# HG changeset patch
# User iuc
# Date 1473886547 14400
# Node ID f7094efef9032c6e6344665f8917118e9240d61d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
diff -r 000000000000 -r f7094efef903 bwameth.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/bwameth.xml Wed Sep 14 16:55:47 2016 -0400
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+ Fast and accurate aligner of BS-Seq reads.
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+ samtools
+ bwameth
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+ bwameth.py --version
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+ @misc{1401.1129,
+ Author = {Brent S. Pedersen and Kenneth Eyring and Subhajyoti De and Ivana V. Yang and David A. Schwartz},
+ Title = {Fast and accurate alignment of long bisulfite-seq reads},
+ Year = {2014},
+ Eprint = {arXiv:1401.1129},
+ }
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diff -r 000000000000 -r f7094efef903 test-data/t_R1.fastq.gz
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diff -r 000000000000 -r f7094efef903 test-data/t_R2.fastq.gz
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diff -r 000000000000 -r f7094efef903 tool-data/bwameth_indexes.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/bwameth_indexes.loc.sample Wed Sep 14 16:55:47 2016 -0400
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+# This is a sample file distributed with Galaxy that is used to define a
+# list of bwa-meth indices, using three columns tab separated:
+#
+# bwameth_index_id\tSome description text\t/path/to/genome.fasta
+#
+# An index can be created with the following command:
+#
+# bwameth.py index /some/path/genome.fa
+#
+# "/some/path/genome.fa" would then be the last column in the line
diff -r 000000000000 -r f7094efef903 tool_data_table_conf.xml.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample Wed Sep 14 16:55:47 2016 -0400
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diff -r 000000000000 -r f7094efef903 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Wed Sep 14 16:55:47 2016 -0400
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