# HG changeset patch
# User iuc
# Date 1759174558 0
# Node ID dd6cab3012e19877fd6b02126f1788fb81afe843
# Parent  66acaec9f3867ca20a107427cf623bbd38fb8334
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/main/tools/checkm2/ commit 1d1f552e49a0faf7eb16acd3ecdd8d05142aeaf9

diff -r 66acaec9f386 -r dd6cab3012e1 checkm2.xml
--- a/checkm2.xml	Thu Mar 20 06:47:18 2025 +0000
+++ b/checkm2.xml	Mon Sep 29 19:35:58 2025 +0000
@@ -3,7 +3,7 @@
     <macros>
         <!-- enable tests and output assertions on update -->
         <token name="@TOOL_VERSION@">1.0.2</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@VERSION_SUFFIX@">2</token>
         <token name="@IDX_DATA_TABLE@">checkm2</token>
     </macros>
     <xrefs>
@@ -16,7 +16,7 @@
     #import re
     mkdir input_dir &&
     #for $i, $file in enumerate($input):
-        #set $cleaned =  re.sub('[^\s\w\-\\.]', '_', str($file.element_identifier))
+        #set $cleaned =  re.sub('[^\w\-\\.]', '_', str($file.element_identifier))
         ln -s '$file' 'input_dir/${cleaned}.dat' &&
     #end for
     checkm2 predict