Mercurial > repos > iuc > checkm_plot
diff tool-data/genus.loc.sample @ 0:356839cd89d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
|---|---|
| date | Fri, 29 Jul 2022 20:37:57 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/genus.loc.sample Fri Jul 29 20:37:57 2022 +0000 @@ -0,0 +1,508 @@ +# File generated by format_taxon_list.py script +# taxon description +Acetobacter Acetobacter (11 genomes, 1037 marker genes, 392 marker sets) +Acholeplasma Acholeplasma (7 genomes, 309 marker genes, 151 marker sets) +Achromobacter Achromobacter (5 genomes, 1298 marker genes, 427 marker sets) +Acidaminococcus Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets) +Acidilobus Acidilobus (2 genomes, 645 marker genes, 144 marker sets) +Acidiphilium Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets) +Acidithiobacillus Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets) +Acidobacterium Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets) +Acidovorax Acidovorax (9 genomes, 931 marker genes, 335 marker sets) +Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) +Acinetobacter Acinetobacter (66 genomes, 883 marker genes, 281 marker sets) +Actinobacillus Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets) +Actinobaculum Actinobaculum (5 genomes, 606 marker genes, 222 marker sets) +Actinomadura Actinomadura (3 genomes, 940 marker genes, 376 marker sets) +Actinomyces Actinomyces (27 genomes, 432 marker genes, 214 marker sets) +Actinoplanes Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets) +Actinopolyspora Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets) +Aequorivita Aequorivita (2 genomes, 1087 marker genes, 283 marker sets) +Aerococcus Aerococcus (2 genomes, 719 marker genes, 247 marker sets) +Aeromonas Aeromonas (12 genomes, 1380 marker genes, 463 marker sets) +Aggregatibacter Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets) +Agrobacterium Agrobacterium (12 genomes, 994 marker genes, 379 marker sets) +Agromyces Agromyces (2 genomes, 1096 marker genes, 287 marker sets) +Ahrensia Ahrensia (2 genomes, 1213 marker genes, 422 marker sets) +Alcaligenes Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets) +Alcanivorax Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets) +Algoriphagus Algoriphagus (5 genomes, 947 marker genes, 361 marker sets) +Aliagarivorans Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets) +Alicycliphilus Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets) +Alicyclobacillus Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets) +Alishewanella Alishewanella (2 genomes, 1677 marker genes, 232 marker sets) +Alistipes Alistipes (5 genomes, 703 marker genes, 335 marker sets) +Alkaliphilus Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets) +Alloscardovia Alloscardovia (2 genomes, 950 marker genes, 116 marker sets) +Alteromonas Alteromonas (6 genomes, 1419 marker genes, 314 marker sets) +Aminobacterium Aminobacterium (2 genomes, 950 marker genes, 145 marker sets) +Amycolatopsis Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets) +Anabaena Anabaena (5 genomes, 992 marker genes, 584 marker sets) +Anaerococcus Anaerococcus (6 genomes, 665 marker genes, 181 marker sets) +Anaeromyxobacter Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets) +Anaplasma Anaplasma (2 genomes, 688 marker genes, 127 marker sets) +Anoxybacillus Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets) +Aquimarina Aquimarina (2 genomes, 1084 marker genes, 373 marker sets) +Archaeoglobus Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets) +Arcobacter Arcobacter (8 genomes, 804 marker genes, 234 marker sets) +Arenibacter Arenibacter (2 genomes, 1200 marker genes, 269 marker sets) +Arsenophonus Arsenophonus (4 genomes, 640 marker genes, 164 marker sets) +Arthrobacter Arthrobacter (25 genomes, 473 marker genes, 190 marker sets) +Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) +Asticcacaulis Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets) +Atopobium Atopobium (8 genomes, 486 marker genes, 194 marker sets) +Aurantimonas Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets) +Azoarcus Azoarcus (2 genomes, 1311 marker genes, 376 marker sets) +Azorhizobium Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets) +Azospira Azospira (2 genomes, 1578 marker genes, 218 marker sets) +Azospirillum Azospirillum (3 genomes, 1038 marker genes, 549 marker sets) +Azotobacter Azotobacter (3 genomes, 1930 marker genes, 269 marker sets) +Bacillus Bacillus (122 genomes, 491 marker genes, 170 marker sets) +Bacteroides Bacteroides (96 genomes, 524 marker genes, 282 marker sets) +Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) +Barnesiella Barnesiella (2 genomes, 1045 marker genes, 230 marker sets) +Bartonella Bartonella (29 genomes, 708 marker genes, 188 marker sets) +Bdellovibrio Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets) +Bifidobacterium Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets) +Blastococcus Blastococcus (2 genomes, 1123 marker genes, 317 marker sets) +Blattabacterium Blattabacterium (6 genomes, 547 marker genes, 16 marker sets) +Blautia Blautia (7 genomes, 649 marker genes, 291 marker sets) +Bordetella Bordetella (9 genomes, 892 marker genes, 277 marker sets) +Borrelia Borrelia (17 genomes, 474 marker genes, 66 marker sets) +Brachyspira Brachyspira (10 genomes, 783 marker genes, 458 marker sets) +Bradyrhizobium Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets) +Brevibacillus Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets) +Brevibacterium Brevibacterium (3 genomes, 833 marker genes, 259 marker sets) +Brevundimonas Brevundimonas (6 genomes, 952 marker genes, 452 marker sets) +Brucella Brucella (90 genomes, 1371 marker genes, 236 marker sets) +Buchnera Buchnera (10 genomes, 380 marker genes, 35 marker sets) +Burkholderia Burkholderia (66 genomes, 724 marker genes, 235 marker sets) +Butyricimonas Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets) +Butyrivibrio Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets) +Caldicellulosiruptor Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets) +Calothrix Calothrix (2 genomes, 1244 marker genes, 726 marker sets) +Campylobacter Campylobacter (55 genomes, 598 marker genes, 263 marker sets) +Candidatus Arthromitus Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets) +Candidatus Blochmannia Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets) +Candidatus Liberibacter Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets) +Candidatus Pelagibacter Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets) +Candidatus Pelagibacter-like Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets) +Candidatus Phytoplasma Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets) +Capnocytophaga Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets) +Carboxydothermus Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets) +Cardiobacterium Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets) +Caulobacter Caulobacter (4 genomes, 1219 marker genes, 375 marker sets) +Cellulomonas Cellulomonas (6 genomes, 805 marker genes, 257 marker sets) +Cellulophaga Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets) +Chitinilyticum Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets) +Chlamydia Chlamydia (43 genomes, 609 marker genes, 88 marker sets) +Chlamydophila Chlamydophila (16 genomes, 616 marker genes, 71 marker sets) +Chlorobaculum Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets) +Chlorobium Chlorobium (6 genomes, 820 marker genes, 277 marker sets) +Chloroflexus Chloroflexus (5 genomes, 659 marker genes, 449 marker sets) +Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) +Chryseobacterium Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets) +Citreicella Citreicella (2 genomes, 1369 marker genes, 390 marker sets) +Citrobacter Citrobacter (8 genomes, 1566 marker genes, 347 marker sets) +Citromicrobium Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets) +Clavibacter Clavibacter (2 genomes, 1152 marker genes, 228 marker sets) +Clostridium Clostridium (180 genomes, 308 marker genes, 161 marker sets) +Cohnella Cohnella (3 genomes, 1072 marker genes, 306 marker sets) +Collinsella Collinsella (2 genomes, 829 marker genes, 315 marker sets) +Colwellia Colwellia (3 genomes, 1371 marker genes, 293 marker sets) +Comamonas Comamonas (5 genomes, 1047 marker genes, 399 marker sets) +Commensalibacter Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets) +Conchiformibius Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets) +Coprobacillus Coprobacillus (3 genomes, 833 marker genes, 331 marker sets) +Coprococcus Coprococcus (3 genomes, 780 marker genes, 260 marker sets) +Coprothermobacter Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets) +Corynebacterium Corynebacterium (80 genomes, 585 marker genes, 243 marker sets) +Coxiella Coxiella (5 genomes, 1047 marker genes, 146 marker sets) +Cronobacter Cronobacter (4 genomes, 1838 marker genes, 338 marker sets) +Cupriavidus Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets) +Curtobacterium Curtobacterium (2 genomes, 952 marker genes, 330 marker sets) +Curvibacter Curvibacter (2 genomes, 1707 marker genes, 367 marker sets) +Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) +Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) +Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) +Cycloclasticus Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets) +Cytophaga Cytophaga (3 genomes, 745 marker genes, 464 marker sets) +Dechloromonas Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets) +Dehalobacter Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets) +Dehalococcoides Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets) +Deinococcus Deinococcus (16 genomes, 630 marker genes, 426 marker sets) +Delftia Delftia (3 genomes, 1683 marker genes, 409 marker sets) +Desulfatibacillum Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets) +Desulfobacterium Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets) +Desulfobulbus Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets) +Desulfomicrobium Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets) +Desulfosporosinus Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets) +Desulfotignum Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets) +Desulfotomaculum Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets) +Desulfovibrio Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets) +Desulfurococcus Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets) +Dialister Dialister (4 genomes, 695 marker genes, 210 marker sets) +Dickeya Dickeya (4 genomes, 1671 marker genes, 311 marker sets) +Dictyoglomus Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets) +Dorea Dorea (4 genomes, 835 marker genes, 261 marker sets) +Dyadobacter Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets) +Dysgonomonas Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets) +Echinicola Echinicola (2 genomes, 1196 marker genes, 350 marker sets) +Ectothiorhodospira Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets) +Edwardsiella Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets) +Eggerthella Eggerthella (4 genomes, 843 marker genes, 301 marker sets) +Ehrlichia Ehrlichia (6 genomes, 704 marker genes, 87 marker sets) +Elizabethkingia Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets) +Ensifer Ensifer (26 genomes, 1043 marker genes, 323 marker sets) +Enterobacter Enterobacter (13 genomes, 1338 marker genes, 370 marker sets) +Enterococcus Enterococcus (51 genomes, 672 marker genes, 259 marker sets) +Enterovibrio Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets) +Entomoplasma Entomoplasma (3 genomes, 460 marker genes, 109 marker sets) +Eremococcus Eremococcus (2 genomes, 922 marker genes, 109 marker sets) +Erwinia Erwinia (8 genomes, 1420 marker genes, 280 marker sets) +Erysipelothrix Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets) +Erythrobacter Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets) +Escherichia Escherichia (27 genomes, 1212 marker genes, 320 marker sets) +Eubacterium Eubacterium (18 genomes, 234 marker genes, 157 marker sets) +Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) +Facklamia Facklamia (5 genomes, 575 marker genes, 184 marker sets) +Faecalibacterium Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets) +Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) +Ferrimonas Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets) +Finegoldia Finegoldia (5 genomes, 878 marker genes, 111 marker sets) +Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) +Flavobacterium Flavobacterium (20 genomes, 575 marker genes, 320 marker sets) +Flexibacter Flexibacter (3 genomes, 877 marker genes, 663 marker sets) +Francisella Francisella (40 genomes, 787 marker genes, 238 marker sets) +Frankia Frankia (11 genomes, 597 marker genes, 285 marker sets) +Fusobacterium Fusobacterium (21 genomes, 502 marker genes, 210 marker sets) +Gallibacterium Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets) +Gardnerella Gardnerella (14 genomes, 621 marker genes, 237 marker sets) +Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) +Geobacillus Geobacillus (15 genomes, 823 marker genes, 228 marker sets) +Geobacter Geobacter (10 genomes, 732 marker genes, 332 marker sets) +Gillisia Gillisia (2 genomes, 1096 marker genes, 276 marker sets) +Glaciecola Glaciecola (9 genomes, 1063 marker genes, 369 marker sets) +Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) +Gluconacetobacter Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets) +Gluconobacter Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets) +Glycomyces Glycomyces (2 genomes, 1177 marker genes, 326 marker sets) +Gordonia Gordonia (26 genomes, 670 marker genes, 298 marker sets) +Gramella Gramella (3 genomes, 1089 marker genes, 213 marker sets) +Granulicatella Granulicatella (2 genomes, 891 marker genes, 249 marker sets) +Granulicella Granulicella (2 genomes, 1075 marker genes, 507 marker sets) +Haemophilus Haemophilus (35 genomes, 829 marker genes, 480 marker sets) +Hahella Hahella (2 genomes, 1567 marker genes, 475 marker sets) +Halalkalicoccus Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets) +Halanaerobium Halanaerobium (2 genomes, 898 marker genes, 186 marker sets) +Haliea Haliea (2 genomes, 1214 marker genes, 329 marker sets) +Haloarcula Haloarcula (7 genomes, 842 marker genes, 250 marker sets) +Halobacillus Halobacillus (3 genomes, 1266 marker genes, 292 marker sets) +Halobacterium Halobacterium (3 genomes, 704 marker genes, 224 marker sets) +Halobiforma Halobiforma (2 genomes, 1026 marker genes, 320 marker sets) +Halococcus Halococcus (2 genomes, 767 marker genes, 347 marker sets) +Haloferax Haloferax (10 genomes, 763 marker genes, 229 marker sets) +Halomicrobium Halomicrobium (2 genomes, 970 marker genes, 233 marker sets) +Halomonas Halomonas (11 genomes, 840 marker genes, 268 marker sets) +Haloquadratum Haloquadratum (3 genomes, 798 marker genes, 192 marker sets) +Halorubrum Halorubrum (4 genomes, 710 marker genes, 295 marker sets) +Haloterrigena Haloterrigena (2 genomes, 826 marker genes, 332 marker sets) +Helicobacter Helicobacter (33 genomes, 490 marker genes, 276 marker sets) +Herbaspirillum Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets) +Hippea Hippea (3 genomes, 979 marker genes, 157 marker sets) +Hirschia Hirschia (2 genomes, 1333 marker genes, 222 marker sets) +Histophilus Histophilus (2 genomes, 1341 marker genes, 98 marker sets) +Hydrogenobacter Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets) +Hydrogenobaculum Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets) +Hymenobacter Hymenobacter (3 genomes, 998 marker genes, 370 marker sets) +Hyphomicrobium Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets) +Idiomarina Idiomarina (5 genomes, 1057 marker genes, 247 marker sets) +Isoptericola Isoptericola (2 genomes, 1351 marker genes, 168 marker sets) +Janibacter Janibacter (2 genomes, 1001 marker genes, 385 marker sets) +Janthinobacterium Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets) +Jeotgalicoccus Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets) +Jonesia Jonesia (2 genomes, 1211 marker genes, 191 marker sets) +Jonquetella Jonquetella (2 genomes, 987 marker genes, 78 marker sets) +Kaistia Kaistia (2 genomes, 1516 marker genes, 278 marker sets) +Kandleria Kandleria (3 genomes, 1026 marker genes, 154 marker sets) +Kangiella Kangiella (2 genomes, 1480 marker genes, 165 marker sets) +Kingella Kingella (3 genomes, 1040 marker genes, 614 marker sets) +Klebsiella Klebsiella (29 genomes, 1359 marker genes, 348 marker sets) +Labrenzia Labrenzia (2 genomes, 1431 marker genes, 424 marker sets) +Lachnobacterium Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets) +Lachnospira Lachnospira (3 genomes, 1045 marker genes, 196 marker sets) +Lactobacillus Lactobacillus (135 genomes, 409 marker genes, 155 marker sets) +Lactococcus Lactococcus (14 genomes, 683 marker genes, 238 marker sets) +Laribacter Laribacter (2 genomes, 1579 marker genes, 150 marker sets) +Leeuwenhoekiella Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets) +Legionella Legionella (18 genomes, 695 marker genes, 290 marker sets) +Leifsonia Leifsonia (2 genomes, 888 marker genes, 212 marker sets) +Leisingera Leisingera (3 genomes, 1200 marker genes, 365 marker sets) +Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) +Leptospira Leptospira (4 genomes, 1176 marker genes, 280 marker sets) +Leptotrichia Leptotrichia (7 genomes, 750 marker genes, 335 marker sets) +Leucobacter Leucobacter (2 genomes, 948 marker genes, 255 marker sets) +Leuconostoc Leuconostoc (15 genomes, 611 marker genes, 181 marker sets) +Lewinella Lewinella (2 genomes, 1073 marker genes, 736 marker sets) +Listeria Listeria (24 genomes, 1137 marker genes, 165 marker sets) +Loktanella Loktanella (5 genomes, 1000 marker genes, 308 marker sets) +Luteimonas Luteimonas (2 genomes, 1277 marker genes, 311 marker sets) +Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) +Lysinibacillus Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets) +Lysobacter Lysobacter (2 genomes, 1235 marker genes, 265 marker sets) +Magnetospirillum Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets) +Mannheimia Mannheimia (4 genomes, 1320 marker genes, 245 marker sets) +Maribacter Maribacter (3 genomes, 905 marker genes, 290 marker sets) +Marinobacter Marinobacter (8 genomes, 993 marker genes, 273 marker sets) +Marinobacterium Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets) +Marinomonas Marinomonas (4 genomes, 1256 marker genes, 320 marker sets) +Mariprofundus Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets) +Maritimibacter Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets) +Massilia Massilia (3 genomes, 1363 marker genes, 402 marker sets) +Megamonas Megamonas (3 genomes, 1113 marker genes, 288 marker sets) +Megasphaera Megasphaera (7 genomes, 696 marker genes, 211 marker sets) +Meiothermus Meiothermus (7 genomes, 852 marker genes, 456 marker sets) +Mesoplasma Mesoplasma (5 genomes, 409 marker genes, 104 marker sets) +Mesorhizobium Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets) +Metallosphaera Metallosphaera (3 genomes, 690 marker genes, 177 marker sets) +Methanobacterium Methanobacterium (3 genomes, 797 marker genes, 214 marker sets) +Methanobrevibacter Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets) +Methanocaldococcus Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets) +Methanocella Methanocella (3 genomes, 712 marker genes, 317 marker sets) +Methanococcus Methanococcus (7 genomes, 710 marker genes, 377 marker sets) +Methanocorpusculum Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets) +Methanolobus Methanolobus (2 genomes, 944 marker genes, 240 marker sets) +Methanoplanus Methanoplanus (2 genomes, 830 marker genes, 217 marker sets) +Methanosaeta Methanosaeta (3 genomes, 700 marker genes, 354 marker sets) +Methanosarcina Methanosarcina (3 genomes, 849 marker genes, 306 marker sets) +Methanothermobacter Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets) +Methanothermococcus Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets) +Methanotorris Methanotorris (2 genomes, 891 marker genes, 279 marker sets) +Methylobacter Methylobacter (2 genomes, 1294 marker genes, 436 marker sets) +Methylobacterium Methylobacterium (16 genomes, 606 marker genes, 394 marker sets) +Methylococcus Methylococcus (2 genomes, 1613 marker genes, 188 marker sets) +Methylocystis Methylocystis (3 genomes, 1172 marker genes, 334 marker sets) +Methylomicrobium Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets) +Methylomonas Methylomonas (4 genomes, 1325 marker genes, 423 marker sets) +Methylophaga Methylophaga (4 genomes, 1119 marker genes, 219 marker sets) +Methylophilus Methylophilus (4 genomes, 1346 marker genes, 180 marker sets) +Methylopila Methylopila (2 genomes, 1430 marker genes, 482 marker sets) +Methylosarcina Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets) +Methylosinus Methylosinus (3 genomes, 1300 marker genes, 501 marker sets) +Methylotenera Methylotenera (6 genomes, 1078 marker genes, 217 marker sets) +Methyloversatilis Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets) +Methylovorus Methylovorus (2 genomes, 1496 marker genes, 132 marker sets) +Microbacterium Microbacterium (11 genomes, 623 marker genes, 280 marker sets) +Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) +Micromonospora Micromonospora (5 genomes, 921 marker genes, 349 marker sets) +Microvirga Microvirga (2 genomes, 1319 marker genes, 353 marker sets) +Mobiluncus Mobiluncus (8 genomes, 830 marker genes, 222 marker sets) +Moorella Moorella (2 genomes, 1125 marker genes, 231 marker sets) +Moraxella Moraxella (10 genomes, 915 marker genes, 523 marker sets) +Morganella Morganella (2 genomes, 1883 marker genes, 217 marker sets) +Mycobacterium Mycobacterium (100 genomes, 693 marker genes, 300 marker sets) +Mycoplasma Mycoplasma (83 genomes, 226 marker genes, 133 marker sets) +Myroides Myroides (7 genomes, 948 marker genes, 335 marker sets) +Natrialba Natrialba (3 genomes, 716 marker genes, 277 marker sets) +Natrinema Natrinema (3 genomes, 796 marker genes, 297 marker sets) +Natronobacterium Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets) +Natronorubrum Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets) +Neisseria Neisseria (47 genomes, 887 marker genes, 501 marker sets) +Neorickettsia Neorickettsia (2 genomes, 678 marker genes, 16 marker sets) +Nesterenkonia Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets) +Niabella Niabella (2 genomes, 1123 marker genes, 403 marker sets) +Nisaea Nisaea (2 genomes, 1230 marker genes, 423 marker sets) +Nitratireductor Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets) +Nitratiruptor Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets) +Nitrobacter Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets) +Nitrosococcus Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets) +Nitrosomonas Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets) +Nitrosospira Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets) +Nocardia Nocardia (6 genomes, 799 marker genes, 372 marker sets) +Nocardioides Nocardioides (8 genomes, 683 marker genes, 299 marker sets) +Nocardiopsis Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets) +Nostoc Nostoc (5 genomes, 995 marker genes, 585 marker sets) +Novosphingobium Novosphingobium (5 genomes, 907 marker genes, 296 marker sets) +Oceanicaulis Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets) +Oceanicola Oceanicola (4 genomes, 998 marker genes, 439 marker sets) +Oceanimonas Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets) +Oceanobacillus Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets) +Oceanospirillum Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets) +Ochrobactrum Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets) +Octadecabacter Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets) +Odoribacter Odoribacter (2 genomes, 1031 marker genes, 350 marker sets) +Oenococcus Oenococcus (13 genomes, 679 marker genes, 136 marker sets) +Oligella Oligella (2 genomes, 1242 marker genes, 186 marker sets) +Oligotropha Oligotropha (2 genomes, 1592 marker genes, 192 marker sets) +Olleya Olleya (2 genomes, 1165 marker genes, 249 marker sets) +Olsenella Olsenella (2 genomes, 781 marker genes, 213 marker sets) +Oribacterium Oribacterium (5 genomes, 555 marker genes, 211 marker sets) +Orientia Orientia (2 genomes, 651 marker genes, 94 marker sets) +Ornithobacterium Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets) +Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) +Oxalobacter Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets) +Paenibacillus Paenibacillus (33 genomes, 473 marker genes, 180 marker sets) +Pantoea Pantoea (10 genomes, 1403 marker genes, 316 marker sets) +Parabacteroides Parabacteroides (6 genomes, 970 marker genes, 371 marker sets) +Parachlamydia Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets) +Paracoccus Paracoccus (8 genomes, 917 marker genes, 340 marker sets) +Paraprevotella Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets) +Parascardovia Parascardovia (2 genomes, 908 marker genes, 87 marker sets) +Pasteurella Pasteurella (8 genomes, 1083 marker genes, 458 marker sets) +Patulibacter Patulibacter (2 genomes, 1012 marker genes, 347 marker sets) +Pectobacterium Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets) +Pediococcus Pediococcus (7 genomes, 664 marker genes, 140 marker sets) +Pedobacter Pedobacter (5 genomes, 742 marker genes, 322 marker sets) +Pelobacter Pelobacter (2 genomes, 958 marker genes, 487 marker sets) +Pelodictyon Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets) +Pelosinus Pelosinus (3 genomes, 1539 marker genes, 333 marker sets) +Peptoniphilus Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets) +Peptostreptococcus Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets) +Persephonella Persephonella (3 genomes, 1036 marker genes, 256 marker sets) +Phaeobacter Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets) +Photobacterium Photobacterium (6 genomes, 1105 marker genes, 326 marker sets) +Photorhabdus Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets) +Planctomyces Planctomyces (3 genomes, 790 marker genes, 552 marker sets) +Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) +Planococcus Planococcus (2 genomes, 1321 marker genes, 253 marker sets) +Pleomorphomonas Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets) +Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) +Polaribacter Polaribacter (3 genomes, 942 marker genes, 301 marker sets) +Polaromonas Polaromonas (4 genomes, 1001 marker genes, 336 marker sets) +Polynucleobacter Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets) +Pontibacillus Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets) +Pontibacter Pontibacter (2 genomes, 1139 marker genes, 379 marker sets) +Porphyromonas Porphyromonas (18 genomes, 569 marker genes, 346 marker sets) +Prevotella Prevotella (65 genomes, 522 marker genes, 281 marker sets) +Prochlorococcus Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets) +Promicromonospora Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets) +Propionibacterium Propionibacterium (35 genomes, 632 marker genes, 302 marker sets) +Propionimicrobium Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets) +Proteus Proteus (2 genomes, 1888 marker genes, 231 marker sets) +Providencia Providencia (6 genomes, 1517 marker genes, 302 marker sets) +Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) +Pseudoalteromonas Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets) +Pseudobutyrivibrio Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets) +Pseudoclavibacter Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets) +Pseudogulbenkiania Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets) +Pseudomonas Pseudomonas (182 genomes, 833 marker genes, 312 marker sets) +Pseudonocardia Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets) +Pseudovibrio Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets) +Pseudoxanthomonas Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets) +Psychrobacter Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets) +Psychroflexus Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets) +Psychromonas Psychromonas (5 genomes, 1062 marker genes, 326 marker sets) +Pyrobaculum Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets) +Pyrococcus Pyrococcus (6 genomes, 654 marker genes, 266 marker sets) +Rahnella Rahnella (2 genomes, 1981 marker genes, 296 marker sets) +Ralstonia Ralstonia (14 genomes, 893 marker genes, 294 marker sets) +Rheinheimera Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets) +Rhizobium Rhizobium (40 genomes, 863 marker genes, 345 marker sets) +Rhodanobacter Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets) +Rhodobacter Rhodobacter (8 genomes, 992 marker genes, 372 marker sets) +Rhodococcus Rhodococcus (14 genomes, 715 marker genes, 302 marker sets) +Rhodonellum Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets) +Rhodopirellula Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets) +Rhodopseudomonas Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets) +Rhodospirillum Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets) +Rhodothermus Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets) +Rickettsia Rickettsia (43 genomes, 662 marker genes, 110 marker sets) +Riemerella Riemerella (6 genomes, 888 marker genes, 396 marker sets) +Roseburia Roseburia (2 genomes, 975 marker genes, 303 marker sets) +Roseiflexus Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets) +Roseobacter Roseobacter (7 genomes, 850 marker genes, 348 marker sets) +Roseomonas Roseomonas (2 genomes, 1576 marker genes, 318 marker sets) +Roseovarius Roseovarius (3 genomes, 1134 marker genes, 423 marker sets) +Rothia Rothia (6 genomes, 884 marker genes, 217 marker sets) +Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) +Rubrobacter Rubrobacter (2 genomes, 991 marker genes, 269 marker sets) +Ruegeria Ruegeria (7 genomes, 996 marker genes, 358 marker sets) +Ruminococcus Ruminococcus (13 genomes, 436 marker genes, 242 marker sets) +Runella Runella (3 genomes, 1097 marker genes, 525 marker sets) +Saccharibacillus Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets) +Saccharomonospora Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets) +Salinicoccus Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets) +Salinimicrobium Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets) +Salinispora Salinispora (45 genomes, 1031 marker genes, 284 marker sets) +Salmonella Salmonella (21 genomes, 1529 marker genes, 266 marker sets) +Saprospira Saprospira (2 genomes, 1147 marker genes, 326 marker sets) +Sediminibacterium Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets) +Selenomonas Selenomonas (21 genomes, 710 marker genes, 294 marker sets) +Serratia Serratia (13 genomes, 985 marker genes, 293 marker sets) +Shewanella Shewanella (26 genomes, 989 marker genes, 339 marker sets) +Shigella Shigella (34 genomes, 1437 marker genes, 348 marker sets) +Slackia Slackia (4 genomes, 616 marker genes, 193 marker sets) +Solirubrobacter Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets) +Solobacterium Solobacterium (2 genomes, 877 marker genes, 170 marker sets) +Sphaerochaeta Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets) +Sphingobacterium Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets) +Sphingobium Sphingobium (3 genomes, 1179 marker genes, 403 marker sets) +Sphingomonas Sphingomonas (11 genomes, 713 marker genes, 351 marker sets) +Sphingopyxis Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets) +Spirochaeta Spirochaeta (8 genomes, 487 marker genes, 211 marker sets) +Spirosoma Spirosoma (4 genomes, 993 marker genes, 460 marker sets) +Sporosarcina Sporosarcina (3 genomes, 999 marker genes, 269 marker sets) +Staphylococcus Staphylococcus (60 genomes, 773 marker genes, 178 marker sets) +Staphylothermus Staphylothermus (2 genomes, 676 marker genes, 104 marker sets) +Stenotrophomonas Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets) +Streptococcus Streptococcus (226 genomes, 551 marker genes, 259 marker sets) +Streptomyces Streptomyces (58 genomes, 506 marker genes, 264 marker sets) +Sulfitobacter Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets) +Sulfobacillus Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets) +Sulfolobus Sulfolobus (15 genomes, 621 marker genes, 152 marker sets) +Sulfurihydrogenibium Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets) +Sulfurimonas Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets) +Sulfurospirillum Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets) +Sutterella Sutterella (3 genomes, 935 marker genes, 232 marker sets) +Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) +Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) +Tannerella Tannerella (2 genomes, 822 marker genes, 441 marker sets) +Taylorella Taylorella (4 genomes, 1069 marker genes, 71 marker sets) +Tenacibaculum Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets) +Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) +Tetragenococcus Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets) +Thalassospira Thalassospira (3 genomes, 1406 marker genes, 326 marker sets) +Thauera Thauera (6 genomes, 1175 marker genes, 334 marker sets) +Thermacetogenium Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets) +Thermaerobacter Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets) +Thermanaerovibrio Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets) +Thermoanaerobacter Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets) +Thermoanaerobacterium Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets) +Thermobifida Thermobifida (2 genomes, 1421 marker genes, 225 marker sets) +Thermococcus Thermococcus (9 genomes, 552 marker genes, 286 marker sets) +Thermocrinis Thermocrinis (2 genomes, 941 marker genes, 515 marker sets) +Thermocrispum Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets) +Thermodesulfatator Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets) +Thermodesulfobacterium Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets) +Thermodesulfovibrio Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets) +Thermogladius Thermogladius (2 genomes, 711 marker genes, 60 marker sets) +Thermoplasma Thermoplasma (2 genomes, 733 marker genes, 167 marker sets) +Thermoproteus Thermoproteus (3 genomes, 600 marker genes, 281 marker sets) +Thermosipho Thermosipho (2 genomes, 1009 marker genes, 148 marker sets) +Thermotoga Thermotoga (8 genomes, 768 marker genes, 325 marker sets) +Thermus Thermus (14 genomes, 841 marker genes, 311 marker sets) +Thioalkalimicrobium Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets) +Thioalkalivibrio Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets) +Thiobacillus Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets) +Thiomicrospira Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets) +Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) +Thiothrix Thiothrix (4 genomes, 1003 marker genes, 417 marker sets) +Tolumonas Tolumonas (2 genomes, 1431 marker genes, 200 marker sets) +Treponema Treponema (28 genomes, 326 marker genes, 173 marker sets) +Turicibacter Turicibacter (2 genomes, 1183 marker genes, 236 marker sets) +Ureaplasma Ureaplasma (15 genomes, 372 marker genes, 51 marker sets) +Variovorax Variovorax (7 genomes, 1114 marker genes, 351 marker sets) +Veillonella Veillonella (13 genomes, 757 marker genes, 219 marker sets) +Verrucomicrobium Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets) +Vibrio Vibrio (70 genomes, 1084 marker genes, 381 marker sets) +Vulcanisaeta Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets) +Weissella Weissella (6 genomes, 534 marker genes, 171 marker sets) +Wigglesworthia Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets) +Wohlfahrtiimonas Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets) +Wolbachia Wolbachia (8 genomes, 427 marker genes, 275 marker sets) +Xanthobacter Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets) +Xanthomonas Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets) +Xenorhabdus Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets) +Xylella Xylella (10 genomes, 1207 marker genes, 178 marker sets) +Yersinia Yersinia (35 genomes, 1383 marker genes, 341 marker sets) +Zymomonas Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)