Mercurial > repos > iuc > busco

annotate test-data/genome_results/short_summary @ 6:1e62c28ba91d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 768639889e24aecd31d85d37d6f0bba00ac2a486"
author iuc
date Wed, 04 Dec 2019 13:45:35 -0500
parents 382a4c19007f
children 4048d82f0c88
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
382a4c19007f planemo upload commit 2896dcfd180800d00ea413a59264ef8b11788b8e
iuc
parents: 0
diff changeset
1 # BUSCO version is: 3.0.2
382a4c19007f planemo upload commit 2896dcfd180800d00ea413a59264ef8b11788b8e
iuc
parents: 0
diff changeset
2 # The lineage dataset is: N/A (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A)
0
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
3 # To reproduce this run: python /tmp/tmpeQaU9k/job_working_directory/000/2/conda-env/bin/BUSCO.py -i /tmp/tmpeQaU9k/files/000/dataset_1.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m genome -c 1 -sp generic -e 0.01 -z
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
4 #
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
5 # Summarized benchmarking in BUSCO notation for file /tmp/tmpeQaU9k/files/000/dataset_1.dat
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
6 # BUSCO was run in mode: genome
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
7
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
8 C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
9
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
10 0 Complete BUSCOs (C)
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
11 0 Complete and single-copy BUSCOs (S)
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
12 0 Complete and duplicated BUSCOs (D)
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
13 0 Fragmented BUSCOs (F)
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
14 1 Missing BUSCOs (M)
5e3543b1ef9f planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08
iuc
parents:
diff changeset
15 1 Total BUSCO groups searched