Mercurial > repos > iuc > checkm_taxon_set
diff tool-data/class.loc.sample @ 0:e3f1c47246fd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
| author | iuc |
|---|---|
| date | Fri, 29 Jul 2022 20:35:39 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/class.loc.sample Fri Jul 29 20:35:39 2022 +0000 @@ -0,0 +1,57 @@ +# File generated by format_taxon_list.py script +# taxon description +Acidobacteriia Acidobacteriia (10 genomes, 572 marker genes, 395 marker sets) +Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) +Actinobacteria Actinobacteria (729 genomes, 205 marker genes, 119 marker sets) +Alphaproteobacteria Alphaproteobacteria (648 genomes, 225 marker genes, 148 marker sets) +Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets) +Archaeoglobi Archaeoglobi (5 genomes, 619 marker genes, 392 marker sets) +Bacilli Bacilli (821 genomes, 250 marker genes, 136 marker sets) +Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets) +Bacteroidia Bacteroidia (211 genomes, 401 marker genes, 266 marker sets) +Betaproteobacteria Betaproteobacteria (322 genomes, 387 marker genes, 234 marker sets) +Chlamydiia Chlamydiia (64 genomes, 455 marker genes, 185 marker sets) +Chlorobia Chlorobia (12 genomes, 612 marker genes, 333 marker sets) +Chloroflexi Chloroflexi (9 genomes, 452 marker genes, 315 marker sets) +Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets) +Clostridia Clostridia (446 genomes, 196 marker genes, 110 marker sets) +Cytophagia Cytophagia (48 genomes, 438 marker genes, 328 marker sets) +Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets) +Dehalococcoidetes Dehalococcoidetes (5 genomes, 755 marker genes, 54 marker sets) +Deinococci Deinococci (40 genomes, 528 marker genes, 359 marker sets) +Deltaproteobacteria Deltaproteobacteria (93 genomes, 197 marker genes, 125 marker sets) +Dictyoglomia Dictyoglomia (2 genomes, 1060 marker genes, 103 marker sets) +Epsilonproteobacteria Epsilonproteobacteria (111 genomes, 445 marker genes, 271 marker sets) +Erysipelotrichi Erysipelotrichi (18 genomes, 301 marker genes, 159 marker sets) +Flavobacteriia Flavobacteriia (126 genomes, 321 marker genes, 202 marker sets) +Fusobacteriia Fusobacteriia (32 genomes, 289 marker genes, 159 marker sets) +Gammaproteobacteria Gammaproteobacteria (1167 genomes, 280 marker genes, 178 marker sets) +Halobacteria Halobacteria (59 genomes, 367 marker genes, 241 marker sets) +Holophagae Holophagae (2 genomes, 883 marker genes, 459 marker sets) +Ignavibacteria Ignavibacteria (2 genomes, 1003 marker genes, 383 marker sets) +Methanobacteria Methanobacteria (12 genomes, 513 marker genes, 264 marker sets) +Methanococci Methanococci (16 genomes, 610 marker genes, 439 marker sets) +Methanomicrobia Methanomicrobia (29 genomes, 248 marker genes, 165 marker sets) +Mollicutes Mollicutes (119 genomes, 177 marker genes, 105 marker sets) +Negativicutes Negativicutes (64 genomes, 334 marker genes, 167 marker sets) +Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets) +Nitrospira Nitrospira (4 genomes, 676 marker genes, 379 marker sets) +Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets) +Opitutae Opitutae (4 genomes, 676 marker genes, 427 marker sets) +Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets) +Planctomycetia Planctomycetia (11 genomes, 360 marker genes, 256 marker sets) +Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets) +Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets) +Solirubrobacterales Solirubrobacterales (2 genomes, 995 marker genes, 398 marker sets) +Sphingobacteriia Sphingobacteriia (27 genomes, 334 marker genes, 233 marker sets) +Spirochaetia Spirochaetia (71 genomes, 218 marker genes, 127 marker sets) +Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets) +Synergistia Synergistia (13 genomes, 452 marker genes, 160 marker sets) +Thermococci Thermococci (16 genomes, 500 marker genes, 315 marker sets) +Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets) +Thermomicrobia Thermomicrobia (2 genomes, 933 marker genes, 336 marker sets) +Thermoplasmata Thermoplasmata (4 genomes, 563 marker genes, 310 marker sets) +Thermoprotei Thermoprotei (54 genomes, 217 marker genes, 168 marker sets) +Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets) +Verrucomicrobiae Verrucomicrobiae (7 genomes, 403 marker genes, 284 marker sets) +Zetaproteobacteria Zetaproteobacteria (2 genomes, 1329 marker genes, 184 marker sets)