Mercurial > repos > iuc > brew3r_r

annotate test-data/output.gtf @ 3:d3b0390f325f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit d287d5688e57f4154d5875789e0cd4d5c87f11ce
author iuc
date Thu, 03 Oct 2024 22:35:49 +0000
parents 928a52b5c938
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
1 ##gff-version 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
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diff changeset
2 ##source-version rtracklayer 1.64.0
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
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3 ##date 2024-06-06
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
4 chr1 rtracklayer exon 5 19 . + . gene_id "gene11"; gene_name "gene11"; transcript_id "transcript11"; exon_id "exon11.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
5 chr1 rtracklayer exon 20 30 . + . gene_id "gene12"; gene_name "gene12"; transcript_id "transcript12"; exon_id "exon12"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
6 chr1 rtracklayer exon 105 119 . + . gene_id "gene21"; gene_name "gene21"; transcript_id "transcript21"; exon_id "exon21.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
7 chr1 rtracklayer exon 120 125 . + . gene_id "gene22"; gene_name "gene22"; transcript_id "transcript22"; exon_id "exon22"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
8 chr1 rtracklayer exon 205 219 . + . gene_id "gene31"; gene_name "gene31"; transcript_id "transcript31"; exon_id "exon31.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
9 chr1 rtracklayer exon 220 225 . + . gene_id "gene32"; gene_name "gene32"; transcript_id "transcript32"; exon_id "exon32.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
10 chr1 rtracklayer exon 305 310 . + . gene_id "gene41"; gene_name "gene41"; transcript_id "transcript41"; exon_id "exon41"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
11 chr1 rtracklayer exon 305 325 . + . gene_id "gene42"; gene_name "gene42"; transcript_id "transcript42"; exon_id "exon42.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
12 chr1 rtracklayer exon 405 410 . + . gene_id "gene51"; gene_name "gene51"; transcript_id "transcript51"; exon_id "exon51"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
13 chr1 rtracklayer exon 405 425 . + . gene_id "gene52"; gene_name "gene52"; transcript_id "transcript52"; exon_id "exon52"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
14 chr1 rtracklayer exon 505 519 . + . gene_id "gene61"; gene_name "gene61"; transcript_id "transcript61"; exon_id "exon61.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
15 chr1 rtracklayer exon 520 525 . + . gene_id "gene62"; gene_name "gene62"; transcript_id "transcript62"; exon_id "exon62.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
16 chr1 rtracklayer exon 533 540 . + . gene_id "gene62"; gene_name "gene62"; transcript_id "transcript62"; exon_id "BREW3R0000000003"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
17 chr1 rtracklayer exon 545 560 . + . gene_id "gene62"; gene_name "gene62"; transcript_id "transcript62"; exon_id "BREW3R0000000004"; exon_number 3
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
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18 chr1 rtracklayer exon 572 575 . + . gene_id "gene62"; gene_name "gene62"; transcript_id "transcript62"; exon_id "BREW3R0000000005"; exon_number 4
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
19 chr1 rtracklayer exon 601 610 . + . gene_id "gene71"; gene_name "gene71"; transcript_id "transcript72"; exon_id "exon71"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
20 chr1 rtracklayer exon 601 625 . + . gene_id "gene71"; gene_name "gene71"; transcript_id "transcript71"; exon_id "exon71.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
21 chr1 rtracklayer exon 630 640 . + . gene_id "gene71"; gene_name "gene71"; transcript_id "transcript72"; exon_id "exon72"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
22 chr1 rtracklayer exon 701 710 . + . gene_id "gene82"; gene_name "gene82"; transcript_id "transcript82"; exon_id "exon82"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
23 chr1 rtracklayer exon 701 725 . + . gene_id "gene81"; gene_name "gene81"; transcript_id "transcript81"; exon_id "exon81.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
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24 chr1 rtracklayer exon 730 740 . + . gene_id "gene82"; gene_name "gene82"; transcript_id "transcript82"; exon_id "exon83"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
25 chr1 rtracklayer exon 801 810 . + . gene_id "gene1"; gene_name "gene1"; transcript_id "transcript92"; exon_id "exon92"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
26 chr1 rtracklayer exon 801 825 . + . gene_id "gene1"; gene_name "gene1"; transcript_id "transcript91"; exon_id "exon91.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
27 chr1 rtracklayer exon 830 840 . + . gene_id "gene1"; gene_name "gene1"; transcript_id "transcript92"; exon_id "exon93"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
28 chr1 rtracklayer exon 901 908 . + . gene_id "gene101"; gene_name "gene101"; transcript_id "transcript101"; exon_id "exon101"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
29 chr1 rtracklayer exon 901 910 . + . gene_id "gene102"; gene_name "gene102"; transcript_id "transcript102"; exon_id "exon102"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
30 chr1 rtracklayer exon 930 940 . + . gene_id "gene102"; gene_name "gene102"; transcript_id "transcript102"; exon_id "exon103"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
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31 chr1 rtracklayer exon 1005 1025 . + . gene_id "gene111"; gene_name "Gm001"; transcript_id "transcript111"; exon_id "exon111.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
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32 chr1 rtracklayer exon 1033 1040 . + . gene_id "gene111"; gene_name "Gm001"; transcript_id "transcript111"; exon_id "BREW3R0000000001"; exon_number 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
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33 chr1 rtracklayer exon 1045 1054 . + . gene_id "gene111"; gene_name "Gm001"; transcript_id "transcript111"; exon_id "BREW3R0000000002"; exon_number 3
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
34 chr1 rtracklayer exon 1055 1070 . + . gene_id "gene112"; gene_name "gene112"; transcript_id "transcript112"; exon_id "exon112"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
35 chr1 rtracklayer exon 1100 1113 . + . gene_id "gene121"; gene_name "gene121"; transcript_id "transcript121"; exon_id "exon121.ext"; exon_number 1
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
36 chr1 rtracklayer exon 1103 1120 . - . gene_id "gene122"; gene_name "gene122"; transcript_id "transcript122"; exon_id "exon122.ext"; exon_number 1