# HG changeset patch
# User iuc
# Date 1659988796 0
# Node ID f0107b9f2dc3aaf7dff7f8be018d91b3a3cd014b
# Parent 760dc0c0e689972899160e7bf8b218805ffd91f0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit a96defec82bfa9628fa821ffa6df5c68314a41d8
diff -r 760dc0c0e689 -r f0107b9f2dc3 lineage_wf.xml
--- a/lineage_wf.xml Fri Jul 29 20:30:08 2022 +0000
+++ b/lineage_wf.xml Mon Aug 08 19:59:56 2022 +0000
@@ -66,65 +66,64 @@
- 'phylo_hmm_info' in extra_outputs
+ extra_outputs and 'phylo_hmm_info' in extra_outputs
- 'bin_stats_tree' in extra_outputs
+ extra_outputs and 'bin_stats_tree' in extra_outputs
- 'hmmer_tree' in extra_outputs
+ extra_outputs and 'hmmer_tree' in extra_outputs
- 'concatenated_fasta' in extra_outputs
+ extra_outputs and 'concatenated_fasta' in extra_outputs
- 'concatenated_tre' in extra_outputs
+ extra_outputs and 'concatenated_tre' in extra_outputs
- tree_analyze['ali'] and 'hmmer_tree_ali' in extra_outputs
+ tree_analyze['ali'] and extra_outputs and 'hmmer_tree_ali' in extra_outputs
- 'concatenate_pplacer_json' in extra_outputs
+ extra_outputs and 'concatenate_pplacer_json' in extra_outputs
- not tree_analyze['genes'] and tree_analyze['nt'] and 'genes_fna' in extra_outputs
+ not tree_analyze['genes'] and tree_analyze['nt'] and extra_outputs and 'genes_fna' in extra_outputs
- 'genes_faa' in extra_outputs
+ extra_outputs and 'genes_faa' in extra_outputs
- not tree_analyze['genes'] and 'genes_gff' in extra_outputs
+ not tree_analyze['genes'] and extra_outputs and 'genes_gff' in extra_outputs
- 'marker_file' in extra_outputs
+ extra_outputs and 'marker_file' in extra_outputs
- 'hmmer_analyze' in extra_outputs
+ extra_outputs and 'hmmer_analyze' in extra_outputs
- 'bin_stats_analyze' in extra_outputs
+ extra_outputs and 'bin_stats_analyze' in extra_outputs
- 'checkm_hmm_info' in extra_outputs
+ extra_outputs and 'checkm_hmm_info' in extra_outputs
- tree_analyze['ali'] and 'hmmer_analyze_ali' in extra_outputs
+ tree_analyze['ali'] and extra_outputs and 'hmmer_analyze_ali' in extra_outputs
- 'bin_stats_ext' in extra_outputs
+ extra_outputs and 'bin_stats_ext' in extra_outputs
-
diff -r 760dc0c0e689 -r f0107b9f2dc3 macros.xml
--- a/macros.xml Fri Jul 29 20:30:08 2022 +0000
+++ b/macros.xml Mon Aug 08 19:59:56 2022 +0000
@@ -119,7 +119,7 @@
'alignment_file' in extra_outputs
-->
- 'marker_gene_stats' in extra_outputs
+ extra_outputs and 'marker_gene_stats' in extra_outputs