Mercurial > repos > iuc > cat_summarise
comparison test-data/cached_locally/CAT_prepare_test/taxonomy/names.dmp @ 0:db1360aae489 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 863ad85836c80811d1d6b82eaf3ce903b273368a"
| author | iuc |
|---|---|
| date | Tue, 10 Dec 2019 16:04:54 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:db1360aae489 |
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| 1 1 | all | | synonym | | |
| 2 1 | root | | scientific name | | |
| 3 2 | Bacteria | Bacteria <prokaryotes> | scientific name | | |
| 4 2 | Monera | Monera <Bacteria> | in-part | | |
| 5 2 | Procaryotae | Procaryotae <Bacteria> | in-part | | |
| 6 2 | Prokaryota | Prokaryota <Bacteria> | in-part | | |
| 7 2 | Prokaryotae | Prokaryotae <Bacteria> | in-part | | |
| 8 2 | bacteria | bacteria <blast2> | blast name | | |
| 9 2 | eubacteria | | genbank common name | | |
| 10 2 | prokaryote | prokaryote <Bacteria> | in-part | | |
| 11 2 | prokaryotes | prokaryotes <Bacteria> | in-part | | |
| 12 641 | Vibrionaceae | | scientific name | | |
| 13 641 | Vibrionaceae Veron 1965 | | authority | | |
| 14 641 | gamma-3 proteobacteria | gamma-3 proteobacteria <#3> | in-part | | |
| 15 662 | "Microspira" Schroeter 1886 | | authority | | |
| 16 662 | "Pacinia" Trevisan 1885 | | authority | | |
| 17 662 | Beneckea | | synonym | | |
| 18 662 | Beneckea Campbell 1957 | | authority | | |
| 19 662 | Listonella | | synonym | | |
| 20 662 | Listonella MacDonell and Colwell 1986 | | authority | | |
| 21 662 | Microspira | | synonym | | |
| 22 662 | Pacinia | | synonym | | |
| 23 662 | Vibrio | | scientific name | | |
| 24 662 | Vibrio Pacini 1854 | | authority | | |
| 25 666 | "Bacillo virgola del Koch" Trevisan 1884 | | authority | | |
| 26 666 | "Bacillus cholerae" (Pacini 1854) Trevisan 1884 | | authority | | |
| 27 666 | "Bacillus cholerae-asiaticae" Trevisan 1884 | | authority | | |
| 28 666 | "Kommabacillus" Koch 1884 | | authority | | |
| 29 666 | "Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909 | | authority | | |
| 30 666 | "Microspira comma" Schroeter 1886 | | authority | | |
| 31 666 | "Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885 | | authority | | |
| 32 666 | "Spirillum cholerae" (Pacini 1854) Mac1889 | | authority | | |
| 33 666 | "Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885 | | authority | | |
| 34 666 | "Vibrio cholera" (sic) Pacini 1854 | | authority | | |
| 35 666 | "Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896 | | authority | | |
| 36 666 | "Vibrio comma" (Schroeter 1886) Blanchard 1906 | | authority | | |
| 37 666 | ATCC 14035 | ATCC 14035 <type strain> | type material | | |
| 38 666 | ATCC 14547 [[Vibrio albensis]] | ATCC 14547 [[Vibrio albensis]] <type strain> | type material | | |
| 39 666 | Bacillo virgola del Koch | | synonym | | |
| 40 666 | Bacillus cholerae | | synonym | | |
| 41 666 | Bacillus cholerae-asiaticae | | synonym | | |
| 42 666 | CCUG 48664 [[Vibrio albensis]] | CCUG 48664 [[Vibrio albensis]] <type strain> | type material | | |
| 43 666 | CCUG 9118 A | CCUG 9118 A <type strain> | type material | | |
| 44 666 | CECT 514 | CECT 514 <type strain> | type material | | |
| 45 666 | CIP 62.13 | CIP 62.13 <type strain> | type material | | |
| 46 666 | Kommabacillus | | synonym | | |
| 47 666 | LMG 4406 [[Vibrio albensis]] | LMG 4406 [[Vibrio albensis]] <type strain> | type material | | |
| 48 666 | LMG:4406 [[Vibrio albensis]] | LMG:4406 [[Vibrio albensis]] <type strain> | type material | | |
| 49 666 | Liquidivibrio cholerae | | synonym | | |
| 50 666 | Microspira comma | | synonym | | |
| 51 666 | NCIMB 41 [[Vibrio albensis]] | NCIMB 41 [[Vibrio albensis]] <type strain> | type material | | |
| 52 666 | NCTC 8021 | NCTC 8021 <type strain> | type material | | |
| 53 666 | Pacinia cholerae-asiaticae | | synonym | | |
| 54 666 | Spirillum cholerae | | synonym | | |
| 55 666 | Spirillum cholerae-asiaticae | | synonym | | |
| 56 666 | Vibrio albensis | | synonym | | |
| 57 666 | Vibrio albensis Lehmann and Neumann 1896 | | authority | | |
| 58 666 | Vibrio cholera | | synonym | | |
| 59 666 | Vibrio cholerae | | scientific name | | |
| 60 666 | Vibrio cholerae Pacini 1854 | | authority | | |
| 61 666 | Vibrio cholerae biovar albensis | | synonym | | |
| 62 666 | Vibrio cholerae bv. albensis | | synonym | | |
| 63 666 | Vibrio cholerae-asiaticae | | synonym | | |
| 64 666 | Vibrio comma | | synonym | | |
| 65 1224 | Alphaproteobacteraeota | | synonym | | |
| 66 1224 | Alphaproteobacteraeota Oren et al. 2015 | | authority | | |
| 67 1224 | Alphaproteobacteriota | | synonym | | |
| 68 1224 | Proteobacteria | | scientific name | | |
| 69 1224 | Proteobacteria Garrity et al. 2005 | | authority | | |
| 70 1224 | Proteobacteria [class] Stackebrandt et al. 1988 | | authority | | |
| 71 1224 | proteobacteria | proteobacteria <blast1224> | blast name | | |
| 72 1224 | purple bacteria | | common name | | |
| 73 1224 | purple bacteria and relatives | | common name | | |
| 74 1224 | purple non-sulfur bacteria | | common name | | |
| 75 1224 | purple photosynthetic bacteria | | common name | | |
| 76 1224 | purple photosynthetic bacteria and relatives | | common name | | |
| 77 1236 | Gammaproteobacteria | | scientific name | | |
| 78 1236 | Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013 | | authority | | |
| 79 1236 | Proteobacteria gamma subdivision | | synonym | | |
| 80 1236 | Purple bacteria, gamma subdivision | | synonym | | |
| 81 1236 | g-proteobacteria | | blast name | | |
| 82 1236 | gamma proteobacteria | | synonym | | |
| 83 1236 | gamma subdivision | | synonym | | |
| 84 1236 | gamma subgroup | | synonym | | |
| 85 1239 | Bacillaeota | | synonym | | |
| 86 1239 | Bacillaeota Oren et al. 2015 | | authority | | |
| 87 1239 | Bacillota | | synonym | | |
| 88 1239 | Bacillus/Clostridium group | | synonym | | |
| 89 1239 | Clostridium group firmicutes | | synonym | | |
| 90 1239 | Firmacutes | | synonym | | |
| 91 1239 | Firmicutes | | scientific name | | |
| 92 1239 | Firmicutes corrig. Gibbons and Murray 1978 | | authority | | |
| 93 1239 | Low G+C firmicutes | | synonym | | |
| 94 1239 | clostridial firmicutes | | synonym | | |
| 95 1239 | firmicutes | firmicutes <blast1239> | blast name | | |
| 96 1239 | low G+C Gram-positive bacteria | | common name | | |
| 97 1239 | low GC Gram+ | | common name | | |
| 98 1385 | Bacillales | | scientific name | | |
| 99 1385 | Bacillales Prevot 1953 | | authority | | |
| 100 1385 | Bacillus/Staphylococcus group | | synonym | | |
| 101 1637 | "Listerella" Pirie 1927 (nom. rej. Opin. 14) | | authority | | |
| 102 1637 | Listerella | | synonym | | |
| 103 1637 | Listeria | | scientific name | | |
| 104 1637 | Listeria Pirie 1940 | | authority | | |
| 105 1639 | "Bacterium monocytogenes hominis" Nyfeldt 1932 | | authority | | |
| 106 1639 | "Bacterium monocytogenes" Murray et al. 1926 | | authority | | |
| 107 1639 | "Corynebacterium infantisepticum" Potel 1950 | | authority | | |
| 108 1639 | "Corynebacterium parvulum" Schultz et al. 1934 | | authority | | |
| 109 1639 | "Erysipelothrix monocytogenes" (Murray et al. 1926) Wilson and Miles 1946 | | authority | | |
| 110 1639 | "Listerella hepatolytica" Pirie 1927 | | authority | | |
| 111 1639 | ATCC 15313 | ATCC 15313 <type strain> | type material | | |
| 112 1639 | Bacterium monocytogenes | | synonym | | |
| 113 1639 | Bacterium monocytogenes hominis | | synonym | | |
| 114 1639 | CCUG 15526 | CCUG 15526 <type strain> | type material | | |
| 115 1639 | CIP 82.110 | CIP 82.110 <type strain> | type material | | |
| 116 1639 | Corynebacterium infantisepticum | | synonym | | |
| 117 1639 | Corynebacterium parvulum | | synonym | | |
| 118 1639 | DSM 20600 | DSM 20600 <type strain> | type material | | |
| 119 1639 | Erysipelothrix monocytogenes | | synonym | | |
| 120 1639 | Listerella hepatolytica | | synonym | | |
| 121 1639 | Listeria monocytogenes | | scientific name | | |
| 122 1639 | Listeria monocytogenes (Murray et al. 1926) Pirie 1940 | | authority | | |
| 123 1639 | Listeria sp. FDA00013359 | | includes | | |
| 124 1639 | Listeria sp. FDA00013360 | | includes | | |
| 125 1639 | Listeria sp. FDA00013361 | | includes | | |
| 126 1639 | Listeria sp. FDA00013362 | | includes | | |
| 127 1639 | Listeria sp. FDA00013363 | | includes | | |
| 128 1639 | Listeria sp. FDA00013364 | | includes | | |
| 129 1639 | Listeria sp. FDA00013365 | | includes | | |
| 130 1639 | Listeria sp. FDA00013366 | | includes | | |
| 131 1639 | Listeria sp. FDA00013367 | | includes | | |
| 132 1639 | Listeria sp. FDA00013503 | | includes | | |
| 133 1639 | Listeria sp. FDA00013504 | | includes | | |
| 134 1639 | Listeria sp. FDA00013505 | | includes | | |
| 135 1639 | Listeria sp. FDA00013506 | | includes | | |
| 136 1639 | Listeria sp. FDA00013507 | | includes | | |
| 137 1639 | Listeria sp. FDA00013508 | | includes | | |
| 138 1639 | Listeria sp. FDA00013509 | | includes | | |
| 139 1639 | Listeria sp. FDA00013510 | | includes | | |
| 140 1639 | Listeria sp. FDA00013511 | | includes | | |
| 141 1639 | Listeria sp. FDA00013512 | | includes | | |
| 142 1639 | Listeria sp. FDA00013536 | | includes | | |
| 143 1639 | Listeria sp. FDA00013537 | | includes | | |
| 144 1639 | Listeria sp. FDA00013538 | | includes | | |
| 145 1639 | Listeria sp. FDA00013539 | | includes | | |
| 146 1639 | Listeria sp. FDA00013540 | | includes | | |
| 147 1639 | Listeria sp. FDA00013541 | | includes | | |
| 148 1639 | Listeria sp. FDA00013542 | | includes | | |
| 149 1639 | Listeria sp. FDA00013543 | | includes | | |
| 150 1639 | Listeria sp. FDA00013544 | | includes | | |
| 151 1639 | Listeria sp. FDA00013545 | | includes | | |
| 152 1639 | Listeria sp. FDA00013546 | | includes | | |
| 153 1639 | Listeria sp. FDA00013547 | | includes | | |
| 154 1639 | Listeria sp. FDA00013548 | | includes | | |
| 155 1639 | Listeria sp. FDA00013549 | | includes | | |
| 156 1639 | Listeria sp. FDA00013550 | | includes | | |
| 157 1639 | Listeria sp. FDA00013551 | | includes | | |
| 158 1639 | Listeria sp. FDA00013552 | | includes | | |
| 159 1639 | Listeria sp. FDA00013553 | | includes | | |
| 160 1639 | Listeria sp. FDA00013554 | | includes | | |
| 161 1639 | Listeria sp. FDA00013555 | | includes | | |
| 162 1639 | Listeria sp. FDA00013556 | | includes | | |
| 163 1639 | Listeria sp. FDA00013557 | | includes | | |
| 164 1639 | Listeria sp. FDA00013558 | | includes | | |
| 165 1639 | Listeria sp. FDA00013559 | | includes | | |
| 166 1639 | Listeria sp. FDA00013560 | | includes | | |
| 167 1639 | Listeria sp. FDA00013561 | | includes | | |
| 168 1639 | Listeria sp. FDA00013562 | | includes | | |
| 169 1639 | Listeria sp. FDA00013563 | | includes | | |
| 170 1639 | Listeria sp. FDA00013564 | | includes | | |
| 171 1639 | Listeria sp. FDA00013565 | | includes | | |
| 172 1639 | Listeria sp. FDA00013566 | | includes | | |
| 173 1639 | Listeria sp. FDA00013567 | | includes | | |
| 174 1639 | Listeria sp. FDA00013568 | | includes | | |
| 175 1639 | Listeria sp. FDA00013570 | | includes | | |
| 176 1639 | Listeria sp. FDA00013571 | | includes | | |
| 177 1639 | Listeria sp. FDA00013572 | | includes | | |
| 178 1639 | Listeria sp. FDA00013573 | | includes | | |
| 179 1639 | Listeria sp. FDA00013574 | | includes | | |
| 180 1639 | Listeria sp. FDA00013575 | | includes | | |
| 181 1639 | Listeria sp. FDA00013576 | | includes | | |
| 182 1639 | Listeria sp. FDA00013577 | | includes | | |
| 183 1639 | Listeria sp. FDA00013578 | | includes | | |
| 184 1639 | Listeria sp. FDA00013579 | | includes | | |
| 185 1639 | Listeria sp. FDA00013607 | | includes | | |
| 186 1639 | NCTC 10357 | NCTC 10357 <type strain> | type material | | |
| 187 1639 | SLCC 53 | SLCC 53 <type strain> | type material | | |
| 188 2157 | "Archaea" Woese et al. 1990 | | authority | | |
| 189 2157 | "Archaebacteria" (sic) Woese and Fox 1977 | | authority | | |
| 190 2157 | Archaea | | scientific name | | |
| 191 2157 | Archaebacteria | | synonym | | |
| 192 2157 | Mendosicutes | | synonym | | |
| 193 2157 | Metabacteria | | synonym | | |
| 194 2157 | Monera | Monera <Archaea> | in-part | | |
| 195 2157 | Procaryotae | Procaryotae <Archaea> | in-part | | |
| 196 2157 | Prokaryota | Prokaryota <Archaea> | in-part | | |
| 197 2157 | Prokaryotae | Prokaryotae <Archaea> | in-part | | |
| 198 2157 | archaea | archaea <blast2157> | blast name | | |
| 199 2157 | prokaryote | prokaryote <Archaea> | in-part | | |
| 200 2157 | prokaryotes | prokaryotes <Archaea> | in-part | | |
| 201 2158 | Methanobacteriales | | scientific name | | |
| 202 2158 | Methanobacteriales Balch and Wolfe 1981 | | authority | | |
| 203 2159 | Methanobacteriaceae | | scientific name | | |
| 204 2159 | Methanobacteriaceae Barker 1956 | | authority | | |
| 205 2172 | Methanobrevibacter | | scientific name | | |
| 206 2172 | Methanobrevibacter Balch and Wolfe 1981 | | authority | | |
| 207 28890 | "Euryarchaeota" Woese et al. 1990 | | authority | | |
| 208 28890 | Euryarchaeota | | scientific name | | |
| 209 28890 | Euryarchaeota Garrity and Holt 2002 | | authority | | |
| 210 28890 | Methanobacteraeota | | synonym | | |
| 211 28890 | Methanobacteraeota Oren et al. 2015 | | authority | | |
| 212 28890 | Methanobacteriota | | synonym | | |
| 213 28890 | euryarchaeotes | euryarchaeotes <blast28890> | blast name | | |
| 214 83816 | ATCC 35063 | ATCC 35063 <type strain> | type material | | |
| 215 83816 | DSM 1093 | DSM 1093 <type strain> | type material | | |
| 216 83816 | JCM 13430 | JCM 13430 <type strain> | type material | | |
| 217 83816 | Methanobacterium ruminantium | | synonym | | |
| 218 83816 | Methanobacterium ruminantium Smith and Hungate 1958 (Approved Lists 1980) | | authority | | |
| 219 83816 | Methanobrevibacter ruminantium | | scientific name | | |
| 220 83816 | Methanobrevibacter ruminantium (Smith and Hungate 1958) Balch and Wolfe 1981 | | authority | | |
| 221 83816 | OCM 146 | OCM 146 <type strain> | type material | | |
| 222 83816 | strain M1 | strain M1 <type strain> <taxid 83816> | type material | | |
| 223 91061 | Bacilli | | scientific name | | |
| 224 91061 | Bacilli Ludwig et al. 2010 | | authority | | |
| 225 91061 | Bacillus/Lactobacillus/Streptococcus group | | synonym | | |
| 226 91061 | Firmibacteria | | synonym | | |
| 227 91061 | Firmibacteria Murray 1988 | | authority | | |
| 228 131567 | biota | | synonym | | |
| 229 131567 | cellular organisms | | scientific name | | |
| 230 135623 | 'Vibrionales' | | synonym | | |
| 231 135623 | Vibrionaceae group | | synonym | | |
| 232 135623 | Vibrionales | | scientific name | | |
| 233 183925 | Archaeobacteria | | synonym | | |
| 234 183925 | Archaeobacteria Murray 1988 | | authority | | |
| 235 183925 | Methanobacteria | | scientific name | | |
| 236 183925 | Methanobacteria Boone 2002 | | authority | | |
| 237 183967 | Thermoplasmata | | scientific name | | |
| 238 183967 | Thermoplasmata Reysenbach 2002 | | authority | | |
| 239 186820 | Listeriaceae | | scientific name | | |
| 240 186820 | Listeriaceae Ludwig et al. 2010 | | authority | | |
| 241 1235850 | "Methanoplasmatales" Paul et al. 2012 | | authority | | |
| 242 1235850 | Methanomassiliicoccales | | scientific name | | |
| 243 1235850 | Methanomassiliicoccales Iino et al. 2013 | | authority | | |
| 244 1235850 | Methanoplasmatales | | synonym | | |
| 245 1783272 | Terrabacteria group | | scientific name | | |
| 246 2283794 | "Methanomada" Petitjean et al. 2015 | | authority | | |
| 247 2283794 | Methanogen Class I | | synonym | | |
| 248 2283794 | Methanomada | | equivalent name | | |
| 249 2283794 | Methanomada group | | scientific name | | |
| 250 2283796 | Diaforarchaea | | equivalent name | | |
| 251 2283796 | Diaforarchaea Petijean et al. 2015 | | authority | | |
| 252 2283796 | Diaforarchaea group | | scientific name | |