog(butID) {
    var button = document.getElementById(butID);
    if (button) {
      button.value=(button.value=='Show')?'Hide':'Show';
    }
  }
</script>

</head>
<body>
<!--Output Html_Mutation_Table_String-->
<table border="0" cellspacing="1" cellpadding="3">
<tr><th colspan="5" align="left" class="mutation_header_row">Predicted mutations</th></tr><tr>
<th>position</th>
<th>mutation</th>
<th>annotation</th>
<th>gene</th>
<th width="100%">description</th>
</tr>

<!-- Item Lines -->

<!-- Print The Table Row -->
<tr class="normal_table_row">
<td align="right">41,405</td><!-- Position -->
<td align="center">(GCG)<sub>2&rarr;5</sub></td><!-- Cell Mutation -->
<td align="center">coding&nbsp;(325/873&nbsp;nt)</td>
<td align="center"><i>NinC</i>&nbsp;&rarr;</td>
<td align="left">NinC protein</td>
</tr>
<!-- End Table Row -->

<!-- Print The Table Row -->
<tr class="normal_table_row">
<td align="right">41,601</td><!-- Position -->
<td align="center">(AAC)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
<td align="center">coding&nbsp;(521&#8209;523/873&nbsp;nt)</td>
<td align="center"><i>NinC</i>&nbsp;&rarr;</td>
<td align="left">NinC protein</td>
</tr>
<!-- End Table Row -->

<!-- Print The Table Row -->
<tr class="normal_table_row">
<td align="right">41,716</td><!-- Position -->
<td align="center">(T)<sub>5&rarr;9</sub></td><!-- Cell Mutation -->
<td align="center">coding&nbsp;(636/873&nbsp;nt)</td>
<td align="center"><i>NinC</i>&nbsp;&rarr;</td>
<td align="left">NinC protein</td>
</tr>
<!-- End Table Row -->

<!-- Print The Table Row -->
<tr class="normal_table_row">
<td align="right">44,075</td><!-- Position -->
<td align="center">(CAAA)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
<td align="center">coding&nbsp;(190&#8209;193/624&nbsp;nt)</td>
<td align="center"><i>Q</i>&nbsp;&rarr;</td>
<td align="left">late gene regulator</td>
</tr>
<!-- End Table Row -->

<!-- Print The Table Row -->
<tr class="normal_table_row">
<td align="right">47,317</td><!-- Position -->
<td align="center">N&rarr;T</td><!-- Cell Mutation -->
<td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font>&nbsp;(<font class="mutation_in_codon">N</font>TC&rarr;<font class="mutation_in_codon">A</font>TC)&nbsp;</span></td>
<td align="center"><i>lambdap78</i>&nbsp;&larr;</td>
<td align="left">putative envelope protein</td>
</tr>
<!-- End Table Row -->
</table></body></html>