Mercurial > repos > iuc > busco

annotate test-data/genome_results_metaeuk_auto/short_summary @ 15:41030a6c03b7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 154d9b1916116b2880f34836d24a76129509086f"
author iuc
date Mon, 11 Apr 2022 09:02:11 +0000
parents e4bd1e99bacf
children bb935709506a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
14
e4bd1e99bacf "planemo upload commit f72125ad8b8d8ba7a63da931bf407ffb658b88dc"
iuc
parents: 12
diff changeset
1 # BUSCO version is: 5.3.1
12
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
2 # The lineage dataset is: eukaryota_odb10 (Creation date: 2020-09-10, number of genomes: 70, number of BUSCOs: 255)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp5e3tdhzs/files/c/9/b/dataset_c9b61090-5a2d-4dd0-8fd1-d147a4e1573c.dat
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
4 # BUSCO was run in mode: genome
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
5 # Gene predictor used: metaeuk
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
6
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
7 ***** Results: *****
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
8
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
9 C:0.4%[S:0.4%,D:0.0%],F:0.0%,M:99.6%,n:255
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
10 1 Complete BUSCOs (C)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
11 1 Complete and single-copy BUSCOs (S)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
12 0 Complete and duplicated BUSCOs (D)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
13 0 Fragmented BUSCOs (F)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
14 254 Missing BUSCOs (M)
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
15 255 Total BUSCO groups searched
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
16
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
17 Dependencies and versions:
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
18 hmmsearch: 3.1
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
19 prodigal: 2.6.3
1278204240d8 "planemo upload commit d00431b92294849bd41d369d8a699e4669e5fc19"
iuc
parents:
diff changeset
20 metaeuk: 5.34c21f2