Mercurial > repos > iuc > cat_contigs

changeset 3:f41dbb0b9ff8 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 47be73f0ca2b3a3bcb79a1fa7cf15a63c7facd19
author iuc
date Fri, 16 Feb 2024 10:45:07 +0000
parents 7aebc0137f20
children
files cat_contigs.xml macros.xml
diffstat 2 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/cat_contigs.xml	Thu Mar 09 21:01:02 2023 +0000
+++ b/cat_contigs.xml	Fri Feb 16 10:45:07 2024 +0000
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="exit_code"><![CDATA[
@@ -30,7 +31,7 @@
         <expand macro="outputs" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="contigs_fasta" ftype="fasta" value="contigs.fasta"/>
             <expand macro="test_catdb"/>
             <param name="select_outputs" value="contig2classification"/>
@@ -40,7 +41,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="4">
             <param name="contigs_fasta" ftype="fasta" value="contigs.fasta"/>
             <expand macro="test_catdb"/>
             <param name="select_outputs" value="predicted_proteins_faa"/>
--- a/macros.xml	Thu Mar 09 21:01:02 2023 +0000
+++ b/macros.xml	Fri Feb 16 10:45:07 2024 +0000
@@ -1,6 +1,11 @@
 <macros>
     <token name="@TOOL_VERSION@">5.2.3</token>
     <token name="@VERSION_SUFFIX@">0</token>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">cat_bins</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">cat</requirement>