# HG changeset patch
# User iuc
# Date 1637789385 0
# Node ID b4a22d90cce942159a0c98c3c27f0b9579201889
# Parent  88bcfaea2fb600041a49c7f9b29151b26da566e5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit 563c0931e9fc14b0d6e8a7d64ad042a483ec9bb4"

diff -r 88bcfaea2fb6 -r b4a22d90cce9 bwa-mem2.xml
--- a/bwa-mem2.xml	Sat Oct 16 08:33:03 2021 +0000
+++ b/bwa-mem2.xml	Wed Nov 24 21:29:45 2021 +0000
@@ -5,8 +5,8 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="xrefs"/>
     <expand macro="stdio"/>
-    <expand macro="xrefs"/>
     <command><![CDATA[
 @pipefail@
 @set_reference_fasta_filename@
@@ -306,7 +306,6 @@
         <test>
             <param name="reference_source_selector" value="history" />
             <param name="ref_file" ftype="fasta" value="bwa-mem-mt-genome.fa"/>
-            <param name="index_a" value="is"/>
             <param name="fastq_input_selector" value="paired"/>
             <param name="fastq_input1" ftype="fastqsanger" value="bwa-mem-fastq1.fq"/>
             <param name="fastq_input2" ftype="fastqsanger" value="bwa-mem-fastq2.fq"/>