Mercurial > repos > iuc > busco
comparison test-data/genome_results/short_summary @ 10:2dd755c1c6ff draft
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1"
| author | iuc |
|---|---|
| date | Thu, 15 Jul 2021 13:09:00 +0000 |
| parents | cf13a1e03e5b |
| children | bb935709506a |
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| 9:cf13a1e03e5b | 10:2dd755c1c6ff |
|---|---|
| 1 # BUSCO version is: 5.0.0 | 1 # BUSCO version is: 5.2.1 |
| 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) | 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) |
| 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/3/3/6/dataset_336adf79-955a-4ca8-aeda-96fc1fce9a4c.dat | 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/e/c/dataset_9ec37448-e146-4536-b66f-9082e1734ea4.dat |
| 4 # BUSCO was run in mode: genome | 4 # BUSCO was run in mode: genome |
| 5 # Gene predictor used: augustus | 5 # Gene predictor used: augustus |
| 6 | 6 |
| 7 ***** Results: ***** | 7 ***** Results: ***** |
| 8 | 8 |
| 11 1 Complete and single-copy BUSCOs (S) | 11 1 Complete and single-copy BUSCOs (S) |
| 12 0 Complete and duplicated BUSCOs (D) | 12 0 Complete and duplicated BUSCOs (D) |
| 13 0 Fragmented BUSCOs (F) | 13 0 Fragmented BUSCOs (F) |
| 14 1012 Missing BUSCOs (M) | 14 1012 Missing BUSCOs (M) |
| 15 1013 Total BUSCO groups searched | 15 1013 Total BUSCO groups searched |
| 16 | |
| 17 Dependencies and versions: | |
| 18 hmmsearch: 3.1 | |
| 19 makeblastdb: 2.12.0+ | |
| 20 tblastn: 2.12.0+ | |
| 21 augustus: 3.4.0 | |
| 22 gff2gbSmallDNA.pl: None | |
| 23 new_species.pl: None | |
| 24 etraining: None |