# HG changeset patch # User iuc # Date 1484251967 18000 # Node ID 5e3543b1ef9f329324be6bd8ba2b3032fb978c56 planemo upload commit 0de2ff52c643ec5bd6c26110878f2d74405fdf08 diff -r 000000000000 -r 5e3543b1ef9f busco.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/busco.xml Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,86 @@ + + assess genome assembly and annotation completeness + + + busco + + + + + + + + + + + + + + + + + + + + + +
+ + + + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BUSCO: assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs + + .. _BUSCO: http://busco.ezlab.org/ + + + + doi:10.1093/bioinformatics/btv351 + + diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/ancestral --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/ancestral Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,20 @@ +>BUSCOaEOG7B0HST +MAADQAQFQQLLVSLLSTDNEVRKQAEEAYNNLPVESKVTFLLGAIANGQLSEEVRQLAA +VLLRRLFSSEFLEFYKKLPAEAQAQLKEQILLAVQQEVSEQLRRKVCEVVAEVARNLIDE +DGNNQWPEFLQFLFQCANSPSPQLKESALRIFTSVPGIFGNQEAQYLDLIKQMLAKSLED +TEDAEVRLQAVRAVGAFILLHDKEKEIQKHFADLLPALLQVVAESIEKQDDDALLKVLID +LAEATPKFLRPQLETILELCLKVLSEEDVEDSWRHLALEVLVTLAETAPAMVRKRAEKYI +VALVPLVLKMMTDLEEDEDWSVADEITEDDNDSNNVVAESALDRLACGLGGKVVLPLVVE +AIPAMLSSSDWKKRHAALMAISAIGEGCHKQMEALLDQVLDGVLKYLQDPHPRVRYAACN +AIGQMSTDFAPIFEKKFHDKVIPGLLLLLDDEANPRVQAHAGAALVNFSEDCPKNILTRY +LDAIMAKLEAILTSKFKELVEKGTKLVLEQVVTTIASVADTAEEEFVAYYDRLMPCLKYI +IQNANSEELKLLRGKTIECVSLIGLAVGREKFIADASEVMDLLLKTHTEGAELPDDDPQT +SYLISAWARICKILGKQFEQYLPLVMGPVLRTASLKPEVALLDNEDLEDIEGDVDWQFVS +LGEQQNFGIRTAGLEDKASACEMLVCYARELKEGFAEYAEEVVRLMVPLLKFYFHDGVRT +AAAESLPYLLDCAKIKGPQYLEGMWAYICPELLKAIDTEPEKEVLSELLSSLAKCIETLG +AGCLSEEALKELLRILDKLLKEHFERAEKRLEKRKDEDYDEVVEEELAEEDDEDVYILSK +VADILHALFATYKEAFLPAFDQVVPHFVKLLEPERPLADRQWALCVFDDVIEFGGPACVK +YQEIFLRALLQYVSDKSAEVRQAAAYGCGVLGQFGGEQFAEACAEALPKLVEVINDPESR +ELENINATENAISAVTKILKYNKSAITNVDELLAVWLSWLPVVEDEEEAAHVYGYLCDLI +EANHPVVLGANNANLPRIVSILAEAFLREVVEAESAVAKRLLSIVKQIESNEELLQACIS +ELSAEQQQALKEALRELAA diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/clade_parameters --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/clade_parameters Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ +#ARTHROPODA Clade parameters for BUSCOS +Z 102785 +sp1 fly +sp2 nasonia +sp3 generic +flank 5000 diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/hmms/BUSCOaEOG7B0HST.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/hmms/BUSCOaEOG7B0HST.hmm Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,3319 @@ +HMMER3/f [3.1b1 | May 2013] +NAME BUSCOaEOG7B0HST +LENG 1099 +ALPH amino +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue Apr 15 12:38:52 2014 +NSEQ 23 +EFFN 0.603638 +CKSUM 3500044453 +STATS LOCAL MSV -12.8285 0.69537 +STATS LOCAL VITERBI -13.9416 0.69537 +STATS LOCAL FORWARD -6.9634 0.69537 +HMM A C D E F G H I K L M N P Q R S T V W Y + m->m m->i m->d i->m i->i d->m d->d + COMPO 2.48078 4.06146 2.86181 2.63028 3.29447 3.05836 3.78580 2.74928 2.73520 2.31160 3.52187 3.11102 3.40692 3.07770 2.99944 2.73817 2.93658 2.56860 4.67180 3.56430 + 2.68613 4.42194 2.77509 2.73133 3.46348 2.40518 3.72504 3.29351 2.67743 2.69350 4.24642 2.90347 2.73745 3.18156 2.89802 2.37884 2.77522 2.98518 4.58487 3.61513 + 0.08969 2.57172 4.66890 1.68962 0.20406 0.00000 * + 1 2.57261 4.35167 3.86119 3.40692 3.39776 3.63900 4.23782 2.41302 3.22676 2.05613 1.62924 3.68308 4.13489 3.59563 3.47552 3.02060 2.87665 2.31461 5.12383 3.92328 24 m - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 2 1.67850 4.50203 3.03694 2.37498 3.89784 3.30262 3.77719 3.19331 2.62660 2.92462 3.55380 3.06800 3.81401 2.99279 3.01679 2.53568 2.82599 2.89438 5.25006 3.96735 25 a - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 3 1.72593 4.51596 3.03450 2.62358 3.94870 3.02850 3.77178 3.31742 2.58759 2.83773 3.85577 3.06024 3.80166 2.49425 2.96418 2.62424 2.82773 2.99569 5.27761 3.99238 26 a - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 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5.12530 3.92389 1186 i - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1080 2.56360 4.66496 2.72123 2.45464 3.89421 3.38862 3.63209 3.29480 2.46135 2.92923 2.97518 2.86011 3.79757 2.61147 2.90558 2.27293 2.80222 2.86630 5.20209 3.88794 1187 s - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1081 2.59610 4.78521 2.88446 2.32832 4.04872 3.00606 3.36627 3.37255 2.38879 3.06376 3.88438 2.91792 3.79289 2.37634 2.82423 2.55002 2.35483 3.13912 5.30016 3.97108 1188 e - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1082 2.85962 4.51935 3.60256 3.15522 3.02648 3.71355 3.04743 2.79613 2.89090 1.35018 3.43626 3.49960 4.12838 3.34610 3.14431 3.08020 3.10900 2.69433 4.64777 3.18882 1189 l - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1083 2.24214 4.35913 3.12893 2.72367 4.10182 3.10040 3.87948 3.50951 2.76188 3.16035 3.98735 2.84931 3.00492 3.08855 3.15914 1.89345 2.09252 3.08768 5.41561 4.14372 1190 s - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1084 2.31395 4.56485 2.94325 2.53491 4.06589 3.23457 3.74286 3.47490 2.57576 3.10354 3.93411 2.80725 2.34913 2.75702 2.99510 2.44567 2.47250 3.11093 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3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1087 2.45337 4.92775 2.85316 2.46904 4.28244 3.39523 3.65025 3.67922 2.09051 3.24296 4.09599 2.96191 3.86105 1.77607 2.58747 2.75945 2.99041 3.34573 5.43110 4.13129 1194 q - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1088 2.49980 4.96306 2.85058 2.31425 4.25896 3.40997 3.34894 3.68157 2.24163 3.22922 4.05230 2.92310 3.83709 1.90077 2.48720 2.71600 2.94206 3.34114 5.40412 4.08601 1195 q - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.02912 3.94655 4.66890 0.61958 0.77255 0.48576 0.95510 + 1089 1.40096 4.54493 2.86093 2.29232 4.11697 3.20644 3.89531 3.35987 2.76539 3.13095 4.04186 3.05971 3.81568 3.11788 3.14425 2.65977 2.91048 3.03040 5.45737 4.16956 1196 a - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.09398 3.94655 2.65386 0.61958 0.77255 0.48576 0.95510 + 1090 3.14188 4.59132 4.35914 3.90033 3.06444 4.18402 4.53882 2.11252 3.65218 0.97033 3.00953 4.17966 4.52442 3.97949 3.84065 3.59794 3.40915 2.21120 5.03667 3.76974 1197 l - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.03105 3.88362 4.60597 0.61958 0.77255 0.54401 0.86849 + 1091 2.76335 5.01331 2.78827 2.31257 4.28270 3.40442 2.43764 3.73350 2.10323 3.26459 4.09801 2.90635 3.84310 2.21160 2.52975 2.75143 2.98399 3.39532 5.40606 4.08654 1198 k - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.03105 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4.22346 1.92820 1201 l - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.03209 3.85097 4.57331 0.61958 0.77255 0.57161 0.83152 + 1095 2.60101 4.65512 3.08558 2.56003 3.93846 3.38076 3.35844 3.37716 2.29364 2.98880 3.84025 3.01919 3.81697 2.81258 2.11081 2.23871 2.85240 2.88090 5.19817 3.90318 1202 r - - - + 2.68618 4.42210 2.77520 2.73124 3.46354 2.40513 3.72495 3.29354 2.67741 2.69355 4.24690 2.90347 2.73740 3.18147 2.89801 2.37883 2.77520 2.98519 4.58477 3.61504 + 0.08263 2.67392 4.57331 0.47744 0.96856 0.57161 0.83152 + 1096 2.18154 4.62997 2.75539 1.99629 4.09189 3.21947 3.71130 3.44588 2.55475 3.11415 3.95949 2.91659 3.75436 2.89454 2.98369 2.45299 2.43810 3.09910 5.37976 4.06153 1204 e - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.03209 3.85097 4.57331 0.61958 0.77255 0.52453 0.89608 + 1097 2.46358 4.30538 3.37350 2.85594 3.45882 3.46342 3.46832 2.79047 2.73797 1.87351 3.43484 3.24873 3.57204 3.10968 3.06502 2.75631 2.66774 2.52856 4.91799 3.66813 1205 l - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.06381 3.88362 3.18837 0.61958 0.77255 0.54401 0.86849 + 1098 1.76981 4.22446 3.25481 2.84716 3.91324 3.07102 3.91525 3.24756 2.83205 2.73784 3.84439 3.15656 3.31202 3.16923 3.18419 1.97191 2.69401 2.87700 5.28803 4.03807 1206 a - - - + 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 + 0.17726 3.85187 1.95758 0.61958 0.77255 0.57087 0.83249 + 1099 2.12671 4.27681 2.94823 2.62386 4.02260 3.00213 3.81075 3.41128 2.69615 3.08313 3.92445 2.61229 3.24401 3.03239 3.07499 2.18871 2.34694 2.99753 5.34368 4.07427 1207 a - - - + 2.68560 4.42236 2.77531 2.73135 3.46365 2.40517 3.72506 3.29361 2.67747 2.69366 4.24701 2.90355 2.73729 3.18150 2.89812 2.37889 2.77501 2.98510 4.58488 3.61514 + 0.29451 1.36610 * 1.25311 0.33633 0.00000 * +// diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/lengths_cutoff --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/lengths_cutoff Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,1 @@ +BUSCOaEOG7B0HST 1099 16.763712248907 1099.28947368421 diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/prfl/BUSCOaEOG7B0HST.prfl --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/prfl/BUSCOaEOG7B0HST.prfl Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,1179 @@ +[name] +unknown + +[dist] +# distance from previous block +# +2 136 + +[block] +# block no. 0 follows, 38 sequences, length 19 +# corresponding to MSA columns: +# 159-177 +name=unknown_A +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00849 0.00611 0.00840 0.00857 0.00923 0.00669 0.00611 0.00985 0.00961 0.01343 0.01902 0.11988 0.02008 0.26734 0.45119 0.00764 0.01148 0.00842 0.00363 0.00479 +1 0.04698 0.19994 0.01897 0.01402 0.05388 0.40529 0.01057 0.01996 0.01473 0.02840 0.01285 0.12269 0.01254 0.00774 0.00537 0.00165 0.00826 0.00573 0.00343 0.00702 +2 0.10059 0.05592 0.04037 0.12369 0.03571 0.33917 0.01177 0.05040 0.04291 0.12639 0.01235 0.01357 0.00924 0.00633 0.00543 0.00172 0.00824 0.00453 0.00392 0.00774 +3 0.00726 0.00551 0.00670 0.00765 0.00853 0.00495 0.00526 0.00846 0.01222 0.01564 0.04202 0.55279 0.26594 0.01769 0.00750 0.00231 0.00335 0.01570 0.00558 0.00495 +4 0.01515 0.01282 0.01932 0.01411 0.01942 0.01141 0.20122 0.08029 0.06461 0.07934 0.01338 0.01496 0.01020 0.00535 0.00554 0.00143 0.00624 0.00509 0.00412 0.41602 +5 0.01058 0.00786 0.01056 0.13305 0.01554 0.00789 0.00807 0.01432 0.07133 0.05518 0.29599 0.18162 0.03460 0.01123 0.00661 0.00194 0.00427 0.02125 0.02469 0.08341 +6 0.05178 0.16631 0.50028 0.01491 0.02246 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0.01960 0.01069 0.01247 0.00891 0.00446 0.00446 0.00089 0.00446 0.00356 0.00356 0.82536 +79 0.60546 0.01289 0.01141 0.03445 0.01434 0.01476 0.00806 0.19305 0.01474 0.02930 0.00994 0.01113 0.00748 0.00600 0.00436 0.00185 0.00525 0.00386 0.00425 0.00743 +80 0.00799 0.00613 0.00731 0.00702 0.00867 0.00545 0.00526 0.01034 0.01579 0.02119 0.49153 0.04977 0.31495 0.01339 0.00710 0.00194 0.00292 0.01156 0.00624 0.00545 + +[dist] +# distance from previous block +# +1 29 + +[block] +# block no. 3 follows, 38 sequences, length 18 +# corresponding to MSA columns: +# 318-335 +name=unknown_D +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00863 0.00603 0.00739 0.00730 0.00794 0.00597 0.00486 0.00981 0.01155 0.01582 0.22738 0.04095 0.05989 0.43542 0.09909 0.00487 0.00594 0.03206 0.00458 0.00452 +1 0.01629 0.01439 0.02948 0.02151 0.02697 0.01338 0.53866 0.02066 0.01474 0.15871 0.01584 0.02091 0.01213 0.00639 0.00699 0.00205 0.00884 0.05967 0.00406 0.00832 +2 0.02699 0.01024 0.01396 0.01070 0.01536 0.00884 0.00884 0.02932 0.01722 0.75522 0.02373 0.02048 0.01489 0.00745 0.00605 0.00186 0.00512 0.00605 0.00745 0.01024 +3 0.01132 0.00677 0.00894 0.00804 0.00996 0.00616 0.00616 0.01408 0.01706 0.13526 0.63780 0.04122 0.05040 0.01156 0.00694 0.00189 0.00318 0.01015 0.00675 0.00637 +4 0.01279 0.01193 0.01897 0.47336 0.21554 0.01384 0.01605 0.01867 0.12314 0.01793 0.01295 0.01672 0.00997 0.00618 0.00602 0.00196 0.00731 0.00557 0.00327 0.00783 +5 0.02656 0.01093 0.01439 0.01103 0.01570 0.00987 0.00911 0.10271 0.01838 0.68020 0.02276 0.01984 0.01440 0.00742 0.00605 0.00186 0.00528 0.00598 0.00730 0.01024 +6 0.00940 0.00635 0.00790 0.00756 0.00926 0.00573 0.00567 0.01164 0.01535 0.07562 0.41214 0.12327 0.23567 0.01443 0.03075 0.00223 0.00355 0.01152 0.00619 0.00577 +7 0.42139 0.01345 0.01259 0.01036 0.01437 0.01518 0.00850 0.30974 0.04433 0.03112 0.01212 0.01291 0.00900 0.00643 0.00478 0.00182 0.00535 0.00441 0.05407 0.00809 +8 0.02612 0.01164 0.01483 0.01137 0.01605 0.01092 0.00939 0.17777 0.01956 0.60347 0.02177 0.01920 0.01391 0.00740 0.00604 0.00185 0.00544 0.00592 0.00714 0.01024 +9 0.00875 0.00583 0.00656 0.00656 0.00656 0.00583 0.00365 0.00875 0.00875 0.01166 0.01895 0.03937 0.02187 0.78858 0.03062 0.00583 0.00583 0.00875 0.00365 0.00365 +10 0.00727 0.00584 0.00650 0.00688 0.00836 0.00506 0.00495 0.00875 0.01330 0.01655 0.10151 0.27251 0.48924 0.01610 0.00728 0.00214 0.00316 0.01387 0.00566 0.00506 +11 0.00931 0.00734 0.00972 0.12520 0.01484 0.00764 0.00804 0.04030 0.06137 0.01756 0.05485 0.39936 0.12416 0.01483 0.00722 0.00228 0.00451 0.08044 0.00522 0.00579 +12 0.01157 0.00779 0.00977 0.00950 0.01102 0.00799 0.00700 0.12038 0.01432 0.07423 0.05376 0.39973 0.05174 0.06094 0.11213 0.00344 0.02118 0.01198 0.00534 0.00617 +13 0.01361 0.13159 0.02042 0.01496 0.01574 0.01924 0.01273 0.01502 0.00967 0.01443 0.00797 0.01263 0.00787 0.00971 0.01733 0.00243 0.66035 0.00495 0.00262 0.00675 +14 0.01438 0.49867 0.16403 0.01096 0.01633 0.01852 0.01162 0.01722 0.01273 0.04415 0.01741 0.01798 0.12061 0.00688 0.00479 0.00154 0.00633 0.00500 0.00321 0.00764 +15 0.01390 0.09417 0.02208 0.09796 0.47899 0.01410 0.01590 0.01753 0.03028 0.01856 0.01438 0.02268 0.01322 0.00717 0.00610 0.00191 0.00685 0.11237 0.00337 0.00847 +16 0.01310 0.22642 0.57114 0.01539 0.02332 0.01649 0.01916 0.01878 0.01258 0.01779 0.01017 0.01192 0.00765 0.00557 0.00524 0.00175 0.00826 0.00413 0.00255 0.00859 +17 0.01457 0.10170 0.14613 0.01524 0.10099 0.06634 0.01250 0.02250 0.24510 0.04753 0.09324 0.02143 0.01780 0.00757 0.00587 0.00184 0.00620 0.03394 0.00453 0.03500 + +[dist] +# distance from previous block +# +0 2 + +[block] +# block no. 4 follows, 38 sequences, length 22 +# corresponding to MSA columns: +# 338-359 +name=unknown_E +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01964 0.05268 0.10422 0.01490 0.01969 0.19275 0.12235 0.06505 0.05216 0.21573 0.05473 0.01706 0.01319 0.00671 0.00596 0.00178 0.00769 0.00560 0.00468 0.02343 +1 0.00815 0.00702 0.00842 0.00985 0.09371 0.00619 0.00631 0.01002 0.01397 0.01739 0.12179 0.07247 0.57546 0.01391 0.00699 0.00200 0.00351 0.01180 0.00539 0.00564 +2 0.01232 0.01276 0.02439 0.01882 0.02211 0.01359 0.37215 0.01566 0.01202 0.01688 0.01383 0.08638 0.01270 0.01485 0.14833 0.00360 0.18194 0.00747 0.00321 0.00698 +3 0.01409 0.01347 0.02160 0.13263 0.54426 0.04005 0.01697 0.01755 0.01361 0.01871 0.01352 0.02099 0.01215 0.00677 0.00622 0.00192 0.00721 0.08645 0.00324 0.00859 +4 0.01254 0.01223 0.01794 0.10264 0.01868 0.01632 0.04428 0.01432 0.00996 0.01479 0.01031 0.01803 0.01019 0.05989 0.01773 0.00275 0.56746 0.04066 0.00286 0.00642 +5 0.00866 0.00579 0.00659 0.00668 0.00670 0.00577 0.00377 0.00872 0.00893 0.01190 0.01986 0.08709 0.02302 0.73930 0.02915 0.00562 0.00568 0.00928 0.00377 0.00372 +6 0.09037 0.01320 0.01568 0.01221 0.01669 0.01360 0.04314 0.31156 0.05925 0.28222 0.02055 0.01943 0.05919 0.00762 0.00596 0.00187 0.00577 0.00607 0.00616 0.00945 +7 0.01467 0.50249 0.26865 0.01333 0.01975 0.02014 0.05246 0.01842 0.01248 0.01602 0.00936 0.01100 0.00776 0.00533 0.00464 0.00153 0.00743 0.00382 0.00259 0.00812 +8 0.00949 0.00684 0.00869 0.00945 0.01048 0.00679 0.00693 0.09126 0.01381 0.01836 0.03081 0.57806 0.03557 0.01715 0.00759 0.00242 0.00419 0.13087 0.00563 0.00560 +9 0.00776 0.00577 0.00728 0.00823 0.00900 0.00545 0.00566 0.00976 0.04631 0.01667 0.09695 0.60226 0.12179 0.01737 0.00749 0.00233 0.00344 0.01558 0.00570 0.00519 +10 0.01445 0.01052 0.01278 0.00948 0.01422 0.00858 0.00763 0.01701 0.01324 0.12841 0.05154 0.01542 0.01228 0.00564 0.00566 0.00118 0.04627 0.00441 0.00425 0.61704 +11 0.05447 0.01025 0.01433 0.17492 0.02034 0.00994 0.04135 0.04806 0.01450 0.23487 0.05387 0.10616 0.01635 0.00791 0.00591 0.00178 0.00557 0.00681 0.00498 0.16762 +12 0.00880 0.00649 0.00840 0.00929 0.01065 0.00621 0.00764 0.01101 0.01356 0.01746 0.08521 0.12383 0.19191 0.05713 0.00909 0.00268 0.00466 0.41516 0.00553 0.00529 +13 0.00776 0.00596 0.00712 0.00736 0.00877 0.00533 0.00543 0.00967 0.01430 0.01871 0.27727 0.21941 0.32384 0.01517 0.00730 0.00212 0.00321 0.05009 0.00592 0.00525 +14 0.01329 0.01416 0.02688 0.02164 0.08470 0.04118 0.44035 0.01733 0.01428 0.01940 0.12319 0.03982 0.01798 0.00740 0.00784 0.00205 0.05880 0.03845 0.00372 0.00754 +15 0.04175 0.00625 0.00726 0.00715 0.00876 0.00569 0.00531 0.01030 0.01493 0.02043 0.39082 0.13321 0.29887 0.01382 0.00703 0.00200 0.00306 0.01193 0.00601 0.00541 +16 0.01062 0.00879 0.00965 0.00925 0.01147 0.00924 0.00696 0.01869 0.31524 0.02101 0.14634 0.16097 0.22300 0.01245 0.00679 0.00208 0.00380 0.01070 0.00597 0.00698 +17 0.19755 0.01109 0.03439 0.01030 0.01454 0.01021 0.00874 0.05956 0.01594 0.46313 0.05840 0.02146 0.01591 0.00773 0.00571 0.00191 0.00511 0.04313 0.00628 0.00890 +18 0.01337 0.14533 0.41635 0.01866 0.02609 0.01590 0.24331 0.01896 0.01310 0.01835 0.01085 0.01334 0.00811 0.00542 0.00586 0.00185 0.00890 0.00509 0.00270 0.00846 +19 0.02017 0.01593 0.01910 0.01482 0.01948 0.01746 0.09361 0.49862 0.17992 0.03302 0.01634 0.01637 0.01185 0.00718 0.00616 0.00188 0.00662 0.00591 0.00570 0.00983 +20 0.00836 0.00705 0.00870 0.01002 0.09383 0.00629 0.00645 0.01046 0.01456 0.01865 0.23066 0.04964 0.48689 0.01335 0.00697 0.00197 0.00347 0.01139 0.00555 0.00574 +21 0.01240 0.02882 0.64586 0.01841 0.02687 0.01416 0.13147 0.01909 0.01293 0.01909 0.01101 0.01325 0.00785 0.00562 0.00593 0.00192 0.00908 0.00486 0.00262 0.00877 + +[dist] +# distance from previous block +# +2 3 + +[block] +# block no. 5 follows, 38 sequences, length 96 +# corresponding to MSA columns: +# 363-458 +name=unknown_F +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01585 0.74463 0.04762 0.01040 0.01564 0.02297 0.01045 0.01793 0.01224 0.01448 0.00851 0.00983 0.00776 0.00513 0.00393 0.00129 0.00641 0.00326 0.00261 0.03906 +1 0.06315 0.56856 0.03111 0.01361 0.01889 0.02123 0.17512 0.01828 0.01256 0.01608 0.00924 0.01117 0.00797 0.00515 0.00460 0.00149 0.00718 0.00411 0.00275 0.00774 +2 0.02087 0.01387 0.01434 0.01191 0.01577 0.09851 0.00948 0.17664 0.17896 0.27883 0.02253 0.06479 0.04910 0.00844 0.00613 0.00190 0.00583 0.00678 0.00616 0.00915 +3 0.00855 0.00563 0.00751 0.00838 0.00912 0.00521 0.00577 0.00992 0.01262 0.05609 0.13558 0.63736 0.04090 0.01730 0.00751 0.00233 0.00348 0.01562 0.00583 0.00529 +4 0.00751 0.00549 0.00702 0.00807 0.00873 0.00507 0.00555 0.00876 0.01213 0.01597 0.07934 0.59138 0.13284 0.04477 0.00839 0.00249 0.00355 0.04242 0.00558 0.00494 +5 0.01449 0.01557 0.08551 0.03319 0.61986 0.01394 0.04534 0.01835 0.01356 0.01959 0.01127 0.01462 0.00932 0.00533 0.00589 0.00175 0.00725 0.00525 0.00298 0.05697 +6 0.09742 0.00686 0.00774 0.00765 0.00919 0.00689 0.00566 0.04503 0.01435 0.02237 0.27833 0.22845 0.03518 0.01183 0.00617 0.00192 0.00337 0.01022 0.19562 0.00575 +7 0.00760 0.00541 0.00716 0.00837 0.00881 0.00509 0.00569 0.00877 0.01176 0.01573 0.06886 0.66317 0.03930 0.06480 0.00907 0.00264 0.00371 0.05367 0.00552 0.00489 +8 0.00792 0.00667 0.00694 0.00677 0.00885 0.00597 0.00511 0.01089 0.07490 0.01788 0.13451 0.05348 0.61031 0.01432 0.00703 0.00202 0.00317 0.01200 0.00575 0.00552 +9 0.01471 0.53136 0.28030 0.01264 0.01907 0.02043 0.01438 0.01837 0.01239 0.01583 0.00920 0.01070 0.00769 0.00534 0.00450 0.00150 0.00728 0.00364 0.00256 0.00812 +10 0.00786 0.00568 0.00755 0.00885 0.00955 0.00537 0.00646 0.00933 0.01219 0.01602 0.03461 0.57426 0.08331 0.01811 0.00779 0.00249 0.00393 0.17602 0.00557 0.00505 +11 0.02421 0.01061 0.01364 0.01084 0.01515 0.00991 0.00883 0.02935 0.15536 0.59306 0.02375 0.02091 0.01557 0.00757 0.00601 0.00188 0.00498 0.00618 0.03222 0.00996 +12 0.05386 0.03012 0.71922 0.01667 0.02530 0.01395 0.02142 0.01898 0.01258 0.01946 0.01067 0.01255 0.00756 0.00571 0.00561 0.00190 0.00867 0.00438 0.00260 0.00877 +13 0.05172 0.01856 0.01745 0.01422 0.01829 0.23508 0.07061 0.27652 0.08260 0.08594 0.01685 0.01708 0.05339 0.00725 0.00592 0.00179 0.00759 0.00562 0.00493 0.00859 +14 0.01456 0.00959 0.01049 0.00944 0.01215 0.01033 0.00734 0.02390 0.35132 0.10890 0.08380 0.02411 0.02021 0.00804 0.00555 0.00179 0.00398 0.00666 0.27986 0.00797 +15 0.01247 0.01069 0.01247 0.00891 0.01426 0.00802 0.00713 0.01515 0.01247 0.01960 0.01069 0.01247 0.00891 0.00446 0.00446 0.00089 0.00446 0.00356 0.00356 0.82536 +16 0.01452 0.01388 0.02352 0.11482 0.66034 0.01421 0.01809 0.01841 0.02858 0.01931 0.01152 0.01517 0.00955 0.00549 0.00597 0.00182 0.00719 0.00539 0.00301 0.00923 +17 0.00860 0.00590 0.00675 0.00675 0.00701 0.00590 0.00401 0.00889 0.00923 0.01222 0.02226 0.03974 0.08220 0.66817 0.08363 0.00580 0.00637 0.00891 0.00378 0.00389 +18 0.00747 0.00529 0.00694 0.00820 0.00851 0.00498 0.00539 0.00841 0.01124 0.01499 0.03176 0.71118 0.03802 0.09473 0.00994 0.00278 0.00372 0.01628 0.00539 0.00476 +19 0.01136 0.01069 0.01804 0.77412 0.04143 0.01337 0.01671 0.01537 0.01203 0.01537 0.01069 0.01604 0.00802 0.00601 0.00601 0.00200 0.00802 0.00535 0.00267 0.00668 +20 0.10147 0.01044 0.01214 0.01057 0.03885 0.00995 0.00787 0.09693 0.01364 0.03482 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0.06093 0.72795 0.01426 0.01841 0.01836 0.01364 0.01951 0.01130 0.01493 0.00948 0.00538 0.00596 0.00179 0.00718 0.00536 0.00297 0.00944 +64 0.03893 0.01198 0.03604 0.18538 0.01885 0.12066 0.00980 0.04769 0.01489 0.03575 0.25106 0.09087 0.02771 0.07472 0.00839 0.00224 0.00599 0.00811 0.00462 0.00630 +65 0.36566 0.01061 0.01148 0.00936 0.01344 0.01064 0.00769 0.02344 0.01426 0.40861 0.05588 0.01726 0.01359 0.00692 0.00512 0.00186 0.00480 0.00513 0.00583 0.00842 +66 0.33858 0.08151 0.13375 0.01057 0.01529 0.04760 0.01007 0.04203 0.01338 0.12753 0.07322 0.01505 0.01250 0.00642 0.00486 0.00175 0.00574 0.00460 0.00424 0.05129 +67 0.01479 0.01580 0.06640 0.09430 0.52447 0.05432 0.06527 0.01928 0.05095 0.01925 0.01186 0.01512 0.00962 0.00560 0.00600 0.00183 0.00760 0.00542 0.00310 0.00902 +68 0.01017 0.00754 0.01095 0.01047 0.01151 0.00899 0.00821 0.01210 0.01008 0.05360 0.01628 0.06134 0.01543 0.05446 0.56072 0.00778 0.12429 0.00686 0.00349 0.00574 +69 0.00732 0.00608 0.00642 0.00652 0.00839 0.00518 0.00490 0.00896 0.01382 0.01682 0.10666 0.09972 0.63124 0.01529 0.00719 0.00207 0.00315 0.03947 0.00566 0.00513 +70 0.05346 0.01216 0.04147 0.01100 0.01465 0.07262 0.04681 0.04462 0.08411 0.17906 0.21433 0.03885 0.05147 0.00856 0.00610 0.00177 0.00522 0.00723 0.00555 0.10096 +71 0.02021 0.01116 0.01540 0.01223 0.01617 0.01068 0.07957 0.16307 0.02964 0.35335 0.04532 0.15812 0.01917 0.00933 0.00644 0.00195 0.00552 0.00814 0.00625 0.02828 +72 0.00738 0.00531 0.00701 0.00826 0.00872 0.00493 0.00556 0.00854 0.01187 0.01584 0.07069 0.72308 0.06374 0.01839 0.00763 0.00240 0.00344 0.01664 0.00564 0.00493 +73 0.00829 0.00642 0.00760 0.00739 0.00903 0.00591 0.00550 0.01129 0.05404 0.02081 0.41939 0.11000 0.28500 0.01361 0.00710 0.00199 0.00307 0.01179 0.00616 0.00562 +74 0.01389 0.01165 0.01356 0.00996 0.01493 0.01003 0.00805 0.10978 0.01438 0.02173 0.01103 0.01277 0.00903 0.00518 0.00555 0.00111 0.04980 0.00391 0.00383 0.66983 +75 0.00910 0.00884 0.05542 0.01163 0.01350 0.00755 0.11769 0.01189 0.04925 0.01655 0.02773 0.55845 0.03153 0.04049 0.00814 0.00244 0.00497 0.01403 0.00498 0.00581 +76 0.00898 0.00629 0.00772 0.00735 0.00905 0.00562 0.00551 0.01130 0.01574 0.05878 0.46836 0.09204 0.25434 0.01330 0.00708 0.00196 0.00305 0.01153 0.00630 0.00569 +77 0.00741 0.00527 0.00696 0.00827 0.00859 0.00494 0.00547 0.00840 0.01135 0.01513 0.03230 0.73973 0.03871 0.06525 0.00906 0.00265 0.00363 0.01660 0.00547 0.00481 +78 0.01500 0.05614 0.03621 0.02601 0.31926 0.03841 0.21329 0.01912 0.03917 0.05277 0.01390 0.01969 0.01181 0.00670 0.00705 0.00196 0.04677 0.06478 0.00348 0.00850 +79 0.00966 0.00688 0.00957 0.01091 0.01224 0.00688 0.00946 0.01232 0.01365 0.01776 0.03136 0.06677 0.03413 0.04610 0.00916 0.00289 0.00555 0.68377 0.00547 0.00547 +80 0.00956 0.00683 0.00954 0.01092 0.01225 0.00681 0.00945 0.01223 0.01371 0.01785 0.03193 0.10964 0.03492 0.01675 0.00827 0.00275 0.00542 0.67015 0.00554 0.00550 +81 0.01635 0.01130 0.01265 0.01110 0.01442 0.01232 0.00870 0.02831 0.48753 0.16317 0.10102 0.02446 0.02163 0.00840 0.00611 0.00196 0.00452 0.00703 0.04996 0.00904 +82 0.01576 0.70637 0.07048 0.01154 0.01694 0.02278 0.05283 0.01814 0.01236 0.01471 0.00872 0.01020 0.00780 0.00517 0.00415 0.00136 0.00678 0.00351 0.00260 0.00781 +83 0.00737 0.00557 0.00684 0.00782 0.00872 0.00504 0.00547 0.00864 0.01228 0.01575 0.04142 0.53390 0.25190 0.01766 0.00754 0.00233 0.00345 0.04773 0.00558 0.00497 +84 0.01394 0.24861 0.48189 0.01523 0.02271 0.01712 0.03994 0.06168 0.01355 0.01879 0.01036 0.01204 0.00785 0.00562 0.00524 0.00173 0.00809 0.00423 0.00277 0.00861 +85 0.01396 0.38973 0.41538 0.01392 0.02104 0.01860 0.01660 0.01856 0.01248 0.01674 0.00965 0.01126 0.00767 0.00545 0.00484 0.00161 0.00773 0.00387 0.00256 0.00834 +86 0.01626 0.65695 0.09673 0.01137 0.01668 0.08652 0.01150 0.01862 0.01268 0.01465 0.00867 0.01003 0.00771 0.00529 0.00416 0.00137 0.00704 0.00339 0.00262 0.00776 +87 0.01270 0.07959 0.47798 0.07834 0.02408 0.01363 0.01768 0.03980 0.01305 0.01908 0.01071 0.01277 0.00799 0.00550 0.00538 0.00167 0.00772 0.00429 0.00286 0.16518 +88 0.04775 0.21386 0.17535 0.02013 0.23369 0.11190 0.01506 0.02006 0.01371 0.07938 0.01114 0.01288 0.00879 0.00567 0.00524 0.00166 0.00754 0.00442 0.00320 0.00856 +89 0.01045 0.00522 0.00784 0.00784 0.00784 0.00522 0.00522 0.00784 0.00784 0.01045 0.01045 0.01829 0.01045 0.02090 0.02351 0.82497 0.00522 0.00522 0.00261 0.00261 +90 0.02262 0.08058 0.01790 0.01272 0.01736 0.05097 0.01059 0.46975 0.02365 0.18285 0.01714 0.01654 0.03492 0.00731 0.00585 0.00177 0.00637 0.00553 0.00588 0.00970 +91 0.01219 0.01006 0.03894 0.00981 0.01199 0.01003 0.00763 0.10928 0.19097 0.02176 0.17696 0.05159 0.02762 0.23807 0.01364 0.00314 0.00508 0.04924 0.00531 0.00670 +92 0.02250 0.01577 0.01742 0.01366 0.01820 0.07812 0.04891 0.38719 0.10201 0.20732 0.01724 0.01658 0.01199 0.00718 0.00604 0.00184 0.00659 0.00568 0.00597 0.00977 +93 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +94 0.01310 0.06437 0.44728 0.01547 0.04896 0.11575 0.01683 0.01813 0.01408 0.01905 0.13857 0.01878 0.03011 0.00705 0.00585 0.00182 0.00781 0.00560 0.00340 0.00797 +95 0.00874 0.00624 0.00681 0.00664 0.00858 0.00540 0.00499 0.01059 0.01420 0.05734 0.15833 0.08821 0.50676 0.01387 0.00684 0.00197 0.00313 0.01170 0.07419 0.00548 + +[dist] +# distance from previous block +# +2 5 + +[block] +# block no. 6 follows, 38 sequences, length 15 +# corresponding to MSA columns: +# 464-478 +name=unknown_G +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01574 0.72742 0.09331 0.01088 0.01634 0.02297 0.01131 0.01810 0.01226 0.01457 0.00857 0.00991 0.00771 0.00520 0.00402 0.00134 0.00664 0.00332 0.00257 0.00782 +1 0.01987 0.02137 0.01722 0.01501 0.01747 0.40782 0.01180 0.08133 0.03663 0.06908 0.01078 0.01284 0.00881 0.00770 0.00974 0.00193 0.23491 0.00465 0.00360 0.00744 +2 0.01709 0.53955 0.09241 0.01169 0.01705 0.02158 0.01156 0.16540 0.03949 0.01984 0.01036 0.01133 0.00858 0.00572 0.00454 0.00147 0.00663 0.00390 0.00340 0.00840 +3 0.01916 0.19976 0.01905 0.01163 0.01586 0.01717 0.00990 0.40702 0.02121 0.05975 0.01518 0.06571 0.01235 0.00749 0.00542 0.00168 0.00590 0.00572 0.09126 0.00879 +4 0.02053 0.07979 0.01739 0.01415 0.01773 0.59956 0.01086 0.02228 0.01603 0.01541 0.00944 0.01101 0.00792 0.00587 0.00517 0.00143 0.00959 0.00378 0.00313 0.12894 +5 0.02099 0.02202 0.01598 0.01387 0.01738 0.45862 0.01069 0.12555 0.04671 0.08182 0.01243 0.01362 0.00971 0.00900 0.05611 0.00213 0.00941 0.00455 0.00405 0.06538 +6 0.00842 0.00615 0.00792 0.00747 0.00893 0.00564 0.00561 0.01118 0.01682 0.02362 0.70402 0.04576 0.10094 0.01249 0.00710 0.00190 0.00285 0.01100 0.00656 0.00564 +7 0.00920 0.00640 0.00768 0.00721 0.00908 0.00566 0.00546 0.01150 0.01576 0.06979 0.43432 0.04831 0.32119 0.01311 0.00703 0.00194 0.00307 0.01126 0.00628 0.00575 +8 0.17441 0.01049 0.01302 0.01019 0.01467 0.00969 0.00842 0.02718 0.01594 0.62172 0.02092 0.01851 0.01336 0.00710 0.00562 0.00186 0.00503 0.00554 0.00676 0.00956 +9 0.01207 0.03112 0.75741 0.01715 0.02604 0.01397 0.02223 0.01905 0.01270 0.01905 0.01080 0.01270 0.00762 0.00572 0.00572 0.00191 0.00889 0.00445 0.00254 0.00889 +10 0.02318 0.01635 0.01774 0.01360 0.01840 0.01791 0.01124 0.67763 0.02744 0.09247 0.01515 0.01490 0.01058 0.00724 0.00602 0.00181 0.00651 0.00546 0.00613 0.01023 +11 0.02540 0.01279 0.01554 0.01191 0.01663 0.01263 0.00984 0.30009 0.02149 0.47842 0.02015 0.01815 0.01309 0.00736 0.00604 0.00184 0.00570 0.00581 0.00689 0.01023 +12 0.00745 0.00529 0.00695 0.00822 0.00854 0.00497 0.00542 0.00841 0.01129 0.01505 0.03197 0.72236 0.03829 0.08318 0.00960 0.00273 0.00369 0.01640 0.00542 0.00478 +13 0.01547 0.72648 0.02944 0.00998 0.01470 0.02230 0.00974 0.01724 0.01193 0.01395 0.00925 0.01213 0.00890 0.07063 0.00610 0.00167 0.00638 0.00368 0.00266 0.00738 +14 0.01136 0.01069 0.01804 0.77412 0.04143 0.01337 0.01671 0.01537 0.01203 0.01537 0.01069 0.01604 0.00802 0.00601 0.00601 0.00200 0.00802 0.00535 0.00267 0.00668 + +[dist] +# distance from previous block +# +2 24 + +[block] +# block no. 7 follows, 38 sequences, length 33 +# corresponding to MSA columns: +# 503-535 +name=unknown_H +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01935 0.01454 0.04922 0.01324 0.01801 0.01412 0.06428 0.30282 0.09742 0.15448 0.01730 0.01724 0.03139 0.00703 0.00629 0.00175 0.02794 0.00567 0.00542 0.13249 +1 0.01623 0.67705 0.02890 0.01079 0.01552 0.08638 0.01037 0.01818 0.01274 0.01445 0.00993 0.01343 0.00942 0.00596 0.00428 0.00140 0.00676 0.04790 0.00281 0.00752 +2 0.01045 0.00522 0.00784 0.00784 0.00784 0.00522 0.00522 0.00784 0.00784 0.01045 0.01045 0.01829 0.01045 0.02090 0.02351 0.82497 0.00522 0.00522 0.00261 0.00261 +3 0.01394 0.01318 0.02227 0.15310 0.59042 0.01361 0.01725 0.01735 0.01312 0.01846 0.01170 0.01662 0.01007 0.05488 0.00752 0.00208 0.00720 0.00557 0.00297 0.00870 +4 0.01102 0.01021 0.01669 0.09192 0.01817 0.01225 0.11853 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38 sequences, length 18 +# corresponding to MSA columns: +# 713-730 +name=unknown_J +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00875 0.00583 0.00656 0.00656 0.00656 0.00583 0.00365 0.00875 0.00875 0.01166 0.01895 0.03937 0.02187 0.78858 0.03062 0.00583 0.00583 0.00875 0.00365 0.00365 +1 0.00897 0.00721 0.00807 0.00818 0.01007 0.00695 0.00640 0.01285 0.11340 0.01787 0.07652 0.05327 0.39663 0.07530 0.00910 0.00249 0.00406 0.17140 0.00554 0.00571 +2 0.32637 0.01172 0.01262 0.07405 0.01621 0.02920 0.00893 0.06188 0.05779 0.26349 0.04084 0.01621 0.01214 0.00692 0.00573 0.00191 0.03567 0.00504 0.00517 0.00812 +3 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +4 0.02699 0.01024 0.01396 0.01070 0.01536 0.00884 0.00884 0.02932 0.01722 0.75522 0.02373 0.02048 0.01489 0.00745 0.00605 0.00186 0.00512 0.00605 0.00745 0.01024 +5 0.20461 0.01504 0.01656 0.01301 0.01751 0.04206 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0.01147 0.01344 0.00826 0.00634 0.00729 0.00199 0.09364 0.00477 0.00302 0.00859 + +[dist] +# distance from previous block +# +0 4 + +[block] +# block no. 10 follows, 38 sequences, length 22 +# corresponding to MSA columns: +# 736-757 +name=unknown_K +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00751 0.00543 0.00715 0.00845 0.00899 0.00507 0.00586 0.00873 0.01185 0.01563 0.03479 0.68044 0.08377 0.01844 0.00769 0.00244 0.00363 0.07360 0.00558 0.00495 +1 0.01770 0.01125 0.01404 0.01032 0.01544 0.00938 0.02817 0.08133 0.01529 0.23805 0.01490 0.01511 0.01079 0.00559 0.00513 0.00129 0.00500 0.00456 0.00491 0.49176 +2 0.01602 0.58043 0.18016 0.01174 0.01762 0.02073 0.01266 0.01902 0.01267 0.06695 0.00994 0.01104 0.00820 0.00542 0.00440 0.00145 0.00685 0.00367 0.00291 0.00814 +3 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +4 0.01715 0.66826 0.02929 0.01097 0.01595 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sequences, length 37 +# corresponding to MSA columns: +# 768-804 +name=unknown_L +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.83108 0.01163 0.00884 0.00791 0.01163 0.01350 0.00651 0.01768 0.01024 0.02699 0.00838 0.00977 0.00651 0.00558 0.00372 0.00186 0.00465 0.00326 0.00372 0.00651 +1 0.01449 0.01384 0.02337 0.11975 0.64837 0.01421 0.01799 0.01852 0.03549 0.01933 0.01164 0.01525 0.00963 0.00552 0.00597 0.00182 0.00717 0.00540 0.00304 0.00921 +2 0.01423 0.05521 0.11490 0.02315 0.05654 0.03663 0.51256 0.01892 0.01362 0.01852 0.01139 0.01508 0.00877 0.00560 0.00765 0.00200 0.06788 0.00632 0.00293 0.00809 +3 0.00875 0.00583 0.00656 0.00656 0.00656 0.00583 0.00365 0.00875 0.00875 0.01166 0.01895 0.03937 0.02187 0.78858 0.03062 0.00583 0.00583 0.00875 0.00365 0.00365 +4 0.01303 0.02770 0.60461 0.01865 0.04832 0.01396 0.12117 0.01946 0.01312 0.04777 0.01151 0.01357 0.00817 0.00568 0.00593 0.00192 0.00887 0.00491 0.00282 0.00885 +5 0.01354 0.01469 0.03002 0.14428 0.03106 0.01408 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0.00558 0.00163 0.00983 0.00436 0.00354 0.00753 +30 0.01389 0.37581 0.42867 0.01404 0.02124 0.01842 0.01682 0.01858 0.01248 0.01683 0.00969 0.01132 0.00767 0.00546 0.00488 0.00163 0.00778 0.00389 0.00256 0.00836 +31 0.01473 0.53581 0.27606 0.01260 0.01901 0.02049 0.01431 0.01836 0.01238 0.01580 0.00918 0.01068 0.00769 0.00534 0.00449 0.00150 0.00726 0.00363 0.00256 0.00811 +32 0.00904 0.00648 0.00885 0.00966 0.01093 0.00629 0.00795 0.01161 0.01454 0.01956 0.25231 0.15025 0.04208 0.01557 0.00786 0.00246 0.00445 0.40877 0.00588 0.00550 +33 0.01299 0.06889 0.42938 0.01900 0.08189 0.01414 0.16046 0.01855 0.01302 0.01892 0.01096 0.01337 0.00822 0.00538 0.00576 0.00177 0.00836 0.00487 0.00279 0.10127 +34 0.32014 0.31957 0.06203 0.00982 0.01431 0.01731 0.00922 0.06952 0.02711 0.02170 0.04364 0.01389 0.03865 0.00626 0.00439 0.00165 0.00560 0.00424 0.00362 0.00736 +35 0.00825 0.00895 0.09209 0.00818 0.01068 0.00636 0.00723 0.01083 0.01450 0.01901 0.26087 0.08693 0.37976 0.01352 0.00704 0.00204 0.00380 0.04870 0.00555 0.00571 +36 0.01481 0.10788 0.55377 0.01550 0.02328 0.01470 0.01883 0.06162 0.01407 0.10309 0.01222 0.01336 0.00861 0.00594 0.00558 0.00183 0.00807 0.00455 0.00330 0.00900 + +[dist] +# distance from previous block +# +0 1 + +[block] +# block no. 12 follows, 38 sequences, length 12 +# corresponding to MSA columns: +# 806-817 +name=unknown_M +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.04924 0.53400 0.06541 0.01184 0.01663 0.20482 0.01110 0.01953 0.01336 0.01505 0.00872 0.01011 0.00767 0.00545 0.00434 0.00141 0.00758 0.00344 0.00275 0.00755 +1 0.01074 0.10954 0.17968 0.01048 0.01399 0.01030 0.01018 0.05063 0.01471 0.02029 0.28097 0.17377 0.04971 0.02999 0.00702 0.00202 0.00504 0.00938 0.00487 0.00667 +2 0.01522 0.52612 0.24668 0.01260 0.01876 0.05939 0.01391 0.01863 0.01262 0.01564 0.00914 0.01062 0.00769 0.00537 0.00449 0.00148 0.00739 0.00362 0.00259 0.00803 +3 0.01045 0.00522 0.00784 0.00784 0.00784 0.00522 0.00522 0.00784 0.00784 0.01045 0.01045 0.01829 0.01045 0.02090 0.02351 0.82497 0.00522 0.00522 0.00261 0.00261 +4 0.01541 0.01819 0.15420 0.01904 0.02459 0.01572 0.31276 0.14462 0.14753 0.02328 0.01433 0.01626 0.01066 0.00640 0.00716 0.00200 0.04885 0.00619 0.00401 0.00879 +5 0.00872 0.00594 0.00712 0.00712 0.00732 0.00614 0.00435 0.00911 0.00891 0.01208 0.01844 0.03652 0.02063 0.65400 0.16351 0.00653 0.00769 0.00833 0.00357 0.00396 +6 0.00799 0.00607 0.00735 0.00715 0.00870 0.00544 0.00532 0.01030 0.01562 0.02106 0.48352 0.09686 0.27539 0.01365 0.00714 0.00197 0.00295 0.01186 0.00623 0.00544 +7 0.02098 0.01794 0.01754 0.01395 0.01840 0.14039 0.03216 0.46801 0.10562 0.03091 0.01442 0.01468 0.01062 0.00692 0.00586 0.00174 0.00707 0.00525 0.00530 0.06224 +8 0.00770 0.00541 0.00693 0.00794 0.00825 0.00513 0.00515 0.00858 0.01112 0.01489 0.05929 0.58672 0.03646 0.19165 0.01281 0.00318 0.00399 0.01497 0.00519 0.00464 +9 0.63926 0.15386 0.01340 0.00876 0.01270 0.05649 0.00748 0.01809 0.01097 0.02399 0.00842 0.00981 0.00680 0.00554 0.00384 0.00174 0.00532 0.00328 0.00348 0.00676 +10 0.01319 0.24393 0.55444 0.01523 0.02307 0.01672 0.01889 0.01876 0.01257 0.01768 0.01012 0.01185 0.00765 0.00556 0.00520 0.00173 0.00820 0.00410 0.00255 0.00856 +11 0.01401 0.01567 0.03241 0.02362 0.02861 0.01579 0.59959 0.01840 0.01330 0.01840 0.01140 0.01567 0.00890 0.00606 0.00939 0.00214 0.14906 0.00677 0.00297 0.00784 + +[dist] +# distance from previous block +# +0 34 + +[block] +# block no. 13 follows, 38 sequences, length 7 +# corresponding to MSA columns: +# 852-858 +name=unknown_N +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.02012 0.00936 0.01220 0.00990 0.01344 0.00859 0.00796 0.05932 0.05256 0.44265 0.26181 0.02832 0.02861 0.00907 0.00640 0.00188 0.00443 0.00764 0.00704 0.00870 +1 0.01415 0.02595 0.51506 0.02031 0.15852 0.01471 0.01997 0.12229 0.01515 0.02190 0.01142 0.01336 0.00835 0.00587 0.00580 0.00187 0.00824 0.00475 0.00313 0.00920 +2 0.01303 0.11171 0.48496 0.01737 0.02498 0.01509 0.15003 0.01930 0.04021 0.01880 0.01129 0.01337 0.00837 0.00557 0.00573 0.00182 0.00851 0.00485 0.00281 0.04221 +3 0.01001 0.00772 0.00933 0.00865 0.01053 0.00783 0.00657 0.01612 0.18442 0.02436 0.58044 0.03973 0.04787 0.01134 0.00687 0.00193 0.00328 0.00994 0.00651 0.00657 +4 0.01087 0.01014 0.00951 0.00917 0.01071 0.14530 0.00676 0.01316 0.01605 0.02084 0.48493 0.17000 0.04472 0.01234 0.00689 0.00193 0.00443 0.01069 0.00579 0.00577 +5 0.01337 0.01289 0.02236 0.34612 0.41261 0.01395 0.05743 0.01721 0.01302 0.01783 0.01110 0.01545 0.00887 0.00562 0.00604 0.00189 0.00768 0.00545 0.00285 0.00825 +6 0.00852 0.00699 0.01135 0.01077 0.01212 0.00653 0.11256 0.01042 0.01271 0.01721 0.13381 0.56369 0.03772 0.01586 0.00751 0.00230 0.00438 0.01472 0.00536 0.00548 + +[dist] +# distance from previous block +# +20 90 + +[block] +# block no. 14 follows, 38 sequences, length 73 +# corresponding to MSA columns: +# 949-1021 +name=unknown_O +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00941 0.00672 0.00937 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0.61204 +60 0.01004 0.00586 0.00818 0.00795 0.00854 0.00576 0.00550 0.00947 0.02570 0.01386 0.14112 0.03993 0.02014 0.06398 0.05441 0.52765 0.00528 0.00669 0.00358 0.03636 +61 0.02265 0.01278 0.01513 0.01168 0.01636 0.01262 0.00956 0.26569 0.08545 0.35211 0.01898 0.01758 0.01286 0.00705 0.00584 0.00173 0.00551 0.00558 0.00635 0.11449 +62 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +63 0.01183 0.01146 0.01697 0.30728 0.02487 0.01506 0.01362 0.01420 0.01078 0.01501 0.01459 0.01900 0.08630 0.00929 0.01311 0.00233 0.39880 0.00608 0.00296 0.00646 +64 0.01420 0.01623 0.03550 0.02535 0.03144 0.01521 0.72921 0.01927 0.01420 0.01927 0.01217 0.01623 0.00913 0.00507 0.00710 0.00203 0.01014 0.00710 0.00304 0.00811 +65 0.01045 0.00522 0.00784 0.00784 0.00784 0.00522 0.00522 0.00784 0.00784 0.01045 0.01045 0.01829 0.01045 0.02090 0.02351 0.82497 0.00522 0.00522 0.00261 0.00261 +66 0.37340 0.01084 0.01176 0.00950 0.01375 0.01085 0.00784 0.02431 0.01421 0.44150 0.01712 0.01586 0.01128 0.00664 0.00505 0.00186 0.00492 0.00485 0.00584 0.00863 +67 0.00741 0.00548 0.00693 0.00789 0.00864 0.00500 0.00541 0.00871 0.01244 0.01637 0.10773 0.58416 0.16666 0.01757 0.00752 0.00232 0.00335 0.01572 0.00569 0.00500 +68 0.01121 0.00561 0.00561 0.00561 0.00701 0.00561 0.00421 0.01402 0.01262 0.02243 0.01962 0.02243 0.01542 0.00701 0.00421 0.00140 0.00280 0.00561 0.82198 0.00561 +69 0.00877 0.00620 0.00777 0.00735 0.00876 0.00569 0.00539 0.01113 0.01575 0.03766 0.57071 0.04541 0.13715 0.09468 0.00956 0.00233 0.00323 0.01077 0.00620 0.00549 +70 0.00868 0.00587 0.00691 0.00696 0.00708 0.00598 0.00413 0.00895 0.00895 0.01205 0.01919 0.06567 0.02182 0.68105 0.10742 0.00611 0.00683 0.00882 0.00367 0.00387 +71 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +72 0.01608 0.79220 0.03152 0.01029 0.01544 0.02380 0.01029 0.01801 0.01222 0.01415 0.00836 0.00965 0.00772 0.00515 0.00386 0.00129 0.00643 0.00322 0.00257 0.00772 +73 0.00840 0.00641 0.00777 0.00780 0.00923 0.00603 0.00570 0.01155 0.06806 0.02035 0.37117 0.23029 0.19630 0.01425 0.00717 0.00207 0.00319 0.01251 0.00611 0.00564 +74 0.00794 0.00682 0.00689 0.00674 0.00892 0.00612 0.00509 0.01110 0.09056 0.01719 0.05708 0.05414 0.67136 0.01449 0.00701 0.00203 0.00323 0.01207 0.00564 0.00555 +75 0.01207 0.03112 0.75741 0.01715 0.02604 0.01397 0.02223 0.01905 0.01270 0.01905 0.01080 0.01270 0.00762 0.00572 0.00572 0.00191 0.00889 0.00445 0.00254 0.00889 +76 0.00897 0.00595 0.00718 0.00718 0.00757 0.00620 0.00460 0.00976 0.00937 0.01333 0.01837 0.03395 0.01962 0.53477 0.19680 0.00625 0.00788 0.00789 0.09012 0.00425 +77 0.44268 0.01022 0.00951 0.00831 0.01169 0.01111 0.00671 0.02026 0.07286 0.16074 0.01492 0.01546 0.01092 0.00644 0.00445 0.00178 0.00436 0.00456 0.17575 0.00727 +78 0.83108 0.01163 0.00884 0.00791 0.01163 0.01350 0.00651 0.01768 0.01024 0.02699 0.00838 0.00977 0.00651 0.00558 0.00372 0.00186 0.00465 0.00326 0.00372 0.00651 +79 0.01401 0.01064 0.01263 0.00910 0.01437 0.00811 0.00731 0.01665 0.01298 0.09742 0.01207 0.01332 0.00954 0.00477 0.00462 0.00099 0.00453 0.00383 0.00397 0.73913 +80 0.05878 0.06892 0.21561 0.01183 0.01697 0.01122 0.01195 0.04795 0.01546 0.30144 0.12772 0.05108 0.01915 0.00790 0.00591 0.00186 0.00586 0.00643 0.00534 0.00861 +81 0.01396 0.00713 0.00764 0.00690 0.00896 0.00715 0.00536 0.08164 0.01454 0.10137 0.01958 0.02149 0.01489 0.00707 0.00457 0.00149 0.00340 0.00564 0.66070 0.00652 +82 0.01990 0.00905 0.01184 0.00975 0.01323 0.00819 0.00779 0.02333 0.07006 0.46008 0.19531 0.06271 0.06284 0.00954 0.00643 0.00192 0.00438 0.00807 0.00698 0.00862 + +[dist] +# distance from previous block +# +0 1 + +[block] +# block no. 16 follows, 38 sequences, length 11 +# corresponding to MSA columns: +# 1107-1117 +name=unknown_Q +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01260 0.01137 0.01774 0.11464 0.31249 0.01106 0.04406 0.01535 0.01221 0.01743 0.01273 0.01966 0.01176 0.16877 0.01083 0.00247 0.00651 0.00574 0.00321 0.18936 +1 0.00828 0.00637 0.00892 0.00892 0.01020 0.00701 0.00690 0.01030 0.01051 0.01444 0.02547 0.03079 0.16821 0.03888 0.60655 0.00807 0.01339 0.00775 0.00372 0.00531 +2 0.01440 0.01537 0.02990 0.02434 0.11631 0.01590 0.46454 0.04555 0.01364 0.01903 0.01126 0.01535 0.00896 0.00633 0.00956 0.00212 0.16988 0.00644 0.00306 0.00805 +3 0.05324 0.16223 0.19364 0.01474 0.01975 0.01385 0.16772 0.01665 0.01261 0.04215 0.01553 0.17420 0.01493 0.00833 0.00631 0.00190 0.02759 0.00741 0.00356 0.04364 +4 0.18000 0.00729 0.00799 0.00775 0.00947 0.00766 0.00581 0.01151 0.01173 0.01850 0.14190 0.05286 0.17449 0.12839 0.20485 0.00448 0.00711 0.00839 0.00448 0.00534 +5 0.01161 0.01060 0.00875 0.00843 0.00907 0.16423 0.00531 0.01194 0.01048 0.01230 0.01694 0.03341 0.01892 0.62522 0.02536 0.00494 0.00688 0.00773 0.00353 0.00434 +6 0.01134 0.00745 0.00922 0.00947 0.01098 0.00747 0.00681 0.01587 0.16416 0.10852 0.03019 0.53161 0.03225 0.01521 0.00715 0.00229 0.00396 0.01359 0.00593 0.00651 +7 0.01257 0.10831 0.04758 0.37384 0.02961 0.01351 0.09223 0.01621 0.01243 0.01687 0.01057 0.01424 0.00832 0.00539 0.00546 0.00163 0.00718 0.00479 0.00292 0.21634 +8 0.01728 0.01199 0.01469 0.01370 0.10569 0.03183 0.00959 0.02294 0.16592 0.20869 0.01694 0.01685 0.01246 0.00615 0.00542 0.00151 0.00520 0.00511 0.00500 0.32302 +9 0.00834 0.00592 0.00767 0.00870 0.00938 0.00572 0.00638 0.00972 0.01177 0.01544 0.03130 0.37077 0.07302 0.17870 0.01263 0.00323 0.00458 0.22674 0.00517 0.00484 +10 0.00853 0.00601 0.00729 0.00751 0.00892 0.00535 0.00542 0.01025 0.01394 0.05439 0.22348 0.31217 0.28386 0.01539 0.00726 0.00213 0.00325 0.01348 0.00594 0.00542 + +[dist] +# distance from previous block +# +0 2 + +[block] +# block no. 17 follows, 38 sequences, length 20 +# corresponding to MSA columns: +# 1120-1139 +name=unknown_R +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00781 0.00605 0.00711 0.00700 0.00859 0.00535 0.00519 0.00993 0.01514 0.01999 0.39174 0.11224 0.35398 0.01411 0.00715 0.00200 0.00298 0.01218 0.00609 0.00535 +1 0.04398 0.01154 0.01371 0.04978 0.08546 0.03919 0.03390 0.22525 0.01783 0.04414 0.07602 0.06376 0.01693 0.00784 0.00560 0.00174 0.00530 0.00652 0.24385 0.00764 +2 0.01715 0.53187 0.06252 0.01216 0.01669 0.19090 0.01136 0.01920 0.01315 0.01454 0.00866 0.01030 0.00773 0.00576 0.00533 0.00146 0.05744 0.00356 0.00269 0.00753 +3 0.01452 0.01419 0.04508 0.02711 0.45243 0.01376 0.03972 0.02120 0.17826 0.02086 0.01424 0.01630 0.01139 0.00589 0.00585 0.00176 0.00646 0.00551 0.00374 0.10171 +4 0.02027 0.01587 0.01802 0.01423 0.01866 0.05030 0.06910 0.43007 0.18706 0.07037 0.01684 0.01676 0.01222 0.00803 0.02218 0.00203 0.00680 0.00585 0.00569 0.00965 +5 0.03653 0.00982 0.01247 0.00989 0.01386 0.00881 0.00797 0.03411 0.01343 0.23486 0.01570 0.01735 0.01200 0.01481 0.17775 0.00326 0.02912 0.00503 0.00466 0.33857 +6 0.01243 0.11567 0.46759 0.01434 0.02082 0.01345 0.01686 0.01750 0.01216 0.05040 0.01229 0.01516 0.00964 0.01466 0.17761 0.00359 0.01006 0.00482 0.00292 0.00801 +7 0.00810 0.00613 0.00747 0.00714 0.00874 0.00550 0.00535 0.01056 0.01606 0.02183 0.54769 0.04871 0.25838 0.01315 0.00710 0.00193 0.00290 0.01141 0.00632 0.00550 +8 0.01490 0.01059 0.01712 0.60103 0.03552 0.01234 0.01492 0.01853 0.01321 0.18312 0.01365 0.01704 0.00958 0.00634 0.00602 0.00197 0.00736 0.00551 0.00376 0.00749 +9 0.01436 0.01579 0.03298 0.02798 0.19460 0.01500 0.56806 0.01909 0.01409 0.01936 0.01198 0.01592 0.00922 0.00514 0.00684 0.00197 0.00946 0.00671 0.00303 0.00843 +10 0.02280 0.00931 0.01262 0.00999 0.01391 0.00812 0.00812 0.02524 0.01718 0.58946 0.18792 0.02602 0.02438 0.00855 0.00629 0.00187 0.00460 0.00714 0.00726 0.00920 +11 0.20856 0.01088 0.01291 0.01019 0.01456 0.01045 0.00840 0.07160 0.01635 0.52474 0.03844 0.01829 0.01378 0.00714 0.00555 0.00186 0.00505 0.00550 0.00649 0.00927 +12 0.02363 0.01390 0.01391 0.01139 0.01529 0.17976 0.00907 0.02585 0.01716 0.49500 0.11191 0.02138 0.01856 0.00778 0.00604 0.00179 0.00613 0.00617 0.00636 0.00892 +13 0.00831 0.00617 0.00906 0.00938 0.01028 0.00692 0.00708 0.01021 0.01009 0.01428 0.01998 0.19618 0.02065 0.03916 0.59309 0.00803 0.01325 0.00886 0.00376 0.00526 +14 0.83108 0.01163 0.00884 0.00791 0.01163 0.01350 0.00651 0.01768 0.01024 0.02699 0.00838 0.00977 0.00651 0.00558 0.00372 0.00186 0.00465 0.00326 0.00372 0.00651 +15 0.01120 0.01134 0.17631 0.00852 0.01146 0.00744 0.00843 0.01442 0.01219 0.02038 0.01734 0.04789 0.01412 0.00834 0.00633 0.07196 0.00442 0.00573 0.53613 0.00607 +16 0.83108 0.01163 0.00884 0.00791 0.01163 0.01350 0.00651 0.01768 0.01024 0.02699 0.00838 0.00977 0.00651 0.00558 0.00372 0.00186 0.00465 0.00326 0.00372 0.00651 +17 0.01078 0.00844 0.01205 0.01442 0.17769 0.00811 0.00877 0.01430 0.04852 0.04813 0.46685 0.03731 0.09940 0.01061 0.00676 0.00189 0.00400 0.00942 0.00572 0.00683 +18 0.00733 0.00524 0.00698 0.00838 0.00873 0.00489 0.00558 0.00838 0.01152 0.01536 0.03316 0.78466 0.03979 0.01885 0.00768 0.00244 0.00349 0.01710 0.00558 0.00489 +19 0.47108 0.01101 0.01113 0.00916 0.01330 0.01141 0.00756 0.02289 0.01336 0.35303 0.01525 0.01456 0.01027 0.00642 0.00476 0.00186 0.00486 0.00451 0.00539 0.00818 + +[dist] +# distance from previous block +# +0 1 + +[block] +# block no. 18 follows, 38 sequences, length 26 +# corresponding to MSA columns: +# 1141-1166 +name=unknown_S +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01379 0.01464 0.02948 0.02675 0.22576 0.01398 0.45555 0.01815 0.01402 0.01917 0.01526 0.02116 0.04027 0.00637 0.00687 0.00201 0.00872 0.05656 0.00330 0.00820 +1 0.01014 0.00833 0.01039 0.14077 0.01435 0.03848 0.00750 0.01124 0.00978 0.01292 0.01582 0.03017 0.01692 0.47501 0.09737 0.00508 0.08026 0.00741 0.00332 0.00475 +2 0.74565 0.01149 0.00939 0.00821 0.01203 0.01300 0.00676 0.01892 0.01098 0.10436 0.01001 0.01091 0.00740 0.00578 0.00397 0.00186 0.00470 0.00355 0.00412 0.00691 +3 0.55265 0.08979 0.01234 0.00894 0.01294 0.01383 0.00751 0.02074 0.06323 0.15145 0.01217 0.01251 0.00892 0.00604 0.00431 0.00182 0.00492 0.00399 0.00442 0.00749 +4 0.01478 0.24294 0.40097 0.01372 0.02076 0.01564 0.01596 0.01943 0.01301 0.09360 0.01143 0.01261 0.00853 0.00561 0.00510 0.00162 0.00737 0.00417 0.00316 0.08958 +5 0.06031 0.01363 0.02148 0.01609 0.02091 0.05666 0.26929 0.06069 0.01634 0.31936 0.06862 0.01925 0.01468 0.00675 0.00635 0.00190 0.00717 0.00647 0.00528 0.00877 +6 0.15075 0.00678 0.00700 0.00698 0.00766 0.00706 0.00434 0.01026 0.00928 0.01468 0.01855 0.10902 0.02101 0.57602 0.02367 0.00481 0.00539 0.00864 0.00385 0.00427 +7 0.16413 0.01007 0.01248 0.00991 0.01407 0.00933 0.00812 0.02550 0.01599 0.55600 0.09372 0.02108 0.01764 0.00761 0.00575 0.00186 0.00481 0.00605 0.00672 0.00914 +8 0.15709 0.14609 0.01930 0.03409 0.01704 0.01368 0.15498 0.01764 0.01323 0.09313 0.11515 0.01876 0.01615 0.00709 0.00656 0.00182 0.06902 0.00583 0.08613 0.00722 +9 0.01875 0.14638 0.04574 0.01097 0.01509 0.01287 0.00944 0.02467 0.19063 0.30136 0.01946 0.01948 0.01428 0.03616 0.08254 0.00269 0.00652 0.00574 0.00543 0.03182 +10 0.01074 0.00647 0.00799 0.13881 0.01321 0.00688 0.00656 0.01358 0.01258 0.02057 0.04838 0.09868 0.01823 0.00823 0.00498 0.00163 0.00378 0.00692 0.56606 0.00572 +11 0.16544 0.01135 0.01362 0.01063 0.01515 0.01094 0.00878 0.11994 0.01747 0.53465 0.01985 0.01783 0.01283 0.00709 0.00564 0.00185 0.00524 0.00548 0.00661 0.00959 +12 0.01277 0.01924 0.26997 0.13967 0.05656 0.01322 0.21211 0.01806 0.02622 0.01875 0.01141 0.01443 0.00859 0.00540 0.00594 0.00178 0.00818 0.00524 0.00296 0.14949 +13 0.01984 0.00959 0.01310 0.14178 0.01839 0.00909 0.00936 0.04219 0.01594 0.44517 0.04631 0.02743 0.15753 0.00883 0.00627 0.00192 0.00520 0.00732 0.00620 0.00851 +14 0.00739 0.00572 0.00674 0.00731 0.00851 0.00507 0.00517 0.00887 0.01316 0.01688 0.13793 0.38205 0.34073 0.01647 0.00736 0.00220 0.00322 0.01443 0.00572 0.00507 +15 0.01291 0.01095 0.01271 0.00912 0.01444 0.00846 0.00731 0.04510 0.01314 0.02037 0.01085 0.01256 0.00897 0.00457 0.00452 0.00093 0.00455 0.00364 0.00367 0.79125 +16 0.01238 0.01047 0.01513 0.33930 0.08427 0.01191 0.01248 0.11505 0.06576 0.01956 0.01856 0.23222 0.01811 0.00989 0.00649 0.00209 0.00625 0.00876 0.00423 0.00710 +17 0.00822 0.00618 0.00793 0.00847 0.00968 0.00543 0.00585 0.00955 0.01168 0.01609 0.02927 0.65118 0.03445 0.01636 0.00712 0.00217 0.00366 0.01476 0.00524 0.14671 +18 0.01123 0.00744 0.01028 0.14079 0.01568 0.00752 0.00850 0.01408 0.01477 0.09286 0.26180 0.04128 0.09849 0.01138 0.00677 0.00206 0.00455 0.15681 0.08749 0.00621 +19 0.01629 0.05151 0.35443 0.01768 0.02466 0.01351 0.21663 0.02146 0.01415 0.19000 0.01409 0.01538 0.00974 0.00592 0.00611 0.00191 0.00827 0.00551 0.00382 0.00894 +20 0.15072 0.00713 0.00824 0.00802 0.00978 0.00710 0.00622 0.01231 0.01507 0.02317 0.47682 0.08583 0.06656 0.01210 0.00668 0.00202 0.00350 0.08710 0.00591 0.00574 +21 0.00735 0.00610 0.00643 0.00635 0.00827 0.00518 0.00476 0.00910 0.01429 0.01761 0.17968 0.05565 0.62902 0.01473 0.00711 0.00201 0.00301 0.01238 0.00577 0.00518 +22 0.02039 0.01952 0.01437 0.01269 0.01583 0.39372 0.00981 0.10400 0.04038 0.11561 0.01498 0.01727 0.01175 0.00712 0.00551 0.00166 0.00781 0.03429 0.14575 0.00756 +23 0.01688 0.58107 0.07316 0.01226 0.01767 0.02067 0.08296 0.01947 0.01301 0.09834 0.01062 0.01171 0.00866 0.00543 0.00454 0.00146 0.00680 0.00400 0.00317 0.00811 +24 0.15507 0.01121 0.01223 0.00909 0.01410 0.00963 0.00734 0.05921 0.01319 0.04582 0.01094 0.01239 0.00877 0.00491 0.00447 0.00115 0.00464 0.00370 0.00387 0.60825 +25 0.01318 0.23488 0.42693 0.05528 0.08770 0.01629 0.01766 0.01811 0.01267 0.01747 0.01216 0.01403 0.03724 0.00592 0.00530 0.00174 0.00779 0.00457 0.00272 0.00836 + +[dist] +# distance from previous block +# +0 4 + +[block] +# block no. 19 follows, 38 sequences, length 13 +# corresponding to MSA columns: +# 1171-1183 +name=unknown_T +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01219 0.05907 0.44134 0.26369 0.07224 0.01425 0.01966 0.01777 0.01252 0.01766 0.01068 0.01377 0.00786 0.00577 0.00574 0.00190 0.00839 0.00473 0.00261 0.00816 +1 0.01967 0.02392 0.01774 0.01653 0.05043 0.53319 0.01234 0.02124 0.01482 0.01488 0.00902 0.01164 0.00787 0.00731 0.00925 0.00185 0.21405 0.00431 0.00297 0.00698 +2 0.00756 0.00581 0.00692 0.00728 0.00856 0.00517 0.00522 0.00927 0.01383 0.01804 0.23466 0.30770 0.31689 0.01571 0.00730 0.00214 0.00315 0.01375 0.00586 0.00517 +3 0.23722 0.02271 0.01473 0.01316 0.01657 0.49787 0.01010 0.04532 0.01561 0.06131 0.01005 0.01123 0.00791 0.00614 0.00503 0.00166 0.00874 0.00389 0.00361 0.00714 +4 0.23493 0.01109 0.01227 0.00948 0.01414 0.01025 0.00774 0.05477 0.01422 0.26719 0.01460 0.01451 0.01033 0.00588 0.00487 0.00152 0.00483 0.00440 0.00502 0.29798 +5 0.01419 0.01775 0.21089 0.01354 0.01840 0.01470 0.01289 0.02854 0.54723 0.02354 0.02085 0.01986 0.01551 0.00751 0.00601 0.00200 0.00586 0.00618 0.00517 0.00935 +6 0.01263 0.02717 0.56593 0.01932 0.02747 0.01430 0.20975 0.01911 0.01310 0.01911 0.01116 0.01364 0.00802 0.00554 0.00608 0.00194 0.00922 0.00515 0.00267 0.00868 +7 0.23695 0.02415 0.01487 0.01349 0.01675 0.56525 0.01027 0.02234 0.01524 0.01798 0.00905 0.01056 0.00742 0.00604 0.00497 0.00163 0.00921 0.00371 0.00326 0.00685 +8 0.02604 0.01003 0.01366 0.01054 0.01503 0.00868 0.00868 0.02839 0.01721 0.71748 0.06111 0.02174 0.01705 0.00770 0.00610 0.00186 0.00500 0.00630 0.00740 0.01000 +9 0.01247 0.00720 0.00830 0.00740 0.01009 0.00611 0.00577 0.01428 0.01484 0.21273 0.09185 0.04720 0.51293 0.01299 0.00683 0.00198 0.00358 0.01083 0.00614 0.00648 +10 0.01919 0.01306 0.01468 0.01206 0.01567 0.01395 0.00960 0.46411 0.02265 0.10882 0.02040 0.21938 0.01857 0.01033 0.00646 0.00198 0.00563 0.00858 0.00606 0.00881 +11 0.02699 0.01024 0.01396 0.01070 0.01536 0.00884 0.00884 0.02932 0.01722 0.75522 0.02373 0.02048 0.01489 0.00745 0.00605 0.00186 0.00512 0.00605 0.00745 0.01024 +12 0.00811 0.00585 0.00735 0.00753 0.00844 0.00552 0.00523 0.00975 0.01326 0.01807 0.31084 0.24037 0.11402 0.16839 0.04726 0.00319 0.00424 0.01209 0.00550 0.00499 + +[dist] +# distance from previous block +# +0 9 + +[block] +# block no. 20 follows, 38 sequences, length 11 +# corresponding to MSA columns: +# 1193-1203 +name=unknown_U +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.02095 0.01188 0.01400 0.01161 0.01567 0.01231 0.00930 0.06686 0.36784 0.36467 0.02362 0.02112 0.01633 0.00778 0.00608 0.00195 0.00502 0.00638 0.00673 0.00989 +1 0.01424 0.01333 0.02121 0.02941 0.55346 0.01261 0.01542 0.01757 0.01337 0.01964 0.01115 0.01424 0.00936 0.00512 0.00555 0.00155 0.00642 0.00488 0.00314 0.22832 +2 0.00717 0.00586 0.00633 0.00671 0.00829 0.00503 0.00484 0.00856 0.01312 0.01601 0.05349 0.25280 0.55852 0.01620 0.00726 0.00214 0.00317 0.01388 0.00559 0.00503 +3 0.00774 0.00568 0.00729 0.00800 0.00891 0.00523 0.00569 0.00942 0.01340 0.01796 0.22840 0.45456 0.13687 0.01650 0.00748 0.00226 0.00336 0.05024 0.00586 0.00516 +4 0.01236 0.01132 0.01907 0.02631 0.44519 0.01117 0.05498 0.01527 0.01316 0.01833 0.01904 0.22610 0.01985 0.00996 0.00669 0.00206 0.00620 0.07117 0.00391 0.00785 +5 0.00872 0.00676 0.00967 0.00979 0.01051 0.00782 0.00738 0.01039 0.01008 0.01428 0.02000 0.22742 0.02129 0.06955 0.45310 0.00685 0.08801 0.00929 0.00382 0.00528 +6 0.02270 0.02213 0.01631 0.08152 0.01975 0.49516 0.01133 0.02467 0.01665 0.21337 0.01329 0.01389 0.00969 0.00652 0.00564 0.00167 0.00906 0.00459 0.00423 0.00782 +7 0.02065 0.01727 0.01659 0.01588 0.11501 0.24772 0.01110 0.07685 0.01642 0.21654 0.01400 0.01461 0.01029 0.00639 0.00615 0.00162 0.03978 0.00478 0.00453 0.14381 +8 0.01774 0.01315 0.01597 0.01665 0.17606 0.01408 0.01098 0.36053 0.04321 0.02936 0.01546 0.01693 0.01172 0.00679 0.00552 0.00170 0.00565 0.00550 0.22418 0.00881 +9 0.06134 0.01076 0.01382 0.01146 0.01494 0.05224 0.06318 0.05163 0.01556 0.39069 0.02337 0.22374 0.02009 0.01015 0.00641 0.00201 0.00543 0.00880 0.00611 0.00826 +10 0.22830 0.00740 0.00726 0.00726 0.00930 0.00737 0.00545 0.01134 0.01271 0.01991 0.12530 0.20074 0.31106 0.01307 0.00632 0.00206 0.00355 0.01090 0.00521 0.00550 + +[dist] +# distance from previous block +# +0 1 + +[block] +# block no. 21 follows, 38 sequences, length 24 +# corresponding to MSA columns: +# 1205-1228 +name=unknown_V +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.02001 0.02467 0.01729 0.15863 0.02280 0.59339 0.01264 0.02201 0.01579 0.01484 0.00951 0.01192 0.00781 0.00633 0.00610 0.00168 0.04048 0.00421 0.00300 0.00690 +1 0.00921 0.00721 0.01030 0.16812 0.01621 0.00738 0.00838 0.01210 0.01499 0.02069 0.43281 0.11648 0.04141 0.01184 0.00697 0.00203 0.00428 0.07486 0.00550 0.02924 +2 0.17036 0.58270 0.02606 0.01027 0.01498 0.08223 0.00969 0.01844 0.01224 0.01662 0.00844 0.00977 0.00750 0.00532 0.00396 0.00142 0.00646 0.00328 0.00283 0.00743 +3 0.01225 0.06591 0.72423 0.01683 0.02555 0.01442 0.02168 0.01900 0.01268 0.01883 0.01068 0.01256 0.00763 0.00569 0.00563 0.00188 0.00878 0.00439 0.00254 0.00884 +4 0.00824 0.00666 0.00767 0.00748 0.00952 0.00558 0.00544 0.00986 0.01281 0.01681 0.06291 0.30532 0.33759 0.01438 0.00681 0.00196 0.00346 0.01247 0.00524 0.15978 +5 0.01095 0.00653 0.00794 0.00789 0.00973 0.00571 0.00579 0.01243 0.01348 0.15530 0.04264 0.34605 0.32227 0.01523 0.00714 0.00217 0.00362 0.01323 0.00594 0.00597 +6 0.11398 0.01118 0.01425 0.23990 0.02254 0.01111 0.01041 0.06627 0.01364 0.09542 0.01200 0.01417 0.00905 0.00556 0.00511 0.00151 0.00577 0.00444 0.00388 0.33981 +7 0.01079 0.00879 0.01211 0.01135 0.01210 0.01056 0.00901 0.01259 0.01224 0.04542 0.18177 0.20380 0.02918 0.01480 0.04530 0.00272 0.29226 0.07454 0.00468 0.00598 +8 0.01046 0.00631 0.00964 0.15229 0.01406 0.00682 0.00724 0.00934 0.00871 0.01149 0.01128 0.01981 0.01105 0.08908 0.02087 0.59397 0.00581 0.00557 0.00272 0.00348 +9 0.01331 0.00689 0.00883 0.00838 0.00995 0.00631 0.00590 0.01451 0.01265 0.22271 0.05889 0.29289 0.05623 0.23813 0.01382 0.00322 0.00458 0.01113 0.00559 0.00607 +10 0.02166 0.01465 0.01800 0.01393 0.01859 0.01551 0.07690 0.39001 0.14433 0.19507 0.01801 0.01731 0.01254 0.00723 0.00614 0.00188 0.00630 0.00595 0.00608 0.00992 +11 0.01031 0.00564 0.00804 0.00815 0.00839 0.00564 0.00551 0.03384 0.00926 0.01236 0.01488 0.16273 0.01598 0.02002 0.01990 0.64031 0.00495 0.00747 0.00330 0.00331 +12 0.00733 0.00524 0.00698 0.00838 0.00873 0.00489 0.00558 0.00838 0.01152 0.01536 0.03316 0.78466 0.03979 0.01885 0.00768 0.00244 0.00349 0.01710 0.00558 0.00489 +13 0.01247 0.01069 0.01247 0.00891 0.01426 0.00802 0.00713 0.01515 0.01247 0.01960 0.01069 0.01247 0.00891 0.00446 0.00446 0.00089 0.00446 0.00356 0.00356 0.82536 +14 0.00904 0.00719 0.00847 0.00753 0.00993 0.00622 0.00574 0.01188 0.03656 0.02100 0.38685 0.04193 0.24863 0.01155 0.00657 0.00175 0.00326 0.00991 0.00573 0.16026 +15 0.21749 0.01039 0.01090 0.00949 0.01221 0.01130 0.00742 0.17572 0.08309 0.02547 0.18476 0.02330 0.04780 0.01064 0.00865 0.13840 0.00472 0.00651 0.00502 0.00673 +16 0.01399 0.02763 0.59409 0.01622 0.02410 0.01459 0.01966 0.15312 0.01578 0.02277 0.03493 0.01405 0.00968 0.00621 0.00582 0.00189 0.00827 0.00483 0.00333 0.00904 +17 0.01558 0.61804 0.05875 0.01338 0.01885 0.02182 0.14636 0.01829 0.01261 0.01530 0.00917 0.01100 0.00798 0.00515 0.00454 0.00145 0.00722 0.00399 0.00266 0.00784 +18 0.03107 0.12435 0.21748 0.02929 0.04145 0.01280 0.01239 0.04101 0.05280 0.01971 0.03883 0.03793 0.01160 0.00601 0.00512 0.00147 0.00610 0.00477 0.00351 0.30232 +19 0.01371 0.36393 0.29683 0.15693 0.02425 0.01821 0.01591 0.01790 0.01236 0.01619 0.00970 0.01198 0.00774 0.00552 0.00495 0.00165 0.00764 0.00407 0.00258 0.00796 +20 0.16658 0.02744 0.61619 0.01540 0.02332 0.01388 0.01926 0.01879 0.01224 0.02055 0.01034 0.01215 0.00741 0.00569 0.00534 0.00190 0.00809 0.00422 0.00276 0.00844 +21 0.02417 0.01022 0.01334 0.01041 0.01471 0.00913 0.00853 0.08055 0.01774 0.60573 0.05239 0.02435 0.08388 0.00832 0.00618 0.00187 0.00496 0.00679 0.00713 0.00960 +22 0.01677 0.01205 0.08140 0.01031 0.01522 0.00893 0.00905 0.02045 0.05274 0.25615 0.06649 0.04544 0.01557 0.00678 0.00547 0.00148 0.00495 0.00560 0.00513 0.36003 +23 0.16683 0.01180 0.01496 0.01290 0.01423 0.01516 0.01064 0.01467 0.00977 0.01725 0.00928 0.01378 0.00863 0.01340 0.10939 0.00321 0.46410 0.00488 0.00300 0.08213 + +[dist] +# distance from previous block +# +7 16 + +[block] +# block no. 22 follows, 38 sequences, length 6 +# corresponding to MSA columns: +# 1247-1252 +name=unknown_W +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.00733 0.00524 0.00698 0.00838 0.00873 0.00489 0.00558 0.00838 0.01152 0.01536 0.03316 0.78466 0.03979 0.01885 0.00768 0.00244 0.00349 0.01710 0.00558 0.00489 +1 0.01041 0.00709 0.00808 0.00738 0.00993 0.00599 0.00575 0.01235 0.01441 0.11123 0.12398 0.04824 0.47386 0.01304 0.00680 0.00193 0.00356 0.05072 0.00575 0.07949 +2 0.01430 0.02608 0.54722 0.01765 0.02555 0.01352 0.13402 0.02039 0.01351 0.11246 0.01266 0.01425 0.00878 0.00583 0.00598 0.00192 0.00861 0.00507 0.00324 0.00894 +3 0.26692 0.01203 0.01543 0.01222 0.01656 0.01225 0.10707 0.07068 0.07963 0.29248 0.01726 0.01826 0.01233 0.00696 0.00558 0.00193 0.00575 0.03264 0.00543 0.00857 +4 0.19703 0.02395 0.01536 0.01387 0.01690 0.55243 0.01062 0.02202 0.01505 0.01736 0.00901 0.01077 0.00749 0.00635 0.00600 0.00169 0.06019 0.00383 0.00320 0.00685 +5 0.01450 0.01539 0.01823 0.01575 0.01620 0.12585 0.01294 0.01585 0.01034 0.01451 0.00810 0.01283 0.00788 0.00991 0.01768 0.00248 0.66716 0.00506 0.00270 0.00664 + +[dist] +# distance from previous block +# +0 1 + +[block] +# block no. 23 follows, 38 sequences, length 6 +# corresponding to MSA columns: +# 1254-1259 +name=unknown_X +# +# +# G D E R K N Q S T A V L I F Y W H M C P +0 0.01343 0.01028 0.01283 0.00977 0.01415 0.00866 0.03490 0.04640 0.05049 0.08028 0.16725 0.02064 0.01996 0.00666 0.00539 0.00132 0.00449 0.00567 0.00472 0.48271 +1 0.04265 0.10015 0.01305 0.00922 0.01226 0.00970 0.00754 0.01866 0.03805 0.26240 0.27072 0.05409 0.09335 0.00992 0.00664 0.00187 0.02797 0.00820 0.00606 0.00751 +2 0.00774 0.00584 0.00715 0.00741 0.00866 0.00525 0.00533 0.00963 0.01433 0.01908 0.32409 0.28450 0.24864 0.01522 0.00729 0.00211 0.00311 0.01338 0.00600 0.00525 +3 0.01099 0.00669 0.00941 0.09845 0.01363 0.00652 0.00742 0.01259 0.01250 0.13528 0.02900 0.57076 0.03203 0.01550 0.00722 0.00230 0.00428 0.01393 0.00554 0.00596 +4 0.69880 0.01184 0.00961 0.00861 0.01228 0.01373 0.00700 0.02000 0.12855 0.02669 0.01099 0.01183 0.00844 0.00600 0.00411 0.00189 0.00467 0.00383 0.00411 0.00700 +5 0.01499 0.01161 0.03484 0.10038 0.03814 0.03077 0.00958 0.01979 0.11229 0.14220 0.06861 0.04057 0.01539 0.00673 0.00552 0.00153 0.00526 0.00563 0.00467 0.33149 + +[dist] +# distance from previous block +# +12 79 + +# created by: +# /software/SequenceAnalysis/GenePrediction/augustus/3.0.1/scripts/msa2prfl.pl ./aligns/BUSCOaEOG7B0HST.fas diff -r 000000000000 -r 5e3543b1ef9f test-data/arthropoda/scores_cutoff --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arthropoda/scores_cutoff Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,1 @@ +BUSCOaEOG7B0HST 996.48 diff -r 000000000000 -r 5e3543b1ef9f test-data/busco.loc --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/busco.loc Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,1 @@ +arthropoda_2.0 arthropoda_2.0 Arthropoda (v2) ${__HERE__}/arthropoda/ diff -r 000000000000 -r 5e3543b1ef9f test-data/genome.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome.fa Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,14 @@ +>sample +TGCATCGGTTATTTGCATTGGCTGGCATTTAATTTATGCACAAACACACACGCTGGAACACATTAGTCATACGCAACGTTGCACAAATATTTATTAGCTATTGCAAGTCAGTGCGGGGCAAATAGCACCGTGAAATGCAAACGAAAGCATTGAGTGTGCTGGCATCATCGATTTAGCAGCCATAAATACTGCTCAACACTAAATCAATCATACGCAATGTGGTGCTAATTGATTGAGCAAACATTGCCAAGATGCAATTGCCATGATCAAGG +GGCGAAGGTTTCTTTGGGCCAAACAGAAGAGTGGTTTCGCCACTTAACTAGAGGTTAATTATTAGATTGTATTAGCCAGCTAGCTGCGTACGAGCATATTGAGCTACTAATGATACCACAAGTTCGCAGTTATCGCCCCAGTGGAACCCTTGAGCTTAATCCCAGTGCCCCATTAAATACTTAAGCGCGGACCCTCCAGCGCTACTCCACTCGAGCGGTTCAACGAACTGGCCAGCACTCGAAACTAAAGCCCTACCATGATTCAATATCAA +GTTGGCAACTCGAAACCCACTTGGCATTAAGTATGACTGACCTGCAGGCGACTCAACCTCAACCTGAAGCTCAACCTGAAGCTCAACCGGCGCATTCAGCTCCAGCGTTTTGCATTTAGCATTCAGCCGTGTCCAATGCTAAGATCAATGCCACTCCACGCTGGCTGTGCCAACTTCCTGTTGCAGCAACCACTACTACCCTATATGGACACAATGTGCCACGCCACGAGTATAGTGTATCGTACCTACACGAGTATCTGGCCAGTCCGCAG +TCCTAGTTCTTCCCTGCTCCTTTTTATTTAAACACTTCCTCATTTCGCTTTGTGCCCTGGCATTTGGCAGCTATTCTGTGTCAATTCCCGGTGAGTGTCATTCGAACTGGTGAACCGGAGAATGGAGCAGTCGCCAGCCGAGGATTCAGAGCCAGAACCCCAAACCCAGAACCCAGAAGGCCAGGTGAATGGGATCGGGATTCACCCAGTCCTCGCTCGCCTGGCTGAGTGCCAAGTGTAGTGCAATAAACTTGCCGTCCTGAATGGCTGGC +AATCAAAGATCTGAATGCAAGATACGATGACATTTACTCGCACATTCAATTGCGCTTTTGATTTGAATATTTACATGCTTTCTGGTCGTAGTCCCAGTTCCGCAGACTCGAGTCCCTCGGGCTGCCATTCTTTCATGTCCTTTCGTTCTATTGACATAGTCAAATTGGCTTTGCTGCACAGCGAGAAAATGTACTTAACTTCCACACAATCCTGGCTATTTGCTGCTATGACTGTAAGCATAATTTATTTTAGGGTAAATGGGTGAGTGACC +AAAAGGCATGCCGTGCAGTTCATTTTATCAAAGCACCATGACTAACTGGTACAACCATTTTTTCTGCGTGCCTTTCGGGTCAACCGAATCAGGCCCTAATTGATTTTCAAATGTTTCCACAGCGTCTTAAAGTCCAGTCCTTATTTAAACAACTTACTAAGTATTGCAGAGCCTTGGCATACTTAGCTGCAGTTATGCATTTCAAGCATAAACAACTAATTTGACTAATTGATAAGCCATGCAAAGGCAAAGGCATCTCGAGATGTCTTGAG +TCGACTTCACTGCACTTCTGGCCGGCTTGTCTCGGCCTGGTTGGTTGCGTTTCTGTATCTTTGGCTCCGGCTGTTTGCTTTGTCCATCAACATCTTTTGAGCGGAGGCACTCAGGCGCAAACTGTTGCACTTCAGACCAGTCTGGAGAGCAGTGTTCACTAGGATACGAGTATATACATAGGCTCATGTGGAGCCGGGATCAAGCCACCCCAAACCCCAAACCCCATTAATTGCAATCAATTTCGCTGTCAACACACACTCCAAATAACTGC +GGGATATTTATTTATGGGCTGCGCTTCCCTTCAGCAACCTTTTGCAACTGAATAATTGCCTTATGACACATTATCATTATTATTAAGGCTGCCACGGGTCGGCAAAGTAATCATTACCTCCTGCCCATATCATCCTGCCCCTGGGCCATGAACCTGGGAATTAGGGAGTCAGCATTGCAGTGCCCACAGCTCCTCTATGCTCATAAATATATTTCCAGCTGGCAACATTATATAATTATTTTGCCATGGATTGCATTGAACTTAGTCCGAGT +GCGTCGATGTTGCTCGTTTGCTGTTTGCTGTTTGCTATTTCTGTTTGCACTTCTTGCCGCAGGCGCGCAACTCTTCATGTGGCTTCTTCTCGTTTTTAGGCCAGAATCCAGAAGGCAGCGTTCAGAACCCAGAATCCAGAATCCATGTGATGCCTTTGCGTGAATTTCATTTTAAAGTGCAAATATTTGCGGCCTGGCCCGGCCAGTTGCTTAAATGGAAAACTGGGCGAGAAAAAAGAATGCACTGGTAGCTCACAAACAGCCCACACAGA +AACCAGTAATGAAATTGTGCGGCACTCGTCATTGCGGCACTGGCCTTACATATAAATTATATAAAATATATACACATTTGTTTGGCATTGACCGGCCTACAAAGGAACTGCAGCCAGGGATGCAGCATGGGTATGATTTCCCTATAGTCGTGGCAAATACCTTTAACACGAGTAAGTACAAGTAATGCCCAACTGAGGGCCTTCAAGTAATATTAAGAGAAGATATTTTTAAACATCTATCTTTTTTAAGGACACACATTCTAACTTTATTT +ACGAGAGACACTGGCACCCTCATACAAAATTCTAGAAAGCTAGTCAGTAAACTAGAACTGCAGTTCTCCCCTGCTTATGACAATAACAGCAATTTGTATTTAAATTTAGGAATGACCAGGGCTCTTCCGCTCCACCCTGGCCAGTATAATTTGTGCATCTCTAGCCAATACAAACTTATTATATACTTGCAAAAGTTGTGCACTGTAAATATTTGCGGCGACCACCCGCACTTTCGCCATGACTACAAAATGGGTGGCATGAAATGGGGGCT +TTTGGGGGGCAACCGCAGAGAATGCTTGACTTTGGCCGGTAAAAAACTACGCAGACCACCCACCACCCAACCCGGTTTTTCTCTCTTGGCCACGTTTATTGATGGCGGCGGGAAGTGCTTTAATGGAAATTTAAGTATCATCGTTTAAAATGAAGCAGAAAAGCGCAAGCGAACGAAAGACCCTGGAAAATTGCGAGTTGCGACTGGTATTGCGACCCTTGAGCTTTGGTCATTGCGTTGGCAACGCAAATTATTATTTTTATTATTATTGC +AGGTTTTCGGTGCACATTTATTTCATGCAACTTTACAGCGCTGCACATAGAAATTATGTACAGGCCGCGTGGGCCATAATGCAGATTGCCAACCCGAGAAGGGTAACTCGGAGTGAAATGGCGGGAATTAGGCAAGCAAACAGGCAACTAAAATATGCAACGCAGGCAGTGGGGAAATTTGATGGGCGCCAGAAAAGGCCGTGAAAAGGCCGTAAAACTGGGCCAAGTAATGAGCTACGGCGGCCACACATTAAATATGCAACAATTAAAAG diff -r 000000000000 -r 5e3543b1ef9f test-data/genome_results/full_table --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results/full_table Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpeQaU9k/job_working_directory/000/2/conda-env/bin/BUSCO.py -i /tmp/tmpeQaU9k/files/000/dataset_1.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m genome -c 1 -sp generic -e 0.01 -z +# +# Busco id Status Contig Start End Score Length +BUSCOaEOG7B0HST Missing diff -r 000000000000 -r 5e3543b1ef9f test-data/genome_results/missing_buscos_list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results/missing_buscos_list Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,5 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpeQaU9k/job_working_directory/000/2/conda-env/bin/BUSCO.py -i /tmp/tmpeQaU9k/files/000/dataset_1.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m genome -c 1 -sp generic -e 0.01 -z +# +BUSCOaEOG7B0HST diff -r 000000000000 -r 5e3543b1ef9f test-data/genome_results/short_summary --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genome_results/short_summary Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,15 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpeQaU9k/job_working_directory/000/2/conda-env/bin/BUSCO.py -i /tmp/tmpeQaU9k/files/000/dataset_1.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m genome -c 1 -sp generic -e 0.01 -z +# +# Summarized benchmarking in BUSCO notation for file /tmp/tmpeQaU9k/files/000/dataset_1.dat +# BUSCO was run in mode: genome + + C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1 + + 0 Complete BUSCOs (C) + 0 Complete and single-copy BUSCOs (S) + 0 Complete and duplicated BUSCOs (D) + 0 Fragmented BUSCOs (F) + 1 Missing BUSCOs (M) + 1 Total BUSCO groups searched diff -r 000000000000 -r 5e3543b1ef9f test-data/proteome.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/proteome.fa Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,16 @@ +>BUSCOaEOG7B0HST +MAADQAQFQQLLVSLLSTDNEVRKQAEEAYNNLPVESKVTFLLGAIANGQLSEEVRQLAA +VLLRRLFSSEFLEFYKKLPAEAQAQLKEQILLAVQQEVSEQLRRKVCEVVAEVARNLIDE +DGNNQWPEFLQFLFQCANSPSPQLKESALRIFTSVPGIFGNQEAQYLDLIKQMLAKSLED +TEDAEVRLQAVRAVGAFILLHDKEKEIQKHFADLLPALLQVVAESIEKQDDDALLKVLID +LAEATPKFLRPQLETILELCLKVLSEEDVEDSWRHLALEVLVTLAETAPAMVRKRAEKYI +VALVPLVLKMMTDLEEDEDWSVADEITEDDNDSNNVVAESALDRLACGLGGKVVLPLVVE +AIPAMLSSSDWKKRHAALMAISAIGEGCHKQMEALLDQVLDGVLKYLQDPHPRVRYAACN +AIGQMSTDFAPIFEKKFHDKVIPGLLLLLDDEANPRVQAHAGAALVNFSEDCPKNILTRY +LDAIMAKLEAILTSKFKELVEKGTKLVLEQVVTTIASVADTAEEEFVAYYDRLMPCLKYI +IQNANSEELKLLRGKTIECVSLIGLAVGREKFIADASEVMDLLLKTHTEGAELPDDDPQT +SYLISAWARICKILGKQFEQYLPLVMGPVLRTASLKPEVALLDNEDLEDIEGDVDWQFVS +LGEQQNFGIRTAGLEDKASACEMLVCYARELKEGFAEYAEEVVRLMVPLLKFYFHDGVRT +AAAESLPYLLDCAKIKGPQYLEGMWAYICPELLKAIDTEPEKEVLSELLSSLAKCIETLG +AGCLSEEALKELLRILDKLLKEHFERAEKRLEKRKDEDYDEVVEEELAEEDDEDVYILSK +VADILHALFATYKEAFLPAFDQVVPHFVKLLEPERPLADRQWALCVFDDVIEFGGPACVK diff -r 000000000000 -r 5e3543b1ef9f test-data/proteome_results/full_table --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/proteome_results/full_table Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/4/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_5.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m proteins -c 1 -sp generic -e 0.01 -z +# +# Busco id Status Sequence Score Length +BUSCOaEOG7B0HST Fragmented BUSCOaEOG7B0HST 1877.5 899 diff -r 000000000000 -r 5e3543b1ef9f test-data/proteome_results/missing_buscos_list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/proteome_results/missing_buscos_list Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,4 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/4/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_5.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m proteins -c 1 -sp generic -e 0.01 -z +# diff -r 000000000000 -r 5e3543b1ef9f test-data/proteome_results/short_summary --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/proteome_results/short_summary Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,15 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/4/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_5.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m proteins -c 1 -sp generic -e 0.01 -z +# +# Summarized benchmarking in BUSCO notation for file /tmp/tmpCgx5rU/files/000/dataset_5.dat +# BUSCO was run in mode: proteins + + C:0.0%[S:0.0%,D:0.0%],F:100.0%,M:0.0%,n:1 + + 0 Complete BUSCOs (C) + 0 Complete and single-copy BUSCOs (S) + 0 Complete and duplicated BUSCOs (D) + 1 Fragmented BUSCOs (F) + 0 Missing BUSCOs (M) + 1 Total BUSCO groups searched diff -r 000000000000 -r 5e3543b1ef9f test-data/transcriptome.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transcriptome.fa Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,46 @@ +>BUSCOaEOG7B0HST +atggcggcggatcaggcgcagtttcagcagctgctggtgagcctgctgagcaccgataac +gaagtgcgcaaacaggcggaagaagcgtataacaacctgccggtggaaagcaaagtgacc +tttctgctgggcgcgattgcgaacggccagctgagcgaagaagtgcgccagctggcggcg +gtgctgctgcgccgcctgtttagcagcgaatttctggaattttataaaaaactgccggcg +gaagcgcaggcgcagctgaaagaacagattctgctggcggtgcagcaggaagtgagcgaa +cagctgcgccgcaaagtgtgcgaagtggtggcggaagtggcgcgcaacctgattgatgaa +gatggcaacaaccagtggccggaatttctgcagtttctgtttcagtgcgcgaacagcccg +agcccgcagctgaaagaaagcgcgctgcgcatttttaccagcgtgccgggcatttttggc +aaccaggaagcgcagtatctggatctgattaaacagatgctggcgaaaagcctggaagat +accgaagatgcggaagtgcgcctgcaggcggtgcgcgcggtgggcgcgtttattctgctg +catgataaagaaaaagaaattcagaaacattttgcggatctgctgccggcgctgctgcag +gtggtggcggaaagcattgaaaaacaggatgatgatgcgctgctgaaagtgctgattgat +ctggcggaagcgaccccgaaatttctgcgcccgcagctggaaaccattctggaactgtgc +ctgaaagtgctgagcgaagaagatgtggaagatagctggcgccatctggcgctggaagtg +ctggtgaccctggcggaaaccgcgccggcgatggtgcgcaaacgcgcggaaaaatatatt +gtggcgctggtgccgctggtgctgaaaatgatgaccgatctggaagaagatgaagattgg +agcgtggcggatgaaattaccgaagatgataacgatagcaacaacgtggtggcggaaagc +gcgctggatcgcctggcgtgcggcctgggcggcaaagtggtgctgccgctggtggtggaa +gcgattccggcgatgctgagcagcagcgattggaaaaaacgccatgcggcgctgatggcg +attagcgcgattggcgaaggctgccataaacagatggaagcgctgctggatcaggtgctg +gatggcgtgctgaaatatctgcaggatccgcatccgcgcgtgcgctatgcggcgtgcaac +gcgattggccagatgagcaccgattttgcgccgatttttgaaaaaaaatttcatgataaa +gtgattccgggcctgctgctgctgctggatgatgaagcgaacccgcgcgtgcaggcgcat +gcgggcgcggcgctggtgaactttagcgaagattgcccgaaaaacattctgacccgctat +ctggatgcgattatggcgaaactggaagcgattctgaccagcaaatttaaagaactggtg +gaaaaaggcaccaaactggtgctggaacaggtggtgaccaccattgcgagcgtggcggat +accgcggaagaagaatttgtggcgtattatgatcgcctgatgccgtgcctgaaatatatt +attcagaacgcgaacagcgaagaactgaaactgctgcgcggcaaaaccattgaatgcgtg +agcctgattggcctggcggtgggccgcgaaaaatttattgcggatgcgagcgaagtgatg +gatctgctgctgaaaacccataccgaaggcgcggaactgccggatgatgatccgcagacc +agctatctgattagcgcgtgggcgcgcatttgcaaaattctgggcaaacagtttgaacag +tatctgccgctggtgatgggcccggtgctgcgcaccgcgagcctgaaaccggaagtggcg +ctgctggataacgaagatctggaagatattgaaggcgatgtggattggcagtttgtgagc +ctgggcgaacagcagaactttggcattcgcaccgcgggcctggaagataaagcgagcgcg +tgcgaaatgctggtgtgctatgcgcgcgaactgaaagaaggctttgcggaatatgcggaa +gaagtggtgcgcctgatggtgccgctgctgaaattttattttcatgatggcgtgcgcacc +gcggcggcggaaagcctgccgtatctgctggattgcgcgaaaattaaaggcccgcagtat +ctggaaggcatgtgggcgtatatttgcccggaactgctgaaagcgattgataccgaaccg +gaaaaagaagtgctgagcgaactgctgagcagcctggcgaaatgcattgaaaccctgggc +gcgggctgcctgagcgaagaagcgctgaaagaactgctgcgcattctggataaactgctg +aaagaacattttgaacgcgcggaaaaacgcctggaaaaacgcaaagatgaagattatgat +gaagtggtggaagaagaactggcggaagaagatgatgaagatgtgtatattctgagcaaa +gtggcggatattctgcatgcgctgtttgcgacctataaagaagcgtttctgccggcgttt +gatcaggtggtgccgcattttgtgaaactgctggaaccggaacgcccgctggcggatcgc +cagtgggcgctgtgcgtgtttgatgatgtgattgaatttggcggcccggcgtgcgtgaaa diff -r 000000000000 -r 5e3543b1ef9f test-data/transcriptome_results/full_table --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transcriptome_results/full_table Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/6/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_9.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m tran -c 1 -sp generic -e 0.01 -z +# +# Busco id Status Sequence Score Length +BUSCOaEOG7B0HST Missing diff -r 000000000000 -r 5e3543b1ef9f test-data/transcriptome_results/missing_buscos_list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transcriptome_results/missing_buscos_list Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,5 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/6/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_9.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m tran -c 1 -sp generic -e 0.01 -z +# +BUSCOaEOG7B0HST diff -r 000000000000 -r 5e3543b1ef9f test-data/transcriptome_results/short_summary --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/transcriptome_results/short_summary Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,15 @@ +# BUSCO version is: 2.0 +# The lineage dataset is: arthropoda (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) +# To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/6/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_9.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m tran -c 1 -sp generic -e 0.01 -z +# +# Summarized benchmarking in BUSCO notation for file /tmp/tmpCgx5rU/files/000/dataset_9.dat +# BUSCO was run in mode: tran + + C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1 + + 0 Complete BUSCOs (C) + 0 Complete and single-copy BUSCOs (S) + 0 Complete and duplicated BUSCOs (D) + 0 Fragmented BUSCOs (F) + 1 Missing BUSCOs (M) + 1 Total BUSCO groups searched diff -r 000000000000 -r 5e3543b1ef9f tool-data/busco.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/busco.loc.sample Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,13 @@ +# This is a sample file distributed with Galaxy that is used to define a +# list of busco datasets, using four columns tab separated: +# +# +# +# Datasets can be retrieved from http://busco.ezlab.org/frame_wget.html +# +# "/some/path/arthropoda/" would be the last column in the line +# If this were for the mm10 mouse genome, the resulting entry would look like: +# +#arthropoda_2.0 arthropoda_2.0 Arthropoda (v2) /some/path/arthropoda/ +# +# diff -r 000000000000 -r 5e3543b1ef9f tool_data_table_conf.xml.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ + + + value, dbkey, name, path + +
+ diff -r 000000000000 -r 5e3543b1ef9f tool_data_table_conf.xml.test --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Thu Jan 12 15:12:47 2017 -0500 @@ -0,0 +1,6 @@ + + + value, dbkey, name, path + +
+