Mercurial > repos > iuc > checkm_lineage_set
diff tool-data/order.loc.sample @ 0:b39999cdbf21 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
|---|---|
| date | Fri, 29 Jul 2022 20:38:36 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/order.loc.sample Fri Jul 29 20:38:36 2022 +0000 @@ -0,0 +1,100 @@ +# File generated by format_taxon_list.py script +# taxon description +Acholeplasmatales Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets) +Acidilobales Acidilobales (3 genomes, 558 marker genes, 236 marker sets) +Acidithiobacillales Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets) +Acidobacteriales Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets) +Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) +Actinomycetales Actinomycetales (620 genomes, 256 marker genes, 152 marker sets) +Aeromonadales Aeromonadales (23 genomes, 456 marker genes, 237 marker sets) +Alteromonadales Alteromonadales (116 genomes, 519 marker genes, 267 marker sets) +Aquificales Aquificales (18 genomes, 486 marker genes, 369 marker sets) +Archaeoglobales Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets) +Bacillales Bacillales (331 genomes, 319 marker genes, 134 marker sets) +Bacteroidales Bacteroidales (210 genomes, 402 marker genes, 267 marker sets) +Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets) +Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) +Bdellovibrionales Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets) +Bifidobacteriales Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets) +Burkholderiales Burkholderiales (194 genomes, 427 marker genes, 216 marker sets) +Campylobacterales Campylobacterales (107 genomes, 458 marker genes, 273 marker sets) +Cardiobacteriales Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets) +Caulobacterales Caulobacterales (15 genomes, 644 marker genes, 366 marker sets) +Chlamydiales Chlamydiales (64 genomes, 455 marker genes, 185 marker sets) +Chlorobiales Chlorobiales (12 genomes, 612 marker genes, 333 marker sets) +Chloroflexales Chloroflexales (8 genomes, 501 marker genes, 342 marker sets) +Chromatiales Chromatiales (92 genomes, 595 marker genes, 283 marker sets) +Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets) +Clostridiales Clostridiales (395 genomes, 202 marker genes, 114 marker sets) +Coriobacteriales Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets) +Cytophagales Cytophagales (48 genomes, 438 marker genes, 328 marker sets) +Deferribacterales Deferribacterales (6 genomes, 564 marker genes, 339 marker sets) +Dehalococcoidales Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets) +Deinococcales Deinococcales (17 genomes, 563 marker genes, 388 marker sets) +Desulfobacterales Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets) +Desulfovibrionales Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets) +Desulfurellales Desulfurellales (4 genomes, 817 marker genes, 252 marker sets) +Desulfurococcales Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets) +Desulfuromonadales Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets) +Dictyoglomales Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets) +Enterobacteriales Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets) +Entomoplasmatales Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets) +Erysipelotrichales Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets) +Flavobacteriales Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets) +Fusobacteriales Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets) +Halanaerobiales Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets) +Halobacteriales Halobacteriales (59 genomes, 367 marker genes, 241 marker sets) +Holophagales Holophagales (2 genomes, 883 marker genes, 459 marker sets) +Hydrogenophilales Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets) +Ignavibacteriales Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets) +Lactobacillales Lactobacillales (490 genomes, 335 marker genes, 183 marker sets) +Legionellales Legionellales (23 genomes, 545 marker genes, 269 marker sets) +Mariprofundales Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets) +Methanobacteriales Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets) +Methanocellales Methanocellales (3 genomes, 712 marker genes, 317 marker sets) +Methanococcales Methanococcales (16 genomes, 610 marker genes, 439 marker sets) +Methanomicrobiales Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets) +Methanosarcinales Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets) +Methylococcales Methylococcales (15 genomes, 684 marker genes, 348 marker sets) +Methylophilales Methylophilales (16 genomes, 685 marker genes, 234 marker sets) +Mycoplasmatales Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets) +Myxococcales Myxococcales (8 genomes, 534 marker genes, 348 marker sets) +Nautiliales Nautiliales (4 genomes, 712 marker genes, 351 marker sets) +Neisseriales Neisseriales (69 genomes, 658 marker genes, 446 marker sets) +Nitrosomonadales Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets) +Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets) +Nitrospirales Nitrospirales (4 genomes, 676 marker genes, 379 marker sets) +Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets) +Oceanospirillales Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets) +Opitutales Opitutales (3 genomes, 859 marker genes, 521 marker sets) +Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets) +Pasteurellales Pasteurellales (83 genomes, 767 marker genes, 440 marker sets) +Planctomycetales Planctomycetales (10 genomes, 370 marker genes, 265 marker sets) +Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets) +Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets) +Pseudomonadales Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets) +Rhizobiales Rhizobiales (349 genomes, 407 marker genes, 244 marker sets) +Rhodobacterales Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets) +Rhodocyclales Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets) +Rhodospirillales Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets) +Rickettsiales Rickettsiales (81 genomes, 325 marker genes, 210 marker sets) +Rubrobacterales Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets) +Selenomonadales Selenomonadales (64 genomes, 334 marker genes, 167 marker sets) +Solirubrobacterales Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets) +Sphingobacteriales Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets) +Sphingomonadales Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets) +Spirochaetales Spirochaetales (71 genomes, 218 marker genes, 127 marker sets) +Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets) +Sulfolobales Sulfolobales (20 genomes, 499 marker genes, 141 marker sets) +Synergistales Synergistales (13 genomes, 452 marker genes, 160 marker sets) +Thermales Thermales (23 genomes, 585 marker genes, 331 marker sets) +Thermoanaerobacterales Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets) +Thermococcales Thermococcales (16 genomes, 500 marker genes, 315 marker sets) +Thermodesulfobacteriales Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets) +Thermoplasmatales Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets) +Thermoproteales Thermoproteales (13 genomes, 315 marker genes, 257 marker sets) +Thermotogales Thermotogales (14 genomes, 460 marker genes, 267 marker sets) +Thiotrichales Thiotrichales (64 genomes, 406 marker genes, 251 marker sets) +Verrucomicrobiales Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets) +Vibrionales Vibrionales (80 genomes, 922 marker genes, 367 marker sets) +Xanthomonadales Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)