# HG changeset patch
# User iuc
# Date 1743663049 0
# Node ID bec6ba059ded6de74fd7cc50f340841e2a29a454
# Parent  d459a463cb73fce21398bfced4f26ab2452688f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit f7942fbad20a3378a95cb84e90ed14c31c192a4f

diff -r d459a463cb73 -r bec6ba059ded bwa-mem2.xml
--- a/bwa-mem2.xml	Fri Mar 28 15:51:05 2025 +0000
+++ b/bwa-mem2.xml	Thu Apr 03 06:50:49 2025 +0000
@@ -116,9 +116,9 @@
 #end if
 
 #if str( $output_sort ) == "coordinate":
-        | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output'
+        | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output'
 #elif str( $output_sort ) == "name":
-        | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output'
+        | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output'
 #else
         | samtools view -@ \${GALAXY_SLOTS:-2} -bS - -o '$bam_output'
 #end if
diff -r d459a463cb73 -r bec6ba059ded macros.xml
--- a/macros.xml	Fri Mar 28 15:51:05 2025 +0000
+++ b/macros.xml	Thu Apr 03 06:50:49 2025 +0000
@@ -2,7 +2,7 @@
     <import>read_group_macros.xml</import>
 
     <token name="@TOOL_VERSION@">2.2.1</token>
-    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@VERSION_SUFFIX@">4</token>
     <token name="@PROFILE_VERSION@">20.01</token>
 
     <xml name="xrefs">