Mercurial > repos > iuc > cat_contigs

changeset 1:c6c77d840993 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit b6c674376eade4fdf9ffb31380f6689ede84a091"
author iuc
date Wed, 08 Jan 2020 13:03:33 -0500
parents 11a61934bfb3
children 7aebc0137f20
files cat_contigs.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cat_contigs.xml	Tue Dec 10 16:05:34 2019 -0500
+++ b/cat_contigs.xml	Wed Jan 08 13:03:33 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="cat_contigs" name="CAT contigs" version="@VERSION@.0">
+<tool id="cat_contigs" name="CAT contigs" version="@VERSION@.1">
     <description>annotate with taxonomic classification</description>
     <macros>
         <import>macros.xml</import>
@@ -20,7 +20,7 @@
         <param name="contigs_fasta" type="data" format="fasta" label="Contigs fasta"/>
         <expand macro="cat_db" />
         <expand macro="use_intermediates" />
-        <expand macro="custom_settings" />
+        <expand macro="custom_settings_contigs" />
         <expand macro="diamond_options" />
         <expand macro="add_names" />
         <expand macro="summarise" />
--- a/macros.xml	Tue Dec 10 16:05:34 2019 -0500
+++ b/macros.xml	Wed Jan 08 13:03:33 2020 -0500
@@ -77,7 +77,11 @@
       #end if
       --out_prefix 'cat_output'
 ]]></token>
-    <xml name="custom_settings">
+    <xml name="custom_settings_bins">
+        <param argument="--range" type="integer" value="5" min="0" max="49" label="range"/>
+        <param argument="--fraction" type="float" value="0.3" min="0" max="0.99" label="fraction"/>
+    </xml>
+    <xml name="custom_settings_contigs">
         <param argument="--range" type="integer" value="10" min="0" max="49" label="range"/>
         <param argument="--fraction" type="float" value="0.5" min="0" max="0.99" label="fraction"/>
     </xml>