Mercurial > repos > iuc > bwa_mem2
changeset 7:bec6ba059ded draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit f7942fbad20a3378a95cb84e90ed14c31c192a4f
| author | iuc |
|---|---|
| date | Thu, 03 Apr 2025 06:50:49 +0000 |
| parents | d459a463cb73 |
| children | |
| files | bwa-mem2.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/bwa-mem2.xml Fri Mar 28 15:51:05 2025 +0000 +++ b/bwa-mem2.xml Thu Apr 03 06:50:49 2025 +0000 @@ -116,9 +116,9 @@ #end if #if str( $output_sort ) == "coordinate": - | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' + | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' #elif str( $output_sort ) == "name": - | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' + | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' #else | samtools view -@ \${GALAXY_SLOTS:-2} -bS - -o '$bam_output' #end if
--- a/macros.xml Fri Mar 28 15:51:05 2025 +0000 +++ b/macros.xml Thu Apr 03 06:50:49 2025 +0000 @@ -2,7 +2,7 @@ <import>read_group_macros.xml</import> <token name="@TOOL_VERSION@">2.2.1</token> - <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX@">4</token> <token name="@PROFILE_VERSION@">20.01</token> <xml name="xrefs">