Mercurial > repos > iuc > checkm_tree
view tool-data/species.loc.sample @ 0:9b2790bca5b5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
author | iuc |
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date | Fri, 29 Jul 2022 20:29:27 +0000 |
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# File generated by format_taxon_list.py script # taxon description Acetobacter pasteurianus Acetobacter pasteurianus (9 genomes, 1384 marker genes, 160 marker sets) Achromobacter piechaudii Achromobacter piechaudii (2 genomes, 1606 marker genes, 428 marker sets) Achromobacter xylosoxidans Achromobacter xylosoxidans (2 genomes, 1503 marker genes, 445 marker sets) Acidaminococcus intestini Acidaminococcus intestini (2 genomes, 1109 marker genes, 140 marker sets) Acidithiobacillus caldus Acidithiobacillus caldus (2 genomes, 1196 marker genes, 153 marker sets) Acidithiobacillus ferrooxidans Acidithiobacillus ferrooxidans (2 genomes, 1293 marker genes, 128 marker sets) Acidovorax avenae Acidovorax avenae (2 genomes, 1633 marker genes, 327 marker sets) Acinetobacter baumanni Acinetobacter baumanni (5 genomes, 1413 marker genes, 231 marker sets) Acinetobacter baumannii Acinetobacter baumannii (20 genomes, 1018 marker genes, 298 marker sets) Acinetobacter baylyi Acinetobacter baylyi (2 genomes, 1608 marker genes, 195 marker sets) Acinetobacter calcoaceticus Acinetobacter calcoaceticus (5 genomes, 1444 marker genes, 252 marker sets) Acinetobacter johnsonii Acinetobacter johnsonii (2 genomes, 1439 marker genes, 204 marker sets) Acinetobacter junii Acinetobacter junii (4 genomes, 1336 marker genes, 222 marker sets) Acinetobacter lwoffii Acinetobacter lwoffii (3 genomes, 1363 marker genes, 221 marker sets) Acinetobacter nosocomialis Acinetobacter nosocomialis (2 genomes, 1542 marker genes, 214 marker sets) Acinetobacter radioresistens Acinetobacter radioresistens (5 genomes, 1354 marker genes, 199 marker sets) Actinobacillus pleuropneumoniae Actinobacillus pleuropneumoniae (13 genomes, 1332 marker genes, 210 marker sets) Actinobaculum schaalii Actinobaculum schaalii (2 genomes, 951 marker genes, 128 marker sets) Actinomyces graevenitzii Actinomyces graevenitzii (2 genomes, 1014 marker genes, 144 marker sets) Actinomyces naeslundii Actinomyces naeslundii (2 genomes, 1068 marker genes, 299 marker sets) Actinomyces neuii Actinomyces neuii (2 genomes, 1053 marker genes, 132 marker sets) Actinomyces odontolyticus Actinomyces odontolyticus (2 genomes, 1061 marker genes, 179 marker sets) Aeromonas hydrophila Aeromonas hydrophila (3 genomes, 1847 marker genes, 312 marker sets) Aeromonas veronii Aeromonas veronii (6 genomes, 1752 marker genes, 329 marker sets) Aggregatibacter actinomycetemcomitans Aggregatibacter actinomycetemcomitans (10 genomes, 1164 marker genes, 217 marker sets) Agrobacterium tumefaciens Agrobacterium tumefaciens (2 genomes, 1574 marker genes, 278 marker sets) Alicycliphilus denitrificans Alicycliphilus denitrificans (2 genomes, 1650 marker genes, 258 marker sets) Alicyclobacillus acidocaldarius Alicyclobacillus acidocaldarius (2 genomes, 1329 marker genes, 157 marker sets) Alloscardovia omnicolens Alloscardovia omnicolens (2 genomes, 950 marker genes, 116 marker sets) Alteromonas macleodii Alteromonas macleodii (4 genomes, 1539 marker genes, 274 marker sets) Amycolatopsis mediterranei Amycolatopsis mediterranei (3 genomes, 1557 marker genes, 526 marker sets) Anabaena circinalis Anabaena circinalis (2 genomes, 1357 marker genes, 362 marker sets) Anaerococcus prevotii Anaerococcus prevotii (2 genomes, 900 marker genes, 143 marker sets) Anaeromyxobacter dehalogenans Anaeromyxobacter dehalogenans (2 genomes, 1441 marker genes, 335 marker sets) Anoxybacillus flavithermus Anoxybacillus flavithermus (2 genomes, 1366 marker genes, 163 marker sets) Archaeoglobus fulgidus Archaeoglobus fulgidus (2 genomes, 975 marker genes, 111 marker sets) Arcobacter butzleri Arcobacter butzleri (4 genomes, 1067 marker genes, 144 marker sets) Arthrobacter nicotinovorans Arthrobacter nicotinovorans (2 genomes, 1382 marker genes, 287 marker sets) Arthrospira platensis Arthrospira platensis (2 genomes, 1432 marker genes, 419 marker sets) Atopobium vaginae Atopobium vaginae (2 genomes, 714 marker genes, 165 marker sets) Azotobacter vinelandii Azotobacter vinelandii (3 genomes, 1930 marker genes, 269 marker sets) Bacillus amyloliquefaciens Bacillus amyloliquefaciens (9 genomes, 1568 marker genes, 226 marker sets) Bacillus anthracis Bacillus anthracis (11 genomes, 1465 marker genes, 354 marker sets) Bacillus cereus Bacillus cereus (20 genomes, 1114 marker genes, 319 marker sets) Bacillus coagulans Bacillus coagulans (4 genomes, 1365 marker genes, 245 marker sets) Bacillus licheniformis Bacillus licheniformis (4 genomes, 1711 marker genes, 246 marker sets) Bacillus megaterium Bacillus megaterium (3 genomes, 1495 marker genes, 292 marker sets) Bacillus methanolicus Bacillus methanolicus (2 genomes, 1444 marker genes, 206 marker sets) Bacillus pumilus Bacillus pumilus (2 genomes, 1707 marker genes, 218 marker sets) Bacillus subtilis Bacillus subtilis (14 genomes, 1489 marker genes, 247 marker sets) Bacillus thuringiensis Bacillus thuringiensis (11 genomes, 1205 marker genes, 357 marker sets) Bacteroides caccae Bacteroides caccae (2 genomes, 1239 marker genes, 256 marker sets) Bacteroides dorei Bacteroides dorei (4 genomes, 1172 marker genes, 271 marker sets) Bacteroides eggerthii Bacteroides eggerthii (2 genomes, 1171 marker genes, 205 marker sets) Bacteroides fragilis Bacteroides fragilis (10 genomes, 1128 marker genes, 303 marker sets) Bacteroides massiliensis Bacteroides massiliensis (2 genomes, 1340 marker genes, 274 marker sets) Bacteroides ovatus Bacteroides ovatus (6 genomes, 1115 marker genes, 317 marker sets) Bacteroides stercoris Bacteroides stercoris (2 genomes, 1202 marker genes, 210 marker sets) Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron (6 genomes, 1177 marker genes, 313 marker sets) Bacteroides uniformis Bacteroides uniformis (2 genomes, 1214 marker genes, 253 marker sets) Bacteroides vulgatus Bacteroides vulgatus (5 genomes, 1162 marker genes, 307 marker sets) Bacteroides xylanisolvens Bacteroides xylanisolvens (12 genomes, 1025 marker genes, 325 marker sets) Bankia setacea Bankia setacea (2 genomes, 1388 marker genes, 332 marker sets) Bartonella clarridgeiae Bartonella clarridgeiae (2 genomes, 990 marker genes, 52 marker sets) Bartonella doshiae Bartonella doshiae (2 genomes, 1022 marker genes, 73 marker sets) Bartonella elizabethae Bartonella elizabethae (3 genomes, 1021 marker genes, 88 marker sets) Bartonella grahamii Bartonella grahamii (2 genomes, 1010 marker genes, 95 marker sets) Bartonella quintana Bartonella quintana (2 genomes, 945 marker genes, 55 marker sets) Bartonella tamiae Bartonella tamiae (2 genomes, 1379 marker genes, 94 marker sets) Bartonella vinsonii Bartonella vinsonii (4 genomes, 964 marker genes, 71 marker sets) Bartonella washoensis Bartonella washoensis (2 genomes, 1014 marker genes, 79 marker sets) Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus (2 genomes, 1015 marker genes, 305 marker sets) Bifidobacterium adolescentis Bifidobacterium adolescentis (3 genomes, 886 marker genes, 116 marker sets) Bifidobacterium animalis Bifidobacterium animalis (9 genomes, 871 marker genes, 113 marker sets) Bifidobacterium bifidum Bifidobacterium bifidum (5 genomes, 952 marker genes, 140 marker sets) Bifidobacterium breve Bifidobacterium breve (6 genomes, 871 marker genes, 166 marker sets) Bifidobacterium dentium Bifidobacterium dentium (3 genomes, 991 marker genes, 156 marker sets) Bifidobacterium longum Bifidobacterium longum (15 genomes, 750 marker genes, 214 marker sets) Bifidobacterium pseudolongum Bifidobacterium pseudolongum (2 genomes, 933 marker genes, 123 marker sets) Blautia producta Blautia producta (2 genomes, 1444 marker genes, 376 marker sets) Blautia wexlerae Blautia wexlerae (2 genomes, 1092 marker genes, 270 marker sets) Bordetella holmesii Bordetella holmesii (2 genomes, 1523 marker genes, 215 marker sets) Bordetella pertussis Bordetella pertussis (2 genomes, 1599 marker genes, 225 marker sets) Borrelia afzelii Borrelia afzelii (2 genomes, 598 marker genes, 23 marker sets) Borrelia burgdorferi Borrelia burgdorferi (7 genomes, 567 marker genes, 36 marker sets) Borrelia garinii Borrelia garinii (3 genomes, 596 marker genes, 51 marker sets) Brachyspira hyodysenteriae Brachyspira hyodysenteriae (2 genomes, 1143 marker genes, 201 marker sets) Brachyspira pilosicoli Brachyspira pilosicoli (4 genomes, 951 marker genes, 213 marker sets) Bradyrhizobium elkanii Bradyrhizobium elkanii (6 genomes, 1117 marker genes, 415 marker sets) Bradyrhizobium japonicum Bradyrhizobium japonicum (9 genomes, 1153 marker genes, 389 marker sets) Brevibacillus laterosporus Brevibacillus laterosporus (2 genomes, 1538 marker genes, 311 marker sets) Brucella abortus Brucella abortus (20 genomes, 1513 marker genes, 206 marker sets) Brucella canis Brucella canis (7 genomes, 1561 marker genes, 163 marker sets) Brucella ceti Brucella ceti (4 genomes, 1586 marker genes, 299 marker sets) Brucella melitensis Brucella melitensis (20 genomes, 1435 marker genes, 270 marker sets) Brucella ovis Brucella ovis (9 genomes, 1599 marker genes, 181 marker sets) Brucella pinnipedialis Brucella pinnipedialis (2 genomes, 1625 marker genes, 189 marker sets) Brucella suis Brucella suis (16 genomes, 1524 marker genes, 276 marker sets) Buchnera aphidicola Buchnera aphidicola (10 genomes, 380 marker genes, 35 marker sets) Burkholderia cenocepacia Burkholderia cenocepacia (5 genomes, 1585 marker genes, 398 marker sets) Burkholderia cepacia Burkholderia cepacia (5 genomes, 1353 marker genes, 330 marker sets) Burkholderia mallei Burkholderia mallei (9 genomes, 1503 marker genes, 397 marker sets) Burkholderia mimosarum Burkholderia mimosarum (2 genomes, 1813 marker genes, 442 marker sets) Burkholderia multivorans Burkholderia multivorans (4 genomes, 1688 marker genes, 361 marker sets) Burkholderia pseudomallei Burkholderia pseudomallei (12 genomes, 1626 marker genes, 455 marker sets) Butyrivibrio fibrisolvens Butyrivibrio fibrisolvens (4 genomes, 1083 marker genes, 302 marker sets) Butyrivibrio proteoclasticus Butyrivibrio proteoclasticus (2 genomes, 1016 marker genes, 327 marker sets) Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kristjanssonii (3 genomes, 1326 marker genes, 159 marker sets) Campylobacter coli Campylobacter coli (20 genomes, 955 marker genes, 188 marker sets) Campylobacter curvus Campylobacter curvus (2 genomes, 1090 marker genes, 92 marker sets) Campylobacter fetus Campylobacter fetus (2 genomes, 1143 marker genes, 80 marker sets) Campylobacter jejuni Campylobacter jejuni (20 genomes, 903 marker genes, 161 marker sets) Campylobacter showae Campylobacter showae (2 genomes, 1098 marker genes, 118 marker sets) Campylobacter upsaliensis Campylobacter upsaliensis (3 genomes, 1032 marker genes, 103 marker sets) Candidatus Pelagibacter ubique Candidatus Pelagibacter ubique (10 genomes, 779 marker genes, 128 marker sets) Candidatus Pelagibacter-like SAR11 Candidatus Pelagibacter-like SAR11 (3 genomes, 911 marker genes, 76 marker sets) Capnocytophaga ochracea Capnocytophaga ochracea (3 genomes, 1077 marker genes, 205 marker sets) Caulobacter crescentus Caulobacter crescentus (2 genomes, 1670 marker genes, 221 marker sets) Cellulomonas flavigena Cellulomonas flavigena (2 genomes, 1110 marker genes, 325 marker sets) Chlamydia muridarum Chlamydia muridarum (3 genomes, 683 marker genes, 35 marker sets) Chlamydia psittaci Chlamydia psittaci (20 genomes, 613 marker genes, 74 marker sets) Chlamydia trachomatis Chlamydia trachomatis (20 genomes, 641 marker genes, 41 marker sets) Chlamydophila pneumoniae Chlamydophila pneumoniae (5 genomes, 683 marker genes, 57 marker sets) Chlamydophila psittaci Chlamydophila psittaci (7 genomes, 706 marker genes, 40 marker sets) Chlorobium phaeobacteroides Chlorobium phaeobacteroides (2 genomes, 1081 marker genes, 255 marker sets) Citrobacter freundii Citrobacter freundii (3 genomes, 1937 marker genes, 327 marker sets) Clavibacter michiganensis Clavibacter michiganensis (2 genomes, 1152 marker genes, 228 marker sets) Clostridium acetobutylicum Clostridium acetobutylicum (3 genomes, 1498 marker genes, 242 marker sets) Clostridium beijerinckii Clostridium beijerinckii (2 genomes, 1312 marker genes, 318 marker sets) Clostridium bolteae Clostridium bolteae (5 genomes, 1147 marker genes, 316 marker sets) Clostridium botulinum Clostridium botulinum (15 genomes, 653 marker genes, 197 marker sets) Clostridium butyricum Clostridium butyricum (3 genomes, 1300 marker genes, 285 marker sets) Clostridium clariflavum Clostridium clariflavum (2 genomes, 1344 marker genes, 273 marker sets) Clostridium clostridioforme Clostridium clostridioforme (7 genomes, 995 marker genes, 304 marker sets) Clostridium difficile Clostridium difficile (20 genomes, 1098 marker genes, 329 marker sets) Clostridium glycolicum Clostridium glycolicum (2 genomes, 1385 marker genes, 238 marker sets) Clostridium kluyveri Clostridium kluyveri (2 genomes, 1377 marker genes, 212 marker sets) Clostridium pasteurianum Clostridium pasteurianum (2 genomes, 1184 marker genes, 276 marker sets) Clostridium perfringens Clostridium perfringens (3 genomes, 1152 marker genes, 185 marker sets) Clostridium sporogenes Clostridium sporogenes (2 genomes, 1302 marker genes, 242 marker sets) Clostridium symbiosum Clostridium symbiosum (2 genomes, 1222 marker genes, 322 marker sets) Clostridium thermocellum Clostridium thermocellum (5 genomes, 1325 marker genes, 239 marker sets) Comamonas testosteroni Comamonas testosteroni (3 genomes, 1563 marker genes, 349 marker sets) Corynebacterium accolens Corynebacterium accolens (2 genomes, 1192 marker genes, 206 marker sets) Corynebacterium aurimucosum Corynebacterium aurimucosum (2 genomes, 1240 marker genes, 186 marker sets) Corynebacterium diphtheriae Corynebacterium diphtheriae (15 genomes, 1041 marker genes, 134 marker sets) Corynebacterium efficiens Corynebacterium efficiens (2 genomes, 1320 marker genes, 210 marker sets) Corynebacterium glucuronolyticum Corynebacterium glucuronolyticum (3 genomes, 1217 marker genes, 176 marker sets) Corynebacterium glutamicum Corynebacterium glutamicum (6 genomes, 1184 marker genes, 228 marker sets) Corynebacterium halotolerans Corynebacterium halotolerans (2 genomes, 1353 marker genes, 183 marker sets) Corynebacterium jeikeium Corynebacterium jeikeium (2 genomes, 1143 marker genes, 157 marker sets) Corynebacterium matruchotii Corynebacterium matruchotii (2 genomes, 1191 marker genes, 181 marker sets) Corynebacterium pseudotuberculosis Corynebacterium pseudotuberculosis (14 genomes, 1001 marker genes, 123 marker sets) Corynebacterium ulcerans Corynebacterium ulcerans (3 genomes, 1221 marker genes, 112 marker sets) Corynebacterium urealyticum Corynebacterium urealyticum (2 genomes, 1146 marker genes, 117 marker sets) Coxiella burnetii Coxiella burnetii (5 genomes, 1047 marker genes, 146 marker sets) Cupriavidus metallidurans Cupriavidus metallidurans (2 genomes, 1706 marker genes, 419 marker sets) Cupriavidus necator Cupriavidus necator (2 genomes, 1517 marker genes, 379 marker sets) Cupriavidus taiwanensis Cupriavidus taiwanensis (3 genomes, 1681 marker genes, 365 marker sets) Dechloromonas agitata Dechloromonas agitata (2 genomes, 1533 marker genes, 220 marker sets) Dehalococcoides mccartyi Dehalococcoides mccartyi (4 genomes, 803 marker genes, 50 marker sets) Deinococcus radiodurans Deinococcus radiodurans (2 genomes, 1383 marker genes, 206 marker sets) Delftia acidovorans Delftia acidovorans (2 genomes, 1757 marker genes, 421 marker sets) Desulfovibrio africanus Desulfovibrio africanus (3 genomes, 1285 marker genes, 284 marker sets) Desulfovibrio alaskensis Desulfovibrio alaskensis (2 genomes, 1327 marker genes, 223 marker sets) Desulfovibrio desulfuricans Desulfovibrio desulfuricans (2 genomes, 941 marker genes, 423 marker sets) Desulfovibrio vulgaris Desulfovibrio vulgaris (3 genomes, 1187 marker genes, 344 marker sets) Dickeya dadantii Dickeya dadantii (3 genomes, 1728 marker genes, 307 marker sets) Dorea longicatena Dorea longicatena (2 genomes, 1005 marker genes, 208 marker sets) Edwardsiella tarda Edwardsiella tarda (2 genomes, 1903 marker genes, 174 marker sets) Ehrlichia ruminantium Ehrlichia ruminantium (3 genomes, 760 marker genes, 58 marker sets) Elizabethkingia anophelis Elizabethkingia anophelis (3 genomes, 1251 marker genes, 240 marker sets) Ensifer fredii Ensifer fredii (2 genomes, 1548 marker genes, 357 marker sets) Ensifer medicae Ensifer medicae (5 genomes, 1601 marker genes, 343 marker sets) Ensifer meliloti Ensifer meliloti (15 genomes, 1320 marker genes, 381 marker sets) Enterobacter aerogenes Enterobacter aerogenes (2 genomes, 2126 marker genes, 298 marker sets) Enterobacter cloacae Enterobacter cloacae (6 genomes, 1787 marker genes, 306 marker sets) Enterococcus casseliflavus Enterococcus casseliflavus (4 genomes, 1174 marker genes, 221 marker sets) Enterococcus faecalis Enterococcus faecalis (20 genomes, 792 marker genes, 298 marker sets) Enterococcus faecium Enterococcus faecium (20 genomes, 885 marker genes, 257 marker sets) Enterococcus gallinarum Enterococcus gallinarum (2 genomes, 1257 marker genes, 191 marker sets) Eremococcus coleocola Eremococcus coleocola (2 genomes, 922 marker genes, 109 marker sets) Erwinia amylovora Erwinia amylovora (3 genomes, 1878 marker genes, 177 marker sets) Erwinia pyrifoliae Erwinia pyrifoliae (2 genomes, 1942 marker genes, 184 marker sets) Escherichia coli Escherichia coli (20 genomes, 1628 marker genes, 307 marker sets) Escherichia fergusonii Escherichia fergusonii (2 genomes, 2134 marker genes, 277 marker sets) Eubacterium cellulosolvens Eubacterium cellulosolvens (2 genomes, 1078 marker genes, 198 marker sets) Eubacterium saburreum Eubacterium saburreum (2 genomes, 1186 marker genes, 223 marker sets) Exiguobacterium sibiricum Exiguobacterium sibiricum (2 genomes, 1429 marker genes, 175 marker sets) Exiguobacterium undae Exiguobacterium undae (2 genomes, 1484 marker genes, 173 marker sets) Facklamia hominis Facklamia hominis (2 genomes, 955 marker genes, 100 marker sets) Finegoldia magna Finegoldia magna (5 genomes, 878 marker genes, 111 marker sets) Francisella noatunensis Francisella noatunensis (6 genomes, 904 marker genes, 235 marker sets) Francisella noatunensis noatunensis Francisella noatunensis noatunensis (2 genomes, 1070 marker genes, 209 marker sets) Francisella novicida Francisella novicida (4 genomes, 1052 marker genes, 152 marker sets) Francisella philomiragia Francisella philomiragia (6 genomes, 1127 marker genes, 132 marker sets) Francisella tularensis Francisella tularensis (20 genomes, 850 marker genes, 176 marker sets) Fusobacterium necrophorum Fusobacterium necrophorum (2 genomes, 1080 marker genes, 117 marker sets) Fusobacterium nucleatum Fusobacterium nucleatum (6 genomes, 884 marker genes, 256 marker sets) Gallibacterium anatis Gallibacterium anatis (2 genomes, 1519 marker genes, 168 marker sets) Gardnerella vaginalis Gardnerella vaginalis (14 genomes, 621 marker genes, 237 marker sets) Gemella haemolysans Gemella haemolysans (2 genomes, 961 marker genes, 126 marker sets) Geobacillus debilis Geobacillus debilis (2 genomes, 1380 marker genes, 195 marker sets) Geobacter sulfurreducens Geobacter sulfurreducens (2 genomes, 1487 marker genes, 199 marker sets) Glaciecola agarilytica Glaciecola agarilytica (2 genomes, 1802 marker genes, 312 marker sets) Gluconacetobacter diazotrophicus Gluconacetobacter diazotrophicus (2 genomes, 1506 marker genes, 190 marker sets) Gordonia amicalis Gordonia amicalis (2 genomes, 1448 marker genes, 324 marker sets) Gordonia polyisoprenivorans Gordonia polyisoprenivorans (3 genomes, 1452 marker genes, 366 marker sets) Haemophilus ducreyi Haemophilus ducreyi (4 genomes, 1128 marker genes, 128 marker sets) Haemophilus haemolyticus Haemophilus haemolyticus (3 genomes, 1281 marker genes, 149 marker sets) Haemophilus influenzae Haemophilus influenzae (17 genomes, 924 marker genes, 157 marker sets) Haemophilus parainfluenzae Haemophilus parainfluenzae (5 genomes, 1176 marker genes, 631 marker sets) Haemophilus parasuis Haemophilus parasuis (2 genomes, 1385 marker genes, 136 marker sets) Halalkalicoccus jeotgali Halalkalicoccus jeotgali (2 genomes, 1003 marker genes, 212 marker sets) Haloarcula californiae Haloarcula californiae (2 genomes, 1047 marker genes, 260 marker sets) Haloarcula vallismortis Haloarcula vallismortis (2 genomes, 1075 marker genes, 244 marker sets) Halobiforma lacisalsi Halobiforma lacisalsi (2 genomes, 1026 marker genes, 320 marker sets) Haloferax denitrificans Haloferax denitrificans (2 genomes, 1052 marker genes, 231 marker sets) Haloferax mucosum Haloferax mucosum (2 genomes, 1030 marker genes, 193 marker sets) Haloferax sulfurifontis Haloferax sulfurifontis (2 genomes, 1054 marker genes, 237 marker sets) Haloferax volcanii Haloferax volcanii (3 genomes, 864 marker genes, 230 marker sets) Haloquadratum walsbyi Haloquadratum walsbyi (3 genomes, 798 marker genes, 192 marker sets) Helicobacter cetorum Helicobacter cetorum (2 genomes, 927 marker genes, 162 marker sets) Helicobacter pylori Helicobacter pylori (20 genomes, 773 marker genes, 143 marker sets) Histophilus somni Histophilus somni (2 genomes, 1341 marker genes, 98 marker sets) Hydrogenobacter thermophilus Hydrogenobacter thermophilus (2 genomes, 1116 marker genes, 52 marker sets) Hyphomicrobium denitrificans Hyphomicrobium denitrificans (2 genomes, 1390 marker genes, 196 marker sets) Isoptericola variabilis Isoptericola variabilis (2 genomes, 1351 marker genes, 168 marker sets) Jonquetella anthropi Jonquetella anthropi (2 genomes, 987 marker genes, 78 marker sets) Kandleria vitulina Kandleria vitulina (3 genomes, 1026 marker genes, 154 marker sets) Klebsiella oxytoca Klebsiella oxytoca (5 genomes, 1725 marker genes, 377 marker sets) Klebsiella pneumoniae Klebsiella pneumoniae (20 genomes, 1598 marker genes, 383 marker sets) Lachnobacterium bovis Lachnobacterium bovis (2 genomes, 1164 marker genes, 173 marker sets) Lachnospira multipara Lachnospira multipara (3 genomes, 1045 marker genes, 196 marker sets) Lactobacillus acidophilus Lactobacillus acidophilus (3 genomes, 800 marker genes, 127 marker sets) Lactobacillus amylovorus Lactobacillus amylovorus (2 genomes, 865 marker genes, 112 marker sets) Lactobacillus brevis Lactobacillus brevis (4 genomes, 752 marker genes, 203 marker sets) Lactobacillus buchneri Lactobacillus buchneri (5 genomes, 853 marker genes, 186 marker sets) Lactobacillus casei Lactobacillus casei (16 genomes, 772 marker genes, 222 marker sets) Lactobacillus crispatus Lactobacillus crispatus (8 genomes, 762 marker genes, 178 marker sets) Lactobacillus delbrueckii Lactobacillus delbrueckii (7 genomes, 742 marker genes, 159 marker sets) Lactobacillus fermentum Lactobacillus fermentum (3 genomes, 949 marker genes, 129 marker sets) Lactobacillus gasseri Lactobacillus gasseri (5 genomes, 692 marker genes, 131 marker sets) Lactobacillus helveticus Lactobacillus helveticus (4 genomes, 731 marker genes, 148 marker sets) Lactobacillus iners Lactobacillus iners (15 genomes, 639 marker genes, 125 marker sets) Lactobacillus jensenii Lactobacillus jensenii (5 genomes, 813 marker genes, 106 marker sets) Lactobacillus johnsonii Lactobacillus johnsonii (4 genomes, 777 marker genes, 130 marker sets) Lactobacillus paracasei Lactobacillus paracasei (3 genomes, 1022 marker genes, 225 marker sets) Lactobacillus reuteri Lactobacillus reuteri (9 genomes, 829 marker genes, 185 marker sets) Lactobacillus rhamnosus Lactobacillus rhamnosus (10 genomes, 952 marker genes, 246 marker sets) Lactobacillus ruminis Lactobacillus ruminis (2 genomes, 989 marker genes, 143 marker sets) Lactobacillus salivarius Lactobacillus salivarius (5 genomes, 864 marker genes, 162 marker sets) Lactococcus garvieae Lactococcus garvieae (4 genomes, 927 marker genes, 157 marker sets) Lactococcus lactis Lactococcus lactis (10 genomes, 856 marker genes, 190 marker sets) Laribacter hongkongensis Laribacter hongkongensis (2 genomes, 1579 marker genes, 150 marker sets) Legionella longbeachae Legionella longbeachae (2 genomes, 1434 marker genes, 256 marker sets) Legionella pneumophila Legionella pneumophila (8 genomes, 1140 marker genes, 213 marker sets) Legionella sainthelensi Legionella sainthelensi (2 genomes, 1272 marker genes, 299 marker sets) Leptospira meyeri Leptospira meyeri (2 genomes, 1272 marker genes, 278 marker sets) Leptotrichia goodfellowii Leptotrichia goodfellowii (2 genomes, 1086 marker genes, 182 marker sets) Leuconostoc citreum Leuconostoc citreum (4 genomes, 908 marker genes, 102 marker sets) Leuconostoc gelidum Leuconostoc gelidum (2 genomes, 985 marker genes, 105 marker sets) Leuconostoc kimchii Leuconostoc kimchii (2 genomes, 990 marker genes, 97 marker sets) Leuconostoc mesenteroides Leuconostoc mesenteroides (3 genomes, 870 marker genes, 110 marker sets) Listeria monocytogenes Listeria monocytogenes (20 genomes, 1262 marker genes, 179 marker sets) Loktanella vestfoldensis Loktanella vestfoldensis (2 genomes, 1360 marker genes, 189 marker sets) Lysinibacillus fusiformis Lysinibacillus fusiformis (2 genomes, 1610 marker genes, 299 marker sets) Mannheimia haemolytica Mannheimia haemolytica (3 genomes, 1446 marker genes, 156 marker sets) Mariprofundus ferrooxydans Mariprofundus ferrooxydans (2 genomes, 1329 marker genes, 184 marker sets) Megasphaera elsdenii Megasphaera elsdenii (2 genomes, 1168 marker genes, 145 marker sets) Megasphaera genomosp. Megasphaera genomosp. (2 genomes, 973 marker genes, 196 marker sets) Mesorhizobium ciceri Mesorhizobium ciceri (3 genomes, 1605 marker genes, 386 marker sets) Mesorhizobium loti Mesorhizobium loti (6 genomes, 1317 marker genes, 375 marker sets) Methanobrevibacter smithii Methanobrevibacter smithii (3 genomes, 932 marker genes, 82 marker sets) Methanococcus maripaludis Methanococcus maripaludis (4 genomes, 961 marker genes, 83 marker sets) Methylobacterium extorquens Methylobacterium extorquens (4 genomes, 1402 marker genes, 302 marker sets) Methylococcus capsulatus Methylococcus capsulatus (2 genomes, 1613 marker genes, 188 marker sets) Methylotenera mobilis Methylotenera mobilis (2 genomes, 1353 marker genes, 143 marker sets) Methylotenera versatilis Methylotenera versatilis (2 genomes, 1251 marker genes, 231 marker sets) Methyloversatilis universalis Methyloversatilis universalis (3 genomes, 1615 marker genes, 262 marker sets) Mobiluncus curtisii Mobiluncus curtisii (4 genomes, 1009 marker genes, 115 marker sets) Mobiluncus mulieris Mobiluncus mulieris (4 genomes, 980 marker genes, 165 marker sets) Moraxella catarrhalis Moraxella catarrhalis (8 genomes, 1131 marker genes, 113 marker sets) Mycobacterium abscessus Mycobacterium abscessus (20 genomes, 1230 marker genes, 333 marker sets) Mycobacterium avium Mycobacterium avium (3 genomes, 1306 marker genes, 324 marker sets) Mycobacterium bovis Mycobacterium bovis (4 genomes, 1386 marker genes, 231 marker sets) Mycobacterium canettii Mycobacterium canettii (4 genomes, 1378 marker genes, 260 marker sets) Mycobacterium gilvum Mycobacterium gilvum (2 genomes, 1474 marker genes, 320 marker sets) Mycobacterium intracellulare Mycobacterium intracellulare (3 genomes, 1375 marker genes, 278 marker sets) Mycobacterium leprae Mycobacterium leprae (2 genomes, 1053 marker genes, 195 marker sets) Mycobacterium marinum Mycobacterium marinum (2 genomes, 1415 marker genes, 358 marker sets) Mycobacterium massiliense Mycobacterium massiliense (11 genomes, 1291 marker genes, 291 marker sets) Mycobacterium rhodesiae Mycobacterium rhodesiae (2 genomes, 1202 marker genes, 411 marker sets) Mycobacterium smegmatis Mycobacterium smegmatis (2 genomes, 1151 marker genes, 407 marker sets) Mycobacterium tuberculosis Mycobacterium tuberculosis (20 genomes, 1077 marker genes, 383 marker sets) Mycoplasma agalactiae Mycoplasma agalactiae (2 genomes, 457 marker genes, 44 marker sets) Mycoplasma arginini Mycoplasma arginini (2 genomes, 361 marker genes, 170 marker sets) Mycoplasma bovis Mycoplasma bovis (3 genomes, 447 marker genes, 52 marker sets) Mycoplasma canis Mycoplasma canis (5 genomes, 460 marker genes, 37 marker sets) Mycoplasma fermentans Mycoplasma fermentans (2 genomes, 506 marker genes, 49 marker sets) Mycoplasma gallisepticum Mycoplasma gallisepticum (12 genomes, 451 marker genes, 45 marker sets) Mycoplasma genitalium Mycoplasma genitalium (2 genomes, 435 marker genes, 21 marker sets) Mycoplasma hominis Mycoplasma hominis (2 genomes, 411 marker genes, 42 marker sets) Mycoplasma hyopneumoniae Mycoplasma hyopneumoniae (3 genomes, 417 marker genes, 47 marker sets) Mycoplasma hyorhinis Mycoplasma hyorhinis (5 genomes, 427 marker genes, 49 marker sets) Mycoplasma leachii Mycoplasma leachii (2 genomes, 551 marker genes, 49 marker sets) Mycoplasma mycoides Mycoplasma mycoides (4 genomes, 476 marker genes, 64 marker sets) Mycoplasma pneumoniae Mycoplasma pneumoniae (3 genomes, 448 marker genes, 33 marker sets) Mycoplasma synoviae Mycoplasma synoviae (2 genomes, 457 marker genes, 39 marker sets) Myroides odoratimimus Myroides odoratimimus (6 genomes, 1001 marker genes, 318 marker sets) Natronobacterium gregoryi Natronobacterium gregoryi (2 genomes, 1012 marker genes, 271 marker sets) Natronorubrum tibetense Natronorubrum tibetense (2 genomes, 1039 marker genes, 332 marker sets) Neisseria flavescens Neisseria flavescens (2 genomes, 1305 marker genes, 164 marker sets) Neisseria gonorrhoeae Neisseria gonorrhoeae (14 genomes, 1201 marker genes, 205 marker sets) Neisseria meningitidis Neisseria meningitidis (20 genomes, 997 marker genes, 216 marker sets) Novosphingobium nitrogenifigens Novosphingobium nitrogenifigens (2 genomes, 1642 marker genes, 232 marker sets) Oceanicaulis alexandrii Oceanicaulis alexandrii (2 genomes, 1398 marker genes, 175 marker sets) Ochrobactrum intermedium Ochrobactrum intermedium (2 genomes, 1521 marker genes, 251 marker sets) Oenococcus oeni Oenococcus oeni (12 genomes, 770 marker genes, 112 marker sets) Oligotropha carboxidovorans Oligotropha carboxidovorans (2 genomes, 1592 marker genes, 192 marker sets) Orientia tsutsugamushi Orientia tsutsugamushi (2 genomes, 651 marker genes, 94 marker sets) Ornithobacterium rhinotracheale Ornithobacterium rhinotracheale (2 genomes, 1172 marker genes, 138 marker sets) Oxalobacter formigenes Oxalobacter formigenes (2 genomes, 1179 marker genes, 133 marker sets) Paenibacillus alvei Paenibacillus alvei (3 genomes, 1429 marker genes, 356 marker sets) Paenibacillus mucilaginosus Paenibacillus mucilaginosus (2 genomes, 1584 marker genes, 433 marker sets) Pantoea ananatis Pantoea ananatis (4 genomes, 1893 marker genes, 263 marker sets) Parabacteroides merdae Parabacteroides merdae (3 genomes, 1201 marker genes, 260 marker sets) Parachlamydia acanthamoebae Parachlamydia acanthamoebae (2 genomes, 1064 marker genes, 203 marker sets) Parascardovia denticolens Parascardovia denticolens (2 genomes, 908 marker genes, 87 marker sets) Pasteurella multocida Pasteurella multocida (5 genomes, 1400 marker genes, 149 marker sets) Pectobacterium carotovorum Pectobacterium carotovorum (2 genomes, 1949 marker genes, 285 marker sets) Pediococcus acidilactici Pediococcus acidilactici (4 genomes, 836 marker genes, 109 marker sets) Pediococcus pentosaceus Pediococcus pentosaceus (2 genomes, 936 marker genes, 98 marker sets) Pelosinus fermentans Pelosinus fermentans (2 genomes, 1545 marker genes, 299 marker sets) Peptoniphilus lacrimalis Peptoniphilus lacrimalis (2 genomes, 937 marker genes, 98 marker sets) Peptostreptococcus anaerobius Peptostreptococcus anaerobius (2 genomes, 1024 marker genes, 136 marker sets) Persephonella lauensis Persephonella lauensis (2 genomes, 1194 marker genes, 108 marker sets) Phaeobacter gallaeciensis Phaeobacter gallaeciensis (4 genomes, 1371 marker genes, 329 marker sets) Photobacterium profundum Photobacterium profundum (2 genomes, 1714 marker genes, 406 marker sets) Polynucleobacter necessarius Polynucleobacter necessarius (3 genomes, 968 marker genes, 106 marker sets) Porphyromonas asaccharolytica Porphyromonas asaccharolytica (2 genomes, 1014 marker genes, 131 marker sets) Porphyromonas gingivalis Porphyromonas gingivalis (8 genomes, 974 marker genes, 194 marker sets) Prevotella amnii Prevotella amnii (2 genomes, 985 marker genes, 155 marker sets) Prevotella bivia Prevotella bivia (2 genomes, 1077 marker genes, 150 marker sets) Prevotella brevis Prevotella brevis (2 genomes, 1125 marker genes, 185 marker sets) Prevotella buccae Prevotella buccae (2 genomes, 1106 marker genes, 220 marker sets) Prevotella dentalis Prevotella dentalis (2 genomes, 1171 marker genes, 188 marker sets) Prevotella denticola Prevotella denticola (3 genomes, 1015 marker genes, 186 marker sets) Prevotella intermedia Prevotella intermedia (2 genomes, 1108 marker genes, 149 marker sets) Prevotella maculosa Prevotella maculosa (2 genomes, 1057 marker genes, 211 marker sets) Prevotella melaninogenica Prevotella melaninogenica (2 genomes, 1039 marker genes, 225 marker sets) Prevotella micans Prevotella micans (2 genomes, 1048 marker genes, 165 marker sets) Prevotella oralis Prevotella oralis (2 genomes, 1159 marker genes, 165 marker sets) Prevotella oris Prevotella oris (3 genomes, 1006 marker genes, 202 marker sets) Prevotella ruminicola Prevotella ruminicola (2 genomes, 1088 marker genes, 224 marker sets) Prevotella timonensis Prevotella timonensis (2 genomes, 983 marker genes, 206 marker sets) Prevotella veroralis Prevotella veroralis (2 genomes, 986 marker genes, 200 marker sets) Prochlorococcus marinus Prochlorococcus marinus (13 genomes, 862 marker genes, 183 marker sets) Propionibacterium acidifaciens Propionibacterium acidifaciens (2 genomes, 539 marker genes, 376 marker sets) Propionibacterium acidipropionici Propionibacterium acidipropionici (2 genomes, 1277 marker genes, 233 marker sets) Propionibacterium acnes Propionibacterium acnes (20 genomes, 1053 marker genes, 218 marker sets) Propionibacterium avidum Propionibacterium avidum (2 genomes, 1195 marker genes, 150 marker sets) Propionimicrobium lymphophilum Propionimicrobium lymphophilum (2 genomes, 1112 marker genes, 105 marker sets) Proteus mirabilis Proteus mirabilis (2 genomes, 1888 marker genes, 231 marker sets) Providencia alcalifaciens Providencia alcalifaciens (2 genomes, 1875 marker genes, 218 marker sets) Providencia stuartii Providencia stuartii (2 genomes, 1918 marker genes, 220 marker sets) Pseudoalteromonas haloplanktis Pseudoalteromonas haloplanktis (2 genomes, 1596 marker genes, 348 marker sets) Pseudoalteromonas luteoviolacea Pseudoalteromonas luteoviolacea (2 genomes, 1493 marker genes, 389 marker sets) Pseudoalteromonas piscicida Pseudoalteromonas piscicida (2 genomes, 1903 marker genes, 366 marker sets) Pseudobutyrivibrio ruminis Pseudobutyrivibrio ruminis (3 genomes, 937 marker genes, 238 marker sets) Pseudomonas aeruginosa Pseudomonas aeruginosa (19 genomes, 1617 marker genes, 469 marker sets) Pseudomonas brassicacearum Pseudomonas brassicacearum (2 genomes, 1982 marker genes, 393 marker sets) Pseudomonas chlororaphis Pseudomonas chlororaphis (2 genomes, 1904 marker genes, 402 marker sets) Pseudomonas fluorescens Pseudomonas fluorescens (9 genomes, 1154 marker genes, 347 marker sets) Pseudomonas fulva Pseudomonas fulva (2 genomes, 1488 marker genes, 484 marker sets) Pseudomonas mendocina Pseudomonas mendocina (3 genomes, 1635 marker genes, 338 marker sets) Pseudomonas monteilii Pseudomonas monteilii (3 genomes, 1761 marker genes, 372 marker sets) Pseudomonas putida Pseudomonas putida (13 genomes, 1246 marker genes, 410 marker sets) Pseudomonas stutzeri Pseudomonas stutzeri (13 genomes, 1189 marker genes, 403 marker sets) Pseudomonas syringae Pseudomonas syringae (20 genomes, 1439 marker genes, 395 marker sets) Pseudomonas thermotolerans Pseudomonas thermotolerans (2 genomes, 1731 marker genes, 219 marker sets) Pseudomonas umsongensis Pseudomonas umsongensis (2 genomes, 1945 marker genes, 378 marker sets) Pseudomonas viridiflava Pseudomonas viridiflava (3 genomes, 1876 marker genes, 420 marker sets) Pseudoxanthomonas suwonensis Pseudoxanthomonas suwonensis (3 genomes, 1424 marker genes, 280 marker sets) Pyrococcus furiosus Pyrococcus furiosus (2 genomes, 981 marker genes, 99 marker sets) Ralstonia pickettii Ralstonia pickettii (2 genomes, 1715 marker genes, 287 marker sets) Ralstonia solanacearum Ralstonia solanacearum (4 genomes, 1543 marker genes, 320 marker sets) Rhizobium etli Rhizobium etli (2 genomes, 1571 marker genes, 331 marker sets) Rhizobium leguminosarum Rhizobium leguminosarum (20 genomes, 1104 marker genes, 354 marker sets) Rhodobacter sphaeroides Rhodobacter sphaeroides (5 genomes, 1409 marker genes, 281 marker sets) Rhodococcus equi Rhodococcus equi (2 genomes, 1456 marker genes, 325 marker sets) Rhodococcus erythropolis Rhodococcus erythropolis (2 genomes, 1456 marker genes, 402 marker sets) Rhodococcus pyridinivorans Rhodococcus pyridinivorans (2 genomes, 1329 marker genes, 319 marker sets) Rhodonellum psychrophilum Rhodonellum psychrophilum (2 genomes, 1473 marker genes, 372 marker sets) Rhodopseudomonas palustris Rhodopseudomonas palustris (7 genomes, 1180 marker genes, 388 marker sets) Rhodospirillum rubrum Rhodospirillum rubrum (2 genomes, 1731 marker genes, 250 marker sets) Rhodothermus marinus Rhodothermus marinus (3 genomes, 1379 marker genes, 216 marker sets) Rickettsia canadensis Rickettsia canadensis (2 genomes, 783 marker genes, 35 marker sets) Rickettsia massiliae Rickettsia massiliae (2 genomes, 794 marker genes, 67 marker sets) Rickettsia prowazekii Rickettsia prowazekii (5 genomes, 753 marker genes, 44 marker sets) Rickettsia rickettsii Rickettsia rickettsii (14 genomes, 737 marker genes, 72 marker sets) Rickettsia slovaca Rickettsia slovaca (2 genomes, 807 marker genes, 50 marker sets) Rickettsia typhi Rickettsia typhi (3 genomes, 786 marker genes, 24 marker sets) Riemerella anatipestifer Riemerella anatipestifer (5 genomes, 999 marker genes, 139 marker sets) Rothia dentocariosa Rothia dentocariosa (2 genomes, 1057 marker genes, 145 marker sets) Rothia mucilaginosa Rothia mucilaginosa (3 genomes, 990 marker genes, 143 marker sets) Rubrivivax benzoatilyticus Rubrivivax benzoatilyticus (2 genomes, 1846 marker genes, 310 marker sets) Ruminococcus albus Ruminococcus albus (2 genomes, 1187 marker genes, 284 marker sets) Ruminococcus flavefaciens Ruminococcus flavefaciens (5 genomes, 783 marker genes, 287 marker sets) Ruminococcus gnavus Ruminococcus gnavus (2 genomes, 1114 marker genes, 199 marker sets) Saccharomonospora azurea Saccharomonospora azurea (2 genomes, 1323 marker genes, 314 marker sets) Salinispora arenicola Salinispora arenicola (20 genomes, 1171 marker genes, 326 marker sets) Salinispora pacifica Salinispora pacifica (20 genomes, 1005 marker genes, 278 marker sets) Salinispora tropica Salinispora tropica (5 genomes, 1307 marker genes, 311 marker sets) Salmonella enterica Salmonella enterica (20 genomes, 1643 marker genes, 283 marker sets) Saprospira grandis Saprospira grandis (2 genomes, 1147 marker genes, 326 marker sets) Selenomonas artemidis Selenomonas artemidis (2 genomes, 1227 marker genes, 134 marker sets) Selenomonas bovis Selenomonas bovis (2 genomes, 1210 marker genes, 191 marker sets) Selenomonas ruminantium Selenomonas ruminantium (4 genomes, 1010 marker genes, 375 marker sets) Selenomonas sputigena Selenomonas sputigena (2 genomes, 1404 marker genes, 138 marker sets) Serratia marcescens Serratia marcescens (2 genomes, 1727 marker genes, 324 marker sets) Serratia plymuthica Serratia plymuthica (5 genomes, 1990 marker genes, 304 marker sets) Serratia proteamaculans Serratia proteamaculans (2 genomes, 2115 marker genes, 304 marker sets) Shewanella baltica Shewanella baltica (8 genomes, 1677 marker genes, 338 marker sets) Shigella boydii Shigella boydii (6 genomes, 1605 marker genes, 348 marker sets) Shigella dysenteriae Shigella dysenteriae (4 genomes, 1643 marker genes, 335 marker sets) Shigella flexneri Shigella flexneri (18 genomes, 1512 marker genes, 333 marker sets) Shigella sonnei Shigella sonnei (5 genomes, 1936 marker genes, 302 marker sets) Solobacterium moorei Solobacterium moorei (2 genomes, 877 marker genes, 170 marker sets) Sphingomonas melonis Sphingomonas melonis (3 genomes, 1562 marker genes, 203 marker sets) Sphingomonas phyllosphaerae Sphingomonas phyllosphaerae (2 genomes, 1437 marker genes, 248 marker sets) Spirochaeta thermophila Spirochaeta thermophila (2 genomes, 1122 marker genes, 152 marker sets) Staphylococcus aureus Staphylococcus aureus (20 genomes, 1169 marker genes, 170 marker sets) Staphylococcus epidermidis Staphylococcus epidermidis (20 genomes, 933 marker genes, 208 marker sets) Staphylococcus hominis Staphylococcus hominis (2 genomes, 1209 marker genes, 107 marker sets) Staphylococcus lugdunensis Staphylococcus lugdunensis (3 genomes, 1270 marker genes, 131 marker sets) Staphylococcus pseudintermedius Staphylococcus pseudintermedius (2 genomes, 1324 marker genes, 134 marker sets) Stenotrophomonas maltophilia Stenotrophomonas maltophilia (8 genomes, 1441 marker genes, 396 marker sets) Streptococcus agalactiae Streptococcus agalactiae (20 genomes, 807 marker genes, 204 marker sets) Streptococcus anginosus Streptococcus anginosus (5 genomes, 990 marker genes, 160 marker sets) Streptococcus australis Streptococcus australis (2 genomes, 1197 marker genes, 124 marker sets) Streptococcus bovis Streptococcus bovis (5 genomes, 976 marker genes, 140 marker sets) Streptococcus dysgalactiae Streptococcus dysgalactiae (5 genomes, 982 marker genes, 204 marker sets) Streptococcus equi Streptococcus equi (4 genomes, 961 marker genes, 136 marker sets) Streptococcus gallolyticus Streptococcus gallolyticus (3 genomes, 1151 marker genes, 131 marker sets) Streptococcus infantarius Streptococcus infantarius (2 genomes, 1097 marker genes, 118 marker sets) Streptococcus infantis Streptococcus infantis (4 genomes, 971 marker genes, 131 marker sets) Streptococcus intermedius Streptococcus intermedius (3 genomes, 1049 marker genes, 115 marker sets) Streptococcus mitis Streptococcus mitis (11 genomes, 743 marker genes, 256 marker sets) Streptococcus mutans Streptococcus mutans (8 genomes, 1053 marker genes, 121 marker sets) Streptococcus oralis Streptococcus oralis (9 genomes, 871 marker genes, 196 marker sets) Streptococcus parasanguinis Streptococcus parasanguinis (6 genomes, 999 marker genes, 203 marker sets) Streptococcus parauberis Streptococcus parauberis (3 genomes, 969 marker genes, 126 marker sets) Streptococcus pneumoniae Streptococcus pneumoniae (20 genomes, 845 marker genes, 160 marker sets) Streptococcus pseudopneumoniae Streptococcus pseudopneumoniae (3 genomes, 1102 marker genes, 236 marker sets) Streptococcus pseudoporcinus Streptococcus pseudoporcinus (2 genomes, 1166 marker genes, 114 marker sets) Streptococcus pyogenes Streptococcus pyogenes (20 genomes, 885 marker genes, 150 marker sets) Streptococcus salivarius Streptococcus salivarius (4 genomes, 1021 marker genes, 130 marker sets) Streptococcus sanguinis Streptococcus sanguinis (13 genomes, 877 marker genes, 335 marker sets) Streptococcus suis Streptococcus suis (14 genomes, 852 marker genes, 161 marker sets) Streptococcus thermophilus Streptococcus thermophilus (6 genomes, 971 marker genes, 96 marker sets) Streptococcus urinalis Streptococcus urinalis (2 genomes, 1107 marker genes, 100 marker sets) Streptomyces cattleya Streptomyces cattleya (3 genomes, 1460 marker genes, 495 marker sets) Sulfobacillus acidophilus Sulfobacillus acidophilus (2 genomes, 1273 marker genes, 192 marker sets) Sulfolobus acidocaldarius Sulfolobus acidocaldarius (3 genomes, 819 marker genes, 115 marker sets) Sulfolobus islandicus Sulfolobus islandicus (9 genomes, 778 marker genes, 149 marker sets) Sulfolobus solfataricus Sulfolobus solfataricus (2 genomes, 822 marker genes, 116 marker sets) Sutterella wadsworthensis Sutterella wadsworthensis (3 genomes, 935 marker genes, 232 marker sets) Synechococcus elongatus Synechococcus elongatus (2 genomes, 1468 marker genes, 121 marker sets) Taylorella asinigenitalis Taylorella asinigenitalis (2 genomes, 1125 marker genes, 58 marker sets) Taylorella equigenitalis Taylorella equigenitalis (2 genomes, 1154 marker genes, 53 marker sets) Teredinibacter turnerae Teredinibacter turnerae (8 genomes, 1640 marker genes, 312 marker sets) Thauera linaloolentis Thauera linaloolentis (2 genomes, 1773 marker genes, 294 marker sets) Thermacetogenium phaeum Thermacetogenium phaeum (2 genomes, 1344 marker genes, 157 marker sets) Thermoanaerobacterium thermosaccharolyticum Thermoanaerobacterium thermosaccharolyticum (2 genomes, 1317 marker genes, 136 marker sets) Thermobifida fusca Thermobifida fusca (2 genomes, 1421 marker genes, 225 marker sets) Thermus oshimai Thermus oshimai (2 genomes, 1196 marker genes, 112 marker sets) Thermus scotoductus Thermus scotoductus (2 genomes, 1098 marker genes, 162 marker sets) Thermus thermophilus Thermus thermophilus (4 genomes, 1100 marker genes, 123 marker sets) Thioalkalivibrio thiocyanoxidans Thioalkalivibrio thiocyanoxidans (2 genomes, 1159 marker genes, 330 marker sets) Thiobacillus denitrificans Thiobacillus denitrificans (2 genomes, 1290 marker genes, 203 marker sets) Treponema denticola Treponema denticola (9 genomes, 954 marker genes, 221 marker sets) Treponema pallidum Treponema pallidum (3 genomes, 717 marker genes, 44 marker sets) Treponema vincentii Treponema vincentii (2 genomes, 946 marker genes, 178 marker sets) Ureaplasma parvum Ureaplasma parvum (5 genomes, 420 marker genes, 35 marker sets) Ureaplasma urealyticum Ureaplasma urealyticum (10 genomes, 386 marker genes, 50 marker sets) Variovorax paradoxus Variovorax paradoxus (5 genomes, 1314 marker genes, 368 marker sets) Veillonella atypica Veillonella atypica (3 genomes, 1145 marker genes, 136 marker sets) Veillonella parvula Veillonella parvula (2 genomes, 1174 marker genes, 97 marker sets) Vibrio alginolyticus Vibrio alginolyticus (5 genomes, 1283 marker genes, 392 marker sets) Vibrio cholerae Vibrio cholerae (20 genomes, 1729 marker genes, 348 marker sets) Vibrio fischeri Vibrio fischeri (2 genomes, 1814 marker genes, 227 marker sets) Vibrio harveyi Vibrio harveyi (3 genomes, 1674 marker genes, 373 marker sets) Vibrio mimicus Vibrio mimicus (2 genomes, 1752 marker genes, 276 marker sets) Vibrio parahaemolyticus Vibrio parahaemolyticus (12 genomes, 1733 marker genes, 363 marker sets) Vibrio splendidus Vibrio splendidus (2 genomes, 1757 marker genes, 310 marker sets) Vibrio vulnificus Vibrio vulnificus (5 genomes, 1802 marker genes, 386 marker sets) Wigglesworthia glossinidia Wigglesworthia glossinidia (2 genomes, 679 marker genes, 9 marker sets) Wohlfahrtiimonas chitiniclastica Wohlfahrtiimonas chitiniclastica (2 genomes, 1335 marker genes, 78 marker sets) Wolbachia endosymbiont of Culex quinquefasciatus Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 747 marker genes, 56 marker sets) Xanthomonas axonopodis Xanthomonas axonopodis (5 genomes, 1627 marker genes, 365 marker sets) Xanthomonas campestris Xanthomonas campestris (5 genomes, 1623 marker genes, 336 marker sets) Xanthomonas oryzae Xanthomonas oryzae (3 genomes, 1627 marker genes, 339 marker sets) Xylella fastidiosa Xylella fastidiosa (10 genomes, 1207 marker genes, 178 marker sets) Yersinia enterocolitica Yersinia enterocolitica (5 genomes, 1868 marker genes, 316 marker sets) Yersinia pestis Yersinia pestis (20 genomes, 1683 marker genes, 330 marker sets) Yersinia pseudotuberculosis Yersinia pseudotuberculosis (4 genomes, 1975 marker genes, 263 marker sets) Zymomonas mobilis Zymomonas mobilis (3 genomes, 1142 marker genes, 133 marker sets)