diff taxon_set.xml @ 0:e3f1c47246fd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/taxon_set.xml	Fri Jul 29 20:35:39 2022 +0000
@@ -0,0 +1,44 @@
+<tool id="checkm_taxon_set" name="CheckM taxon_set" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>
+        Generate taxonomic-specific marker set
+    </description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="biotools"/>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="exit_code"><![CDATA[
+checkm taxon_set
+    '$rank_taxon.rank'
+    '$rank_taxon.taxon.fields.value'
+    '$marker'
+    ]]></command>
+    <inputs>
+        <expand macro="rank_taxon"/>
+    </inputs>
+    <outputs>
+        <expand macro="marker_output" />
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <conditional name="rank_taxon">
+                <param name="rank" value="life"/>
+                <param name="taxon" value="Prokaryote"/>
+            </conditional>
+            <output name="marker" ftype="tabular">
+                <assert_contents>
+                    <has_text text="[Taxon Marker File]"/>
+                    <has_text text="Prokaryote"/>
+                    <has_text text="PF00318.15"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help><![CDATA[
+@HELP_HEADER@
+
+This command generates taxonomic-specific marker set
+    ]]></help>
+    <expand macro="citations"/>
+</tool>