Mercurial > repos > iuc > busco
comparison test-data/genome_results/short_summary_cached @ 18:94170eee0ad8 draft
planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
| author | iuc |
|---|---|
| date | Fri, 14 Apr 2023 08:13:46 +0000 |
| parents | |
| children | 2a5b8b9936bf |
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| 17:e824f5d958d0 | 18:94170eee0ad8 |
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| 1 # BUSCO version is: 5.4.6 | |
| 2 # The lineage dataset is: archaea_odb10 (Creation date: 2021-02-23, number of genomes: 404, number of BUSCOs: 194) | |
| 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpte_du6dt/files/000/dataset_1.dat | |
| 4 # BUSCO was run in mode: prok_genome | |
| 5 # Gene predictor used: prodigal | |
| 6 | |
| 7 ***** Results: ***** | |
| 8 | |
| 9 C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:194 | |
| 10 0 Complete BUSCOs (C) | |
| 11 0 Complete and single-copy BUSCOs (S) | |
| 12 0 Complete and duplicated BUSCOs (D) | |
| 13 0 Fragmented BUSCOs (F) | |
| 14 194 Missing BUSCOs (M) | |
| 15 194 Total BUSCO groups searched | |
| 16 | |
| 17 Assembly Statistics: | |
| 18 1 Number of scaffolds | |
| 19 1 Number of contigs | |
| 20 62370 Total length | |
| 21 0.000% Percent gaps | |
| 22 62 KB Scaffold N50 | |
| 23 62 KB Contigs N50 | |
| 24 | |
| 25 | |
| 26 Dependencies and versions: | |
| 27 hmmsearch: 3.1 | |
| 28 bbtools: 39.01 | |
| 29 prodigal: 2.6.3 | |
| 30 busco: 5.4.6 |