Mercurial > repos > iuc > checkm_taxonomy_wf
view tool-data/family.loc.sample @ 2:19e4e2d98ebb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 3ae2bd72f789518e95ef65b97e0e5ac90165e113
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 13:51:50 +0000 |
| parents | 91230b9141c1 |
| children |
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# File generated by format_taxon_list.py script # taxon description Acetobacteraceae Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets) Acholeplasmataceae Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets) Acidaminococcaceae Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets) Acidilobaceae Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets) Acidithiobacillaceae Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets) Acidobacteriaceae Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets) Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets) Actinomycetaceae Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets) Actinopolysporaceae Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets) Aerococcaceae Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets) Aeromonadaceae Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets) Alcaligenaceae Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets) Alcanivoracaceae Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets) Alicyclobacillaceae Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets) Alteromonadaceae Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets) Anaplasmataceae Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets) Aquificaceae Aquificaceae (10 genomes, 656 marker genes, 475 marker sets) Archaeoglobaceae Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets) Arthrospira Arthrospira (2 genomes, 1432 marker genes, 419 marker sets) Aurantimonadaceae Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets) Bacillaceae Bacillaceae (162 genomes, 418 marker genes, 155 marker sets) Bacteroidaceae Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets) Bankia Bankia (2 genomes, 1388 marker genes, 332 marker sets) Bartonellaceae Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets) Bdellovibrionaceae Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets) Beijerinckiaceae Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets) Bifidobacteriaceae Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets) Blattabacteriaceae Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets) Brachyspiraceae Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets) Bradyrhizobiaceae Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets) Brevibacteriaceae Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets) Brucellaceae Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets) Burkholderiaceae Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets) Campylobacteraceae Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets) Cardiobacteriaceae Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets) Carnobacteriaceae Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets) Caulobacteraceae Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets) Cellulomonadaceae Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets) Chitinophagaceae Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets) Chlamydiaceae Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets) Chlorobiaceae Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets) Chloroflexaceae Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets) Chromatiaceae Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets) Chroococcidiopsis Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets) Clostridiaceae Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets) Clostridiales Family XI. Incertae Sedis Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets) Clostridiales Family XVII. Incertae Sedis Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets) Colwelliaceae Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets) Comamonadaceae Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets) Conexibacteraceae Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets) Coriobacteriaceae Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets) Corynebacteriaceae Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets) Coxiellaceae Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets) Cryomorphaceae Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets) Cyanobacterium Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets) Cyanobium Cyanobium (2 genomes, 1225 marker genes, 277 marker sets) Cyanothece Cyanothece (8 genomes, 865 marker genes, 653 marker sets) Cyclobacteriaceae Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets) Cytophagaceae Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets) Deferribacteraceae Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets) Dehalococcoidaceae Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets) Deinococcaceae Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets) Dermabacteraceae Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets) Dermacoccaceae Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets) Dermatophilaceae Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets) Desulfobacteraceae Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets) Desulfobulbaceae Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets) Desulfohalobiaceae Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets) Desulfomicrobiaceae Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets) Desulfovibrionaceae Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets) Desulfurellaceae Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets) Desulfurobacteriaceae Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets) Desulfurococcaceae Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets) Dictyoglomaceae Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets) Ectothiorhodospiraceae Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets) Enterobacteriaceae Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets) Enterococcaceae Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets) Entomoplasmataceae Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets) Erysipelotrichaceae Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets) Erythrobacteraceae Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets) Eubacteriaceae Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets) Exiguobacterium Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets) Fangia Fangia (2 genomes, 1383 marker genes, 144 marker sets) Ferrimonadaceae Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets) Fischerella Fischerella (4 genomes, 1081 marker genes, 585 marker sets) Flammeovirgaceae Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets) Flavobacteriaceae Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets) Francisellaceae Francisellaceae (40 genomes, 787 marker genes, 238 marker sets) Frankiaceae Frankiaceae (12 genomes, 569 marker genes, 282 marker sets) Fusobacteriaceae Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets) Gemella Gemella (5 genomes, 787 marker genes, 169 marker sets) Geobacteraceae Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets) Geodermatophilaceae Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets) Gloeocapsa Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets) Glycomycetaceae Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets) Gordoniaceae Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets) Hahellaceae Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets) Halanaerobiaceae Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets) Halobacteriaceae Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets) Halobacteroidaceae Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets) Halomonadaceae Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets) Helicobacteraceae Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets) Holophagaceae Holophagaceae (2 genomes, 883 marker genes, 459 marker sets) Hydrogenophilaceae Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets) Hydrogenothermaceae Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets) Hyphomicrobiaceae Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets) Hyphomonadaceae Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets) Idiomarinaceae Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets) Intrasporangiaceae Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets) Jonesiaceae Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets) Lachnospiraceae Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets) Lactobacillaceae Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets) Legionellaceae Legionellaceae (18 genomes, 695 marker genes, 290 marker sets) Leptolyngbya Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets) Leptospiraceae Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets) Leptotrichiaceae Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets) Leuconostocaceae Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets) Listeriaceae Listeriaceae (25 genomes, 873 marker genes, 158 marker sets) Lyngbya Lyngbya (2 genomes, 1111 marker genes, 753 marker sets) Mariprofundaceae Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets) Methanobacteriaceae Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets) Methanocaldococcaceae Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets) Methanocellaceae Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets) Methanococcaceae Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets) Methanocorpusculaceae Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets) Methanomicrobiaceae Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets) Methanoregulaceae Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets) Methanosaetaceae Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets) Methanosarcinaceae Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets) Methylobacteriaceae Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets) Methylococcaceae Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets) Methylocystaceae Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets) Methylophilaceae Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets) Microbacteriaceae Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets) Microchaetaceae Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets) Micrococcaceae Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets) Microcoleus Microcoleus (2 genomes, 1191 marker genes, 754 marker sets) Micromonosporaceae Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets) Moraxellaceae Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets) Mycobacteriaceae Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets) Mycoplasmataceae Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets) Myxococcaceae Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets) Nakamurellaceae Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets) Nautiliaceae Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets) Neisseriaceae Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets) Nitrosomonadaceae Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets) Nitrosopumilaceae Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets) Nitrospiraceae Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets) Nocardiaceae Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets) Nocardioidaceae Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets) Nocardiopsaceae Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets) Nostocaceae Nostocaceae (13 genomes, 800 marker genes, 536 marker sets) Oceanospirillaceae Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets) Opitutaceae Opitutaceae (3 genomes, 859 marker genes, 521 marker sets) Oscillatoria Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets) Oxalobacteraceae Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets) Paenibacillaceae Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets) Parachlamydiaceae Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets) Pasteurellaceae Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets) Patulibacteraceae Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets) Pelagibacteraceae Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets) Pelobacteraceae Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets) Peptococcaceae Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets) Peptostreptococcaceae Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets) Phyllobacteriaceae Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets) Piscirickettsiaceae Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets) Planctomycetaceae Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets) Planktothrix Planktothrix (6 genomes, 1307 marker genes, 425 marker sets) Planococcaceae Planococcaceae (6 genomes, 823 marker genes, 233 marker sets) Pleurocapsa Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets) Porphyromonadaceae Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets) Prevotellaceae Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets) Prochlorococcaceae Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets) Promicromonosporaceae Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets) Propionibacteriaceae Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets) Pseudanabaena Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets) Pseudoalteromonadaceae Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets) Pseudomonadaceae Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets) Pseudonocardiaceae Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets) Psychromonadaceae Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets) Pyrodictiaceae Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets) Rhizobiaceae Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets) Rhodobacteraceae Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets) Rhodobiaceae Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets) Rhodocyclaceae Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets) Rhodospirillaceae Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets) Rhodothermaceae Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets) Rickettsiaceae Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets) Rikenellaceae Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets) Rivulariaceae Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets) Rubrivivax Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets) Rubrobacteraceae Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets) Ruminococcaceae Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets) Saprospiraceae Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets) Shewanellaceae Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets) Sinobacteraceae Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets) Solirubrobacteraceae Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets) Sphingobacteriaceae Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets) Sphingomonadaceae Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets) Spirochaetaceae Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets) Sporolactobacillaceae Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets) Staphylococcaceae Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets) Streptococcaceae Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets) Streptomycetaceae Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets) Streptosporangiaceae Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets) Succinivibrionaceae Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets) Sulfolobaceae Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets) Sutterellaceae Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets) Synechococcus Synechococcus (25 genomes, 554 marker genes, 425 marker sets) Synechocystis Synechocystis (5 genomes, 1099 marker genes, 794 marker sets) Synergistaceae Synergistaceae (13 genomes, 452 marker genes, 160 marker sets) Syntrophomonadaceae Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets) Teredinibacter Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets) Thermaceae Thermaceae (23 genomes, 585 marker genes, 331 marker sets) Thermoactinomycetaceae Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets) Thermoanaerobacteraceae Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets) Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets) Thermococcaceae Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets) Thermodesulfobacteriaceae Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets) Thermodesulfobiaceae Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets) Thermomonosporaceae Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets) Thermoplasmataceae Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets) Thermoproteaceae Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets) Thermotogaceae Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets) Thiomonas Thiomonas (3 genomes, 1202 marker genes, 366 marker sets) Thiotrichaceae Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets) Veillonellaceae Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets) Verrucomicrobiaceae Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets) Vibrionaceae Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets) Xanthobacteraceae Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets) Xanthomonadaceae Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)