Mercurial > repos > iuc > busco

annotate test-data/genome_results/short_summary @ 12:1278204240d8 draft

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"planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
author iuc
date Tue, 02 Nov 2021 09:40:29 +0000
parents 2dd755c1c6ff
children bb935709506a
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2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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1 # BUSCO version is: 5.2.1
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013)
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/e/c/dataset_9ec37448-e146-4536-b66f-9082e1734ea4.dat
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5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
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4 # BUSCO was run in mode: genome
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cf13a1e03e5b "planemo upload commit e9c6496b181bbd2665e953a1f9ede35921707e2a"
iuc
parents: 8
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5 # Gene predictor used: augustus
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5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
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4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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7 ***** Results: *****
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5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
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4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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10 1 Complete BUSCOs (C)
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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11 1 Complete and single-copy BUSCOs (S)
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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12 0 Complete and duplicated BUSCOs (D)
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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13 0 Fragmented BUSCOs (F)
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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14 1012 Missing BUSCOs (M)
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents: 2
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15 1013 Total BUSCO groups searched
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2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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17 Dependencies and versions:
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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18 hmmsearch: 3.1
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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19 makeblastdb: 2.12.0+
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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20 tblastn: 2.12.0+
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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21 augustus: 3.4.0
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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22 gff2gbSmallDNA.pl: None
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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23 new_species.pl: None
2dd755c1c6ff "planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
iuc
parents: 9
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24 etraining: None