Mercurial > repos > iuc > checkm_tree
view macros.xml @ 5:d030ce59f075 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit ea21e425f6a04a586626c4a6d848aed1d1261b30
| author | iuc |
|---|---|
| date | Sat, 16 Aug 2025 10:22:33 +0000 |
| parents | 626ab1058170 |
| children |
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<?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.2.4</token> <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">24.0</token> <xml name="biotools"> <xrefs> <xref type="bio.tools">checkm</xref> </xrefs> </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">checkm-genome</requirement> <yield/> </requirements> </xml> <xml name="bin_inputs"> <conditional name="bins"> <param name="select" type="select" label="Data structure for bins"> <option value="collection">In collection</option> <option value="individual">In individual datasets</option> </param> <when value="collection"> <param name="bins_coll" type="data_collection" collection_type="list" format="fasta" label="Bins"/> </when> <when value="individual"> <param name="bins_ind" type="data" format="fasta" multiple="true" label="Bins"/> </when> </conditional> </xml> <token name="@BIN_INPUTS@"><![CDATA[ #import re mkdir 'bins' && #if $bins.select == 'collection' #for $b in $bins.bins_coll #set $identifier = re.sub('[^\s\w\-\\.]', '_', str($b.element_identifier)) ln -s '$b.file_name' 'bins/${identifier}.fasta' && #end for #else #for $b in $bins.bins_ind #set $identifier = re.sub('[^\s\w\-\\.]', '_', str($b.element_identifier)) ln -s '$b.file_name' 'bins/${identifier}.fasta' && #end for #end if ]]></token> <xml name="ali"> <param argument="--ali" type="boolean" truevalue="--ali" falsevalue="" checked="false" label="Generate HMMER alignment file for each bin?" /> </xml> <xml name="nt"> <param argument="--nt" type="boolean" truevalue="--nt" falsevalue="" checked="false" label="Generate nucleotide gene sequences for each bin?" /> </xml> <xml name="genes"> <param argument="--genes" type="boolean" truevalue="--genes" falsevalue="" checked="false" label="Bins contain genes as amino acids instead of nucleotide contigs?" /> </xml> <xml name="tree_params"> <param argument="--reduced_tree" type="boolean" truevalue="--reduced_tree" falsevalue="" checked="false" label="Use reduced tree for determining lineage of each bin?" help="This option requires less than 16GB of memory"/> <expand macro="ali" /> <expand macro="nt" /> <expand macro="genes" /> </xml> <xml name="tree_extra_output_options"> <option value="hmmer_tree_ali">Phylogenetic HMMER alignment file for each bin</option> <option value="concatenate_pplacer_json">Concatenated pplacer JSON</option> <option value="genes_fna">Nucleotide gene sequences for each bin (if generate nucleotide gene sequences)</option> <option value="genes_faa">Protein gene sequences for each bin</option> <option value="genes_gff">Gene feature files for each bin (if bins do not contain genes as amino acids instead of nucleotide contigs)</option> </xml> <xml name="analyze_params"> <expand macro="ali" /> <expand macro="nt" /> <expand macro="genes" /> </xml> <xml name="analyze_extra_output_options"> <option value="hmmer_analyze_ali">Marker HMMER alignment file for each bin</option> </xml> <xml name="hmm_marker_stats_inputs"> <param name="phylo_hmm_info" type="data" format="zip" label="Phylogenetic HMM model info for each bin" help="Output of the CheckM tree tool"/> <param name="bin_stats_tree" type="data" format="tabular" label="Phylogenetic bin stats" help="Output of the CheckM tree tool" /> <param name="hmmer_tree" type="data_collection" collection_type="list" format="txt" label="Phylogenetic HMM hits to each bin" help="Output of the CheckM tree tool" /> </xml> <token name="@HMM_MARKER_STATS_INPUTS@"><![CDATA[ #import re mkdir -p 'inputs/storage/' && ln -s '$phylo_hmm_info' 'inputs/storage/phylo_hmm_info.pkl.gz' && ln -s '$bin_stats_tree' 'inputs/storage/bin_stats.tree.tsv' && #for $i in $hmmer_tree #set $identifier = re.sub('[^\s\w\-\\.]', '_', str($i.element_identifier)) mkdir -p 'inputs/bins/${identifier}' && ln -s '$i' 'inputs/bins/${identifier}/hmmer.tree.txt' && #end for ]]></token> <xml name="lineage_set_params"> <param argument="--unique" type="integer" min="0" value="10" label="Minimum number of unique phylogenetic markers required to use lineage-specific marker set" /> <param argument="--multi" type="integer" min="0" value="10" label="Maximum number of multi-copy phylogenetic markers before defaulting to domain-level marker set " /> <param argument="--force_domain" type="boolean" truevalue="--force_domain" falsevalue="" checked="false" label="Use domain-level sets for all bins?" /> <param argument="--no_refinement" type="boolean" truevalue="--no_refinement" falsevalue="" checked="false" label="Do not perform lineage-specific marker set refinement?" /> </xml> <xml name="marker_file"> <param name="marker_file" type="data" format="tabular" label="Marker for assessing bins" help="Each marker to exclude should be listed on a separate line of the file. Output of the CheckM lineage_set or taxon_set tools"/> </xml> <xml name="marker_output"> <data name="marker" format="tabular" label="${tool.name} on ${on_string}: Marker genes"/> </xml> <xml name="qa_params"> <param argument="--individual_markers" type="boolean" truevalue="--individual_markers" falsevalue="" checked="false" label="Treat marker as independent?" help="It will ignore co-located set structure"/> <param argument="--skip_adj_correction" type="boolean" truevalue="--skip_adj_correction" falsevalue="" checked="false" label="Do not exclude adjacent marker genes when estimating contamination?"/> <param argument="--skip_pseudogene_correction" type="boolean" truevalue="--skip_pseudogene_correction" falsevalue="" checked="false" label="Skip identification and filtering of pseudogenes?"/> <param argument="--aai_strain" type="float" min="0" max="1" value="0.9" label="AAI threshold used to identify strain heterogeneity"/> <param argument="--ignore_thresholds" type="boolean" truevalue="--ignore_thresholds" falsevalue="" checked="false" label="Ignore model-specific score thresholds?"/> <param argument="--e_value" type="float" min="0" max="1" value="1e-10" label="E-value cut off"/> <param argument="--length" type="float" min="0" max="1" value="0.7" label="Percent overlap between target and query"/> </xml> <xml name="qa_extra_output_options"> <!--<option value="alignment_file">Alignment of multi-copy genes and their AAI identity</option>--> <option value="marker_gene_stats">Marker gene stats</option> </xml> <xml name="qa_extra_outputs"> <!--<data name="alignment_file" format="tabular" label="${tool.name} on ${on_string}: Alignment of multi-copy genes and their AAI identity" > <filter>'alignment_file' in extra_outputs</filter> </data>--> <data name="marker_gene_stats" format="tabular" from_work_dir="output/storage/marker_gene_stats.tsv" label="${tool.name} on ${on_string}: Marker gene statistics"> <filter>extra_outputs and 'marker_gene_stats' in extra_outputs</filter> </data> </xml> <xml name="rank_taxon"> <conditional name="rank_taxon"> <param argument="--rank" type="select" label="Taxonomic rank"> <option value="life">Life</option> <option value="domain">Domain</option> <option value="phylum">Phylum</option> <option value="order">Order</option> <option value="family">Family</option> <option value="genus">Genus</option> <option value="species">Species</option> </param> <when value="life"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Prokaryote">Prokaryote (5656 genomes, 56 marker genes, 24 marker sets)</option> </param> </when> <when value="domain"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Archaea">Archaea (207 genomes, 149 marker genes, 107 marker sets)</option> <option value="Bacteria">Bacteria (5449 genomes, 104 marker genes, 58 marker sets)</option> </param> </when> <when value="phylum"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Acidobacteria">Acidobacteria (15 genomes, 399 marker genes, 276 marker sets)</option> <option value="Actinobacteria">Actinobacteria (731 genomes, 204 marker genes, 119 marker sets)</option> <option value="Aquificae">Aquificae (18 genomes, 486 marker genes, 369 marker sets)</option> <option value="Bacteroidetes">Bacteroidetes (419 genomes, 286 marker genes, 195 marker sets)</option> <option value="Chlamydiae">Chlamydiae (64 genomes, 455 marker genes, 185 marker sets)</option> <option value="Chlorobi">Chlorobi (12 genomes, 612 marker genes, 333 marker sets)</option> <option value="Chloroflexi">Chloroflexi (20 genomes, 225 marker genes, 149 marker sets)</option> <option value="Crenarchaeota">Crenarchaeota (54 genomes, 217 marker genes, 168 marker sets)</option> <option value="Cyanobacteria">Cyanobacteria (129 genomes, 472 marker genes, 368 marker sets)</option> <option value="Deferribacteres">Deferribacteres (6 genomes, 564 marker genes, 339 marker sets)</option> <option value="Deinococcus-Thermus">Deinococcus-Thermus (40 genomes, 528 marker genes, 359 marker sets)</option> <option value="Dictyoglomi">Dictyoglomi (2 genomes, 1060 marker genes, 103 marker sets)</option> <option value="Euryarchaeota">Euryarchaeota (146 genomes, 188 marker genes, 125 marker sets)</option> <option value="Firmicutes">Firmicutes (1349 genomes, 172 marker genes, 99 marker sets)</option> <option value="Fusobacteria">Fusobacteria (32 genomes, 289 marker genes, 159 marker sets)</option> <option value="Ignavibacteriae">Ignavibacteriae (2 genomes, 1003 marker genes, 383 marker sets)</option> <option value="Nitrospirae">Nitrospirae (4 genomes, 676 marker genes, 379 marker sets)</option> <option value="Planctomycetes">Planctomycetes (11 genomes, 360 marker genes, 256 marker sets)</option> <option value="Proteobacteria">Proteobacteria (2343 genomes, 182 marker genes, 119 marker sets)</option> <option value="Spirochaetes">Spirochaetes (71 genomes, 218 marker genes, 127 marker sets)</option> <option value="Synergistetes">Synergistetes (13 genomes, 452 marker genes, 160 marker sets)</option> <option value="Tenericutes">Tenericutes (119 genomes, 177 marker genes, 105 marker sets)</option> <option value="Thaumarchaeota">Thaumarchaeota (4 genomes, 548 marker genes, 265 marker sets)</option> <option value="Thermodesulfobacteria">Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets)</option> <option value="Thermotogae">Thermotogae (14 genomes, 460 marker genes, 267 marker sets)</option> <option value="Verrucomicrobia">Verrucomicrobia (12 genomes, 346 marker genes, 245 marker sets)</option> </param> </when> <when value="order"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Acholeplasmatales">Acholeplasmatales (12 genomes, 176 marker genes, 88 marker sets)</option> <option value="Acidilobales">Acidilobales (3 genomes, 558 marker genes, 236 marker sets)</option> <option value="Acidithiobacillales">Acidithiobacillales (6 genomes, 795 marker genes, 254 marker sets)</option> <option value="Acidobacteriales">Acidobacteriales (10 genomes, 572 marker genes, 395 marker sets)</option> <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> <option value="Actinomycetales">Actinomycetales (620 genomes, 256 marker genes, 152 marker sets)</option> <option value="Aeromonadales">Aeromonadales (23 genomes, 456 marker genes, 237 marker sets)</option> <option value="Alteromonadales">Alteromonadales (116 genomes, 519 marker genes, 267 marker sets)</option> <option value="Aquificales">Aquificales (18 genomes, 486 marker genes, 369 marker sets)</option> <option value="Archaeoglobales">Archaeoglobales (5 genomes, 619 marker genes, 392 marker sets)</option> <option value="Bacillales">Bacillales (331 genomes, 319 marker genes, 134 marker sets)</option> <option value="Bacteroidales">Bacteroidales (210 genomes, 402 marker genes, 267 marker sets)</option> <option value="Bacteroidetes Order II. Incertae sedis">Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets)</option> <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> <option value="Bdellovibrionales">Bdellovibrionales (5 genomes, 466 marker genes, 290 marker sets)</option> <option value="Bifidobacteriales">Bifidobacteriales (77 genomes, 464 marker genes, 220 marker sets)</option> <option value="Burkholderiales">Burkholderiales (194 genomes, 427 marker genes, 216 marker sets)</option> <option value="Campylobacterales">Campylobacterales (107 genomes, 458 marker genes, 273 marker sets)</option> <option value="Cardiobacteriales">Cardiobacteriales (3 genomes, 807 marker genes, 349 marker sets)</option> <option value="Caulobacterales">Caulobacterales (15 genomes, 644 marker genes, 366 marker sets)</option> <option value="Chlamydiales">Chlamydiales (64 genomes, 455 marker genes, 185 marker sets)</option> <option value="Chlorobiales">Chlorobiales (12 genomes, 612 marker genes, 333 marker sets)</option> <option value="Chloroflexales">Chloroflexales (8 genomes, 501 marker genes, 342 marker sets)</option> <option value="Chromatiales">Chromatiales (92 genomes, 595 marker genes, 283 marker sets)</option> <option value="Chroococcales">Chroococcales (55 genomes, 490 marker genes, 378 marker sets)</option> <option value="Clostridiales">Clostridiales (395 genomes, 202 marker genes, 114 marker sets)</option> <option value="Coriobacteriales">Coriobacteriales (23 genomes, 304 marker genes, 155 marker sets)</option> <option value="Cytophagales">Cytophagales (48 genomes, 438 marker genes, 328 marker sets)</option> <option value="Deferribacterales">Deferribacterales (6 genomes, 564 marker genes, 339 marker sets)</option> <option value="Dehalococcoidales">Dehalococcoidales (5 genomes, 755 marker genes, 54 marker sets)</option> <option value="Deinococcales">Deinococcales (17 genomes, 563 marker genes, 388 marker sets)</option> <option value="Desulfobacterales">Desulfobacterales (20 genomes, 320 marker genes, 189 marker sets)</option> <option value="Desulfovibrionales">Desulfovibrionales (40 genomes, 454 marker genes, 252 marker sets)</option> <option value="Desulfurellales">Desulfurellales (4 genomes, 817 marker genes, 252 marker sets)</option> <option value="Desulfurococcales">Desulfurococcales (14 genomes, 287 marker genes, 213 marker sets)</option> <option value="Desulfuromonadales">Desulfuromonadales (13 genomes, 550 marker genes, 283 marker sets)</option> <option value="Dictyoglomales">Dictyoglomales (2 genomes, 1060 marker genes, 103 marker sets)</option> <option value="Enterobacteriales">Enterobacteriales (262 genomes, 297 marker genes, 121 marker sets)</option> <option value="Entomoplasmatales">Entomoplasmatales (9 genomes, 362 marker genes, 151 marker sets)</option> <option value="Erysipelotrichales">Erysipelotrichales (18 genomes, 301 marker genes, 159 marker sets)</option> <option value="Flavobacteriales">Flavobacteriales (126 genomes, 321 marker genes, 202 marker sets)</option> <option value="Fusobacteriales">Fusobacteriales (32 genomes, 289 marker genes, 159 marker sets)</option> <option value="Halanaerobiales">Halanaerobiales (7 genomes, 504 marker genes, 189 marker sets)</option> <option value="Halobacteriales">Halobacteriales (59 genomes, 367 marker genes, 241 marker sets)</option> <option value="Holophagales">Holophagales (2 genomes, 883 marker genes, 459 marker sets)</option> <option value="Hydrogenophilales">Hydrogenophilales (3 genomes, 1205 marker genes, 209 marker sets)</option> <option value="Ignavibacteriales">Ignavibacteriales (2 genomes, 1003 marker genes, 383 marker sets)</option> <option value="Lactobacillales">Lactobacillales (490 genomes, 335 marker genes, 183 marker sets)</option> <option value="Legionellales">Legionellales (23 genomes, 545 marker genes, 269 marker sets)</option> <option value="Mariprofundales">Mariprofundales (2 genomes, 1329 marker genes, 184 marker sets)</option> <option value="Methanobacteriales">Methanobacteriales (12 genomes, 513 marker genes, 264 marker sets)</option> <option value="Methanocellales">Methanocellales (3 genomes, 712 marker genes, 317 marker sets)</option> <option value="Methanococcales">Methanococcales (16 genomes, 610 marker genes, 439 marker sets)</option> <option value="Methanomicrobiales">Methanomicrobiales (11 genomes, 465 marker genes, 230 marker sets)</option> <option value="Methanosarcinales">Methanosarcinales (14 genomes, 438 marker genes, 270 marker sets)</option> <option value="Methylococcales">Methylococcales (15 genomes, 684 marker genes, 348 marker sets)</option> <option value="Methylophilales">Methylophilales (16 genomes, 685 marker genes, 234 marker sets)</option> <option value="Mycoplasmatales">Mycoplasmatales (98 genomes, 217 marker genes, 127 marker sets)</option> <option value="Myxococcales">Myxococcales (8 genomes, 534 marker genes, 348 marker sets)</option> <option value="Nautiliales">Nautiliales (4 genomes, 712 marker genes, 351 marker sets)</option> <option value="Neisseriales">Neisseriales (69 genomes, 658 marker genes, 446 marker sets)</option> <option value="Nitrosomonadales">Nitrosomonadales (7 genomes, 851 marker genes, 314 marker sets)</option> <option value="Nitrosopumilales">Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets)</option> <option value="Nitrospirales">Nitrospirales (4 genomes, 676 marker genes, 379 marker sets)</option> <option value="Nostocales">Nostocales (18 genomes, 732 marker genes, 508 marker sets)</option> <option value="Oceanospirillales">Oceanospirillales (41 genomes, 497 marker genes, 229 marker sets)</option> <option value="Opitutales">Opitutales (3 genomes, 859 marker genes, 521 marker sets)</option> <option value="Oscillatoriales">Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets)</option> <option value="Pasteurellales">Pasteurellales (83 genomes, 767 marker genes, 440 marker sets)</option> <option value="Planctomycetales">Planctomycetales (10 genomes, 370 marker genes, 265 marker sets)</option> <option value="Pleurocapsales">Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets)</option> <option value="Prochlorales">Prochlorales (18 genomes, 806 marker genes, 240 marker sets)</option> <option value="Pseudomonadales">Pseudomonadales (274 genomes, 549 marker genes, 326 marker sets)</option> <option value="Rhizobiales">Rhizobiales (349 genomes, 407 marker genes, 244 marker sets)</option> <option value="Rhodobacterales">Rhodobacterales (104 genomes, 504 marker genes, 327 marker sets)</option> <option value="Rhodocyclales">Rhodocyclales (26 genomes, 625 marker genes, 264 marker sets)</option> <option value="Rhodospirillales">Rhodospirillales (57 genomes, 367 marker genes, 228 marker sets)</option> <option value="Rickettsiales">Rickettsiales (81 genomes, 325 marker genes, 210 marker sets)</option> <option value="Rubrobacterales">Rubrobacterales (2 genomes, 991 marker genes, 269 marker sets)</option> <option value="Selenomonadales">Selenomonadales (64 genomes, 334 marker genes, 167 marker sets)</option> <option value="Solirubrobacterales">Solirubrobacterales (4 genomes, 721 marker genes, 307 marker sets)</option> <option value="Sphingobacteriales">Sphingobacteriales (27 genomes, 334 marker genes, 233 marker sets)</option> <option value="Sphingomonadales">Sphingomonadales (31 genomes, 490 marker genes, 270 marker sets)</option> <option value="Spirochaetales">Spirochaetales (71 genomes, 218 marker genes, 127 marker sets)</option> <option value="Stigonematales">Stigonematales (5 genomes, 1007 marker genes, 576 marker sets)</option> <option value="Sulfolobales">Sulfolobales (20 genomes, 499 marker genes, 141 marker sets)</option> <option value="Synergistales">Synergistales (13 genomes, 452 marker genes, 160 marker sets)</option> <option value="Thermales">Thermales (23 genomes, 585 marker genes, 331 marker sets)</option> <option value="Thermoanaerobacterales">Thermoanaerobacterales (44 genomes, 308 marker genes, 158 marker sets)</option> <option value="Thermococcales">Thermococcales (16 genomes, 500 marker genes, 315 marker sets)</option> <option value="Thermodesulfobacteriales">Thermodesulfobacteriales (5 genomes, 813 marker genes, 440 marker sets)</option> <option value="Thermoplasmatales">Thermoplasmatales (4 genomes, 563 marker genes, 310 marker sets)</option> <option value="Thermoproteales">Thermoproteales (13 genomes, 315 marker genes, 257 marker sets)</option> <option value="Thermotogales">Thermotogales (14 genomes, 460 marker genes, 267 marker sets)</option> <option value="Thiotrichales">Thiotrichales (64 genomes, 406 marker genes, 251 marker sets)</option> <option value="Verrucomicrobiales">Verrucomicrobiales (7 genomes, 403 marker genes, 284 marker sets)</option> <option value="Vibrionales">Vibrionales (80 genomes, 922 marker genes, 367 marker sets)</option> <option value="Xanthomonadales">Xanthomonadales (63 genomes, 499 marker genes, 264 marker sets)</option> </param> </when> <when value="family"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Acetobacteraceae">Acetobacteraceae (30 genomes, 473 marker genes, 264 marker sets)</option> <option value="Acholeplasmataceae">Acholeplasmataceae (12 genomes, 176 marker genes, 88 marker sets)</option> <option value="Acidaminococcaceae">Acidaminococcaceae (7 genomes, 677 marker genes, 256 marker sets)</option> <option value="Acidilobaceae">Acidilobaceae (2 genomes, 645 marker genes, 144 marker sets)</option> <option value="Acidithiobacillaceae">Acidithiobacillaceae (5 genomes, 907 marker genes, 200 marker sets)</option> <option value="Acidobacteriaceae">Acidobacteriaceae (9 genomes, 575 marker genes, 396 marker sets)</option> <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> <option value="Actinomycetaceae">Actinomycetaceae (42 genomes, 420 marker genes, 211 marker sets)</option> <option value="Actinopolysporaceae">Actinopolysporaceae (3 genomes, 872 marker genes, 433 marker sets)</option> <option value="Aerococcaceae">Aerococcaceae (10 genomes, 424 marker genes, 195 marker sets)</option> <option value="Aeromonadaceae">Aeromonadaceae (17 genomes, 841 marker genes, 368 marker sets)</option> <option value="Alcaligenaceae">Alcaligenaceae (27 genomes, 486 marker genes, 218 marker sets)</option> <option value="Alcanivoracaceae">Alcanivoracaceae (8 genomes, 877 marker genes, 350 marker sets)</option> <option value="Alicyclobacillaceae">Alicyclobacillaceae (9 genomes, 608 marker genes, 229 marker sets)</option> <option value="Alteromonadaceae">Alteromonadaceae (38 genomes, 590 marker genes, 296 marker sets)</option> <option value="Anaplasmataceae">Anaplasmataceae (18 genomes, 319 marker genes, 212 marker sets)</option> <option value="Aquificaceae">Aquificaceae (10 genomes, 656 marker genes, 475 marker sets)</option> <option value="Archaeoglobaceae">Archaeoglobaceae (5 genomes, 619 marker genes, 392 marker sets)</option> <option value="Arthrospira">Arthrospira (2 genomes, 1432 marker genes, 419 marker sets)</option> <option value="Aurantimonadaceae">Aurantimonadaceae (4 genomes, 883 marker genes, 434 marker sets)</option> <option value="Bacillaceae">Bacillaceae (162 genomes, 418 marker genes, 155 marker sets)</option> <option value="Bacteroidaceae">Bacteroidaceae (96 genomes, 524 marker genes, 282 marker sets)</option> <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> <option value="Bartonellaceae">Bartonellaceae (29 genomes, 708 marker genes, 188 marker sets)</option> <option value="Bdellovibrionaceae">Bdellovibrionaceae (4 genomes, 561 marker genes, 331 marker sets)</option> <option value="Beijerinckiaceae">Beijerinckiaceae (4 genomes, 1024 marker genes, 488 marker sets)</option> <option value="Bifidobacteriaceae">Bifidobacteriaceae (77 genomes, 464 marker genes, 220 marker sets)</option> <option value="Blattabacteriaceae">Blattabacteriaceae (6 genomes, 547 marker genes, 16 marker sets)</option> <option value="Brachyspiraceae">Brachyspiraceae (10 genomes, 783 marker genes, 458 marker sets)</option> <option value="Bradyrhizobiaceae">Bradyrhizobiaceae (52 genomes, 619 marker genes, 276 marker sets)</option> <option value="Brevibacteriaceae">Brevibacteriaceae (3 genomes, 833 marker genes, 259 marker sets)</option> <option value="Brucellaceae">Brucellaceae (94 genomes, 1206 marker genes, 241 marker sets)</option> <option value="Burkholderiaceae">Burkholderiaceae (94 genomes, 568 marker genes, 224 marker sets)</option> <option value="Campylobacteraceae">Campylobacteraceae (66 genomes, 505 marker genes, 274 marker sets)</option> <option value="Cardiobacteriaceae">Cardiobacteriaceae (3 genomes, 807 marker genes, 349 marker sets)</option> <option value="Carnobacteriaceae">Carnobacteriaceae (7 genomes, 469 marker genes, 197 marker sets)</option> <option value="Caulobacteraceae">Caulobacteraceae (15 genomes, 644 marker genes, 366 marker sets)</option> <option value="Cellulomonadaceae">Cellulomonadaceae (7 genomes, 766 marker genes, 260 marker sets)</option> <option value="Chitinophagaceae">Chitinophagaceae (8 genomes, 634 marker genes, 396 marker sets)</option> <option value="Chlamydiaceae">Chlamydiaceae (59 genomes, 590 marker genes, 92 marker sets)</option> <option value="Chlorobiaceae">Chlorobiaceae (12 genomes, 612 marker genes, 333 marker sets)</option> <option value="Chloroflexaceae">Chloroflexaceae (7 genomes, 570 marker genes, 386 marker sets)</option> <option value="Chromatiaceae">Chromatiaceae (14 genomes, 545 marker genes, 300 marker sets)</option> <option value="Chroococcidiopsis">Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets)</option> <option value="Clostridiaceae">Clostridiaceae (10 genomes, 387 marker genes, 178 marker sets)</option> <option value="Clostridiales Family XI. Incertae Sedis">Clostridiales Family XI. Incertae Sedis (20 genomes, 345 marker genes, 186 marker sets)</option> <option value="Clostridiales Family XVII. Incertae Sedis">Clostridiales Family XVII. Incertae Sedis (5 genomes, 682 marker genes, 263 marker sets)</option> <option value="Colwelliaceae">Colwelliaceae (3 genomes, 1371 marker genes, 293 marker sets)</option> <option value="Comamonadaceae">Comamonadaceae (41 genomes, 669 marker genes, 297 marker sets)</option> <option value="Conexibacteraceae">Conexibacteraceae (2 genomes, 1064 marker genes, 347 marker sets)</option> <option value="Coriobacteriaceae">Coriobacteriaceae (23 genomes, 304 marker genes, 155 marker sets)</option> <option value="Corynebacteriaceae">Corynebacteriaceae (80 genomes, 585 marker genes, 243 marker sets)</option> <option value="Coxiellaceae">Coxiellaceae (5 genomes, 1047 marker genes, 146 marker sets)</option> <option value="Cryomorphaceae">Cryomorphaceae (3 genomes, 782 marker genes, 490 marker sets)</option> <option value="Cyanobacterium">Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets)</option> <option value="Cyanobium">Cyanobium (2 genomes, 1225 marker genes, 277 marker sets)</option> <option value="Cyanothece">Cyanothece (8 genomes, 865 marker genes, 653 marker sets)</option> <option value="Cyclobacteriaceae">Cyclobacteriaceae (13 genomes, 720 marker genes, 342 marker sets)</option> <option value="Cytophagaceae">Cytophagaceae (30 genomes, 383 marker genes, 278 marker sets)</option> <option value="Deferribacteraceae">Deferribacteraceae (5 genomes, 768 marker genes, 300 marker sets)</option> <option value="Dehalococcoidaceae">Dehalococcoidaceae (5 genomes, 755 marker genes, 54 marker sets)</option> <option value="Deinococcaceae">Deinococcaceae (16 genomes, 630 marker genes, 426 marker sets)</option> <option value="Dermabacteraceae">Dermabacteraceae (2 genomes, 876 marker genes, 242 marker sets)</option> <option value="Dermacoccaceae">Dermacoccaceae (3 genomes, 776 marker genes, 316 marker sets)</option> <option value="Dermatophilaceae">Dermatophilaceae (3 genomes, 866 marker genes, 346 marker sets)</option> <option value="Desulfobacteraceae">Desulfobacteraceae (14 genomes, 394 marker genes, 216 marker sets)</option> <option value="Desulfobulbaceae">Desulfobulbaceae (6 genomes, 626 marker genes, 290 marker sets)</option> <option value="Desulfohalobiaceae">Desulfohalobiaceae (3 genomes, 774 marker genes, 358 marker sets)</option> <option value="Desulfomicrobiaceae">Desulfomicrobiaceae (2 genomes, 1255 marker genes, 271 marker sets)</option> <option value="Desulfovibrionaceae">Desulfovibrionaceae (34 genomes, 497 marker genes, 270 marker sets)</option> <option value="Desulfurellaceae">Desulfurellaceae (4 genomes, 817 marker genes, 252 marker sets)</option> <option value="Desulfurobacteriaceae">Desulfurobacteriaceae (2 genomes, 965 marker genes, 410 marker sets)</option> <option value="Desulfurococcaceae">Desulfurococcaceae (12 genomes, 310 marker genes, 223 marker sets)</option> <option value="Dictyoglomaceae">Dictyoglomaceae (2 genomes, 1060 marker genes, 103 marker sets)</option> <option value="Ectothiorhodospiraceae">Ectothiorhodospiraceae (77 genomes, 837 marker genes, 294 marker sets)</option> <option value="Enterobacteriaceae">Enterobacteriaceae (262 genomes, 297 marker genes, 121 marker sets)</option> <option value="Enterococcaceae">Enterococcaceae (55 genomes, 542 marker genes, 226 marker sets)</option> <option value="Entomoplasmataceae">Entomoplasmataceae (8 genomes, 383 marker genes, 120 marker sets)</option> <option value="Erysipelotrichaceae">Erysipelotrichaceae (18 genomes, 301 marker genes, 159 marker sets)</option> <option value="Erythrobacteraceae">Erythrobacteraceae (4 genomes, 1071 marker genes, 266 marker sets)</option> <option value="Eubacteriaceae">Eubacteriaceae (22 genomes, 221 marker genes, 140 marker sets)</option> <option value="Exiguobacterium">Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets)</option> <option value="Fangia">Fangia (2 genomes, 1383 marker genes, 144 marker sets)</option> <option value="Ferrimonadaceae">Ferrimonadaceae (4 genomes, 1311 marker genes, 393 marker sets)</option> <option value="Fischerella">Fischerella (4 genomes, 1081 marker genes, 585 marker sets)</option> <option value="Flammeovirgaceae">Flammeovirgaceae (5 genomes, 626 marker genes, 437 marker sets)</option> <option value="Flavobacteriaceae">Flavobacteriaceae (115 genomes, 457 marker genes, 309 marker sets)</option> <option value="Francisellaceae">Francisellaceae (40 genomes, 787 marker genes, 238 marker sets)</option> <option value="Frankiaceae">Frankiaceae (12 genomes, 569 marker genes, 282 marker sets)</option> <option value="Fusobacteriaceae">Fusobacteriaceae (23 genomes, 431 marker genes, 189 marker sets)</option> <option value="Gemella">Gemella (5 genomes, 787 marker genes, 169 marker sets)</option> <option value="Geobacteraceae">Geobacteraceae (11 genomes, 631 marker genes, 310 marker sets)</option> <option value="Geodermatophilaceae">Geodermatophilaceae (5 genomes, 878 marker genes, 296 marker sets)</option> <option value="Gloeocapsa">Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets)</option> <option value="Glycomycetaceae">Glycomycetaceae (4 genomes, 840 marker genes, 375 marker sets)</option> <option value="Gordoniaceae">Gordoniaceae (26 genomes, 670 marker genes, 298 marker sets)</option> <option value="Hahellaceae">Hahellaceae (3 genomes, 1080 marker genes, 468 marker sets)</option> <option value="Halanaerobiaceae">Halanaerobiaceae (3 genomes, 702 marker genes, 192 marker sets)</option> <option value="Halobacteriaceae">Halobacteriaceae (58 genomes, 371 marker genes, 244 marker sets)</option> <option value="Halobacteroidaceae">Halobacteroidaceae (4 genomes, 788 marker genes, 219 marker sets)</option> <option value="Halomonadaceae">Halomonadaceae (15 genomes, 684 marker genes, 246 marker sets)</option> <option value="Helicobacteraceae">Helicobacteraceae (41 genomes, 498 marker genes, 302 marker sets)</option> <option value="Holophagaceae">Holophagaceae (2 genomes, 883 marker genes, 459 marker sets)</option> <option value="Hydrogenophilaceae">Hydrogenophilaceae (3 genomes, 1205 marker genes, 209 marker sets)</option> <option value="Hydrogenothermaceae">Hydrogenothermaceae (6 genomes, 840 marker genes, 402 marker sets)</option> <option value="Hyphomicrobiaceae">Hyphomicrobiaceae (12 genomes, 551 marker genes, 325 marker sets)</option> <option value="Hyphomonadaceae">Hyphomonadaceae (10 genomes, 761 marker genes, 398 marker sets)</option> <option value="Idiomarinaceae">Idiomarinaceae (5 genomes, 1057 marker genes, 247 marker sets)</option> <option value="Intrasporangiaceae">Intrasporangiaceae (8 genomes, 651 marker genes, 328 marker sets)</option> <option value="Jonesiaceae">Jonesiaceae (2 genomes, 1211 marker genes, 191 marker sets)</option> <option value="Lachnospiraceae">Lachnospiraceae (86 genomes, 312 marker genes, 160 marker sets)</option> <option value="Lactobacillaceae">Lactobacillaceae (143 genomes, 396 marker genes, 153 marker sets)</option> <option value="Legionellaceae">Legionellaceae (18 genomes, 695 marker genes, 290 marker sets)</option> <option value="Leptolyngbya">Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets)</option> <option value="Leptospiraceae">Leptospiraceae (5 genomes, 902 marker genes, 533 marker sets)</option> <option value="Leptotrichiaceae">Leptotrichiaceae (9 genomes, 467 marker genes, 239 marker sets)</option> <option value="Leuconostocaceae">Leuconostocaceae (35 genomes, 463 marker genes, 209 marker sets)</option> <option value="Listeriaceae">Listeriaceae (25 genomes, 873 marker genes, 158 marker sets)</option> <option value="Lyngbya">Lyngbya (2 genomes, 1111 marker genes, 753 marker sets)</option> <option value="Mariprofundaceae">Mariprofundaceae (2 genomes, 1329 marker genes, 184 marker sets)</option> <option value="Methanobacteriaceae">Methanobacteriaceae (11 genomes, 543 marker genes, 255 marker sets)</option> <option value="Methanocaldococcaceae">Methanocaldococcaceae (7 genomes, 743 marker genes, 524 marker sets)</option> <option value="Methanocellaceae">Methanocellaceae (3 genomes, 712 marker genes, 317 marker sets)</option> <option value="Methanococcaceae">Methanococcaceae (9 genomes, 669 marker genes, 370 marker sets)</option> <option value="Methanocorpusculaceae">Methanocorpusculaceae (2 genomes, 889 marker genes, 135 marker sets)</option> <option value="Methanomicrobiaceae">Methanomicrobiaceae (4 genomes, 645 marker genes, 231 marker sets)</option> <option value="Methanoregulaceae">Methanoregulaceae (4 genomes, 620 marker genes, 220 marker sets)</option> <option value="Methanosaetaceae">Methanosaetaceae (3 genomes, 700 marker genes, 354 marker sets)</option> <option value="Methanosarcinaceae">Methanosarcinaceae (10 genomes, 579 marker genes, 256 marker sets)</option> <option value="Methylobacteriaceae">Methylobacteriaceae (20 genomes, 455 marker genes, 308 marker sets)</option> <option value="Methylococcaceae">Methylococcaceae (15 genomes, 684 marker genes, 348 marker sets)</option> <option value="Methylocystaceae">Methylocystaceae (11 genomes, 610 marker genes, 373 marker sets)</option> <option value="Methylophilaceae">Methylophilaceae (14 genomes, 873 marker genes, 269 marker sets)</option> <option value="Microbacteriaceae">Microbacteriaceae (30 genomes, 416 marker genes, 190 marker sets)</option> <option value="Microchaetaceae">Microchaetaceae (2 genomes, 1208 marker genes, 646 marker sets)</option> <option value="Micrococcaceae">Micrococcaceae (38 genomes, 459 marker genes, 217 marker sets)</option> <option value="Microcoleus">Microcoleus (2 genomes, 1191 marker genes, 754 marker sets)</option> <option value="Micromonosporaceae">Micromonosporaceae (55 genomes, 713 marker genes, 273 marker sets)</option> <option value="Moraxellaceae">Moraxellaceae (86 genomes, 689 marker genes, 365 marker sets)</option> <option value="Mycobacteriaceae">Mycobacteriaceae (101 genomes, 682 marker genes, 290 marker sets)</option> <option value="Mycoplasmataceae">Mycoplasmataceae (98 genomes, 217 marker genes, 127 marker sets)</option> <option value="Myxococcaceae">Myxococcaceae (6 genomes, 707 marker genes, 364 marker sets)</option> <option value="Nakamurellaceae">Nakamurellaceae (2 genomes, 1011 marker genes, 427 marker sets)</option> <option value="Nautiliaceae">Nautiliaceae (4 genomes, 712 marker genes, 351 marker sets)</option> <option value="Neisseriaceae">Neisseriaceae (69 genomes, 658 marker genes, 446 marker sets)</option> <option value="Nitrosomonadaceae">Nitrosomonadaceae (7 genomes, 851 marker genes, 314 marker sets)</option> <option value="Nitrosopumilaceae">Nitrosopumilaceae (2 genomes, 714 marker genes, 109 marker sets)</option> <option value="Nitrospiraceae">Nitrospiraceae (4 genomes, 676 marker genes, 379 marker sets)</option> <option value="Nocardiaceae">Nocardiaceae (21 genomes, 559 marker genes, 269 marker sets)</option> <option value="Nocardioidaceae">Nocardioidaceae (11 genomes, 470 marker genes, 262 marker sets)</option> <option value="Nocardiopsaceae">Nocardiopsaceae (7 genomes, 826 marker genes, 316 marker sets)</option> <option value="Nostocaceae">Nostocaceae (13 genomes, 800 marker genes, 536 marker sets)</option> <option value="Oceanospirillaceae">Oceanospirillaceae (14 genomes, 636 marker genes, 305 marker sets)</option> <option value="Opitutaceae">Opitutaceae (3 genomes, 859 marker genes, 521 marker sets)</option> <option value="Oscillatoria">Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets)</option> <option value="Oxalobacteraceae">Oxalobacteraceae (16 genomes, 580 marker genes, 265 marker sets)</option> <option value="Paenibacillaceae">Paenibacillaceae (44 genomes, 492 marker genes, 188 marker sets)</option> <option value="Parachlamydiaceae">Parachlamydiaceae (3 genomes, 775 marker genes, 331 marker sets)</option> <option value="Pasteurellaceae">Pasteurellaceae (83 genomes, 767 marker genes, 440 marker sets)</option> <option value="Patulibacteraceae">Patulibacteraceae (2 genomes, 1012 marker genes, 347 marker sets)</option> <option value="Pelagibacteraceae">Pelagibacteraceae (15 genomes, 695 marker genes, 142 marker sets)</option> <option value="Pelobacteraceae">Pelobacteraceae (2 genomes, 958 marker genes, 487 marker sets)</option> <option value="Peptococcaceae">Peptococcaceae (23 genomes, 391 marker genes, 153 marker sets)</option> <option value="Peptostreptococcaceae">Peptostreptococcaceae (184 genomes, 287 marker genes, 151 marker sets)</option> <option value="Phyllobacteriaceae">Phyllobacteriaceae (26 genomes, 598 marker genes, 258 marker sets)</option> <option value="Piscirickettsiaceae">Piscirickettsiaceae (16 genomes, 638 marker genes, 292 marker sets)</option> <option value="Planctomycetaceae">Planctomycetaceae (10 genomes, 370 marker genes, 265 marker sets)</option> <option value="Planktothrix">Planktothrix (6 genomes, 1307 marker genes, 425 marker sets)</option> <option value="Planococcaceae">Planococcaceae (6 genomes, 823 marker genes, 233 marker sets)</option> <option value="Pleurocapsa">Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets)</option> <option value="Porphyromonadaceae">Porphyromonadaceae (37 genomes, 455 marker genes, 310 marker sets)</option> <option value="Prevotellaceae">Prevotellaceae (69 genomes, 553 marker genes, 298 marker sets)</option> <option value="Prochlorococcaceae">Prochlorococcaceae (18 genomes, 806 marker genes, 240 marker sets)</option> <option value="Promicromonosporaceae">Promicromonosporaceae (6 genomes, 783 marker genes, 376 marker sets)</option> <option value="Propionibacteriaceae">Propionibacteriaceae (40 genomes, 532 marker genes, 294 marker sets)</option> <option value="Pseudanabaena">Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets)</option> <option value="Pseudoalteromonadaceae">Pseudoalteromonadaceae (21 genomes, 782 marker genes, 307 marker sets)</option> <option value="Pseudomonadaceae">Pseudomonadaceae (186 genomes, 800 marker genes, 302 marker sets)</option> <option value="Pseudonocardiaceae">Pseudonocardiaceae (32 genomes, 364 marker genes, 201 marker sets)</option> <option value="Psychromonadaceae">Psychromonadaceae (5 genomes, 1062 marker genes, 326 marker sets)</option> <option value="Pyrodictiaceae">Pyrodictiaceae (2 genomes, 609 marker genes, 346 marker sets)</option> <option value="Rhizobiaceae">Rhizobiaceae (85 genomes, 515 marker genes, 225 marker sets)</option> <option value="Rhodobacteraceae">Rhodobacteraceae (91 genomes, 528 marker genes, 341 marker sets)</option> <option value="Rhodobiaceae">Rhodobiaceae (2 genomes, 1121 marker genes, 424 marker sets)</option> <option value="Rhodocyclaceae">Rhodocyclaceae (25 genomes, 641 marker genes, 269 marker sets)</option> <option value="Rhodospirillaceae">Rhodospirillaceae (26 genomes, 300 marker genes, 163 marker sets)</option> <option value="Rhodothermaceae">Rhodothermaceae (5 genomes, 801 marker genes, 466 marker sets)</option> <option value="Rickettsiaceae">Rickettsiaceae (46 genomes, 528 marker genes, 196 marker sets)</option> <option value="Rikenellaceae">Rikenellaceae (6 genomes, 648 marker genes, 386 marker sets)</option> <option value="Rivulariaceae">Rivulariaceae (3 genomes, 1070 marker genes, 642 marker sets)</option> <option value="Rubrivivax">Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets)</option> <option value="Rubrobacteraceae">Rubrobacteraceae (2 genomes, 991 marker genes, 269 marker sets)</option> <option value="Ruminococcaceae">Ruminococcaceae (20 genomes, 284 marker genes, 161 marker sets)</option> <option value="Saprospiraceae">Saprospiraceae (5 genomes, 671 marker genes, 479 marker sets)</option> <option value="Shewanellaceae">Shewanellaceae (26 genomes, 989 marker genes, 339 marker sets)</option> <option value="Sinobacteraceae">Sinobacteraceae (4 genomes, 1083 marker genes, 398 marker sets)</option> <option value="Solirubrobacteraceae">Solirubrobacteraceae (2 genomes, 995 marker genes, 398 marker sets)</option> <option value="Sphingobacteriaceae">Sphingobacteriaceae (11 genomes, 575 marker genes, 344 marker sets)</option> <option value="Sphingomonadaceae">Sphingomonadaceae (27 genomes, 501 marker genes, 275 marker sets)</option> <option value="Spirochaetaceae">Spirochaetaceae (56 genomes, 235 marker genes, 124 marker sets)</option> <option value="Sporolactobacillaceae">Sporolactobacillaceae (2 genomes, 1066 marker genes, 320 marker sets)</option> <option value="Staphylococcaceae">Staphylococcaceae (64 genomes, 642 marker genes, 181 marker sets)</option> <option value="Streptococcaceae">Streptococcaceae (240 genomes, 524 marker genes, 282 marker sets)</option> <option value="Streptomycetaceae">Streptomycetaceae (58 genomes, 506 marker genes, 264 marker sets)</option> <option value="Streptosporangiaceae">Streptosporangiaceae (2 genomes, 1116 marker genes, 473 marker sets)</option> <option value="Succinivibrionaceae">Succinivibrionaceae (6 genomes, 637 marker genes, 317 marker sets)</option> <option value="Sulfolobaceae">Sulfolobaceae (19 genomes, 526 marker genes, 149 marker sets)</option> <option value="Sutterellaceae">Sutterellaceae (4 genomes, 792 marker genes, 261 marker sets)</option> <option value="Synechococcus">Synechococcus (25 genomes, 554 marker genes, 425 marker sets)</option> <option value="Synechocystis">Synechocystis (5 genomes, 1099 marker genes, 794 marker sets)</option> <option value="Synergistaceae">Synergistaceae (13 genomes, 452 marker genes, 160 marker sets)</option> <option value="Syntrophomonadaceae">Syntrophomonadaceae (3 genomes, 744 marker genes, 271 marker sets)</option> <option value="Teredinibacter">Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets)</option> <option value="Thermaceae">Thermaceae (23 genomes, 585 marker genes, 331 marker sets)</option> <option value="Thermoactinomycetaceae">Thermoactinomycetaceae (2 genomes, 1027 marker genes, 387 marker sets)</option> <option value="Thermoanaerobacteraceae">Thermoanaerobacteraceae (24 genomes, 438 marker genes, 193 marker sets)</option> <option value="Thermoanaerobacterales Family III. Incertae Sedis">Thermoanaerobacterales Family III. Incertae Sedis (16 genomes, 599 marker genes, 251 marker sets)</option> <option value="Thermococcaceae">Thermococcaceae (16 genomes, 500 marker genes, 315 marker sets)</option> <option value="Thermodesulfobacteriaceae">Thermodesulfobacteriaceae (5 genomes, 813 marker genes, 440 marker sets)</option> <option value="Thermodesulfobiaceae">Thermodesulfobiaceae (3 genomes, 538 marker genes, 284 marker sets)</option> <option value="Thermomonosporaceae">Thermomonosporaceae (4 genomes, 839 marker genes, 346 marker sets)</option> <option value="Thermoplasmataceae">Thermoplasmataceae (2 genomes, 733 marker genes, 167 marker sets)</option> <option value="Thermoproteaceae">Thermoproteaceae (12 genomes, 410 marker genes, 333 marker sets)</option> <option value="Thermotogaceae">Thermotogaceae (14 genomes, 460 marker genes, 267 marker sets)</option> <option value="Thiomonas">Thiomonas (3 genomes, 1202 marker genes, 366 marker sets)</option> <option value="Thiotrichaceae">Thiotrichaceae (6 genomes, 764 marker genes, 473 marker sets)</option> <option value="Veillonellaceae">Veillonellaceae (57 genomes, 345 marker genes, 171 marker sets)</option> <option value="Verrucomicrobiaceae">Verrucomicrobiaceae (5 genomes, 505 marker genes, 342 marker sets)</option> <option value="Vibrionaceae">Vibrionaceae (80 genomes, 922 marker genes, 367 marker sets)</option> <option value="Xanthobacteraceae">Xanthobacteraceae (9 genomes, 824 marker genes, 433 marker sets)</option> <option value="Xanthomonadaceae">Xanthomonadaceae (58 genomes, 540 marker genes, 311 marker sets)</option> </param> </when> <when value="genus"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Acetobacter">Acetobacter (11 genomes, 1037 marker genes, 392 marker sets)</option> <option value="Acholeplasma">Acholeplasma (7 genomes, 309 marker genes, 151 marker sets)</option> <option value="Achromobacter">Achromobacter (5 genomes, 1298 marker genes, 427 marker sets)</option> <option value="Acidaminococcus">Acidaminococcus (5 genomes, 910 marker genes, 256 marker sets)</option> <option value="Acidilobus">Acidilobus (2 genomes, 645 marker genes, 144 marker sets)</option> <option value="Acidiphilium">Acidiphilium (3 genomes, 1244 marker genes, 339 marker sets)</option> <option value="Acidithiobacillus">Acidithiobacillus (5 genomes, 907 marker genes, 200 marker sets)</option> <option value="Acidobacterium">Acidobacterium (2 genomes, 1151 marker genes, 582 marker sets)</option> <option value="Acidovorax">Acidovorax (9 genomes, 931 marker genes, 335 marker sets)</option> <option value="Aciduliprofundum">Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)</option> <option value="Acinetobacter">Acinetobacter (66 genomes, 883 marker genes, 281 marker sets)</option> <option value="Actinobacillus">Actinobacillus (18 genomes, 1004 marker genes, 589 marker sets)</option> <option value="Actinobaculum">Actinobaculum (5 genomes, 606 marker genes, 222 marker sets)</option> <option value="Actinomadura">Actinomadura (3 genomes, 940 marker genes, 376 marker sets)</option> <option value="Actinomyces">Actinomyces (27 genomes, 432 marker genes, 214 marker sets)</option> <option value="Actinoplanes">Actinoplanes (3 genomes, 1041 marker genes, 394 marker sets)</option> <option value="Actinopolyspora">Actinopolyspora (3 genomes, 872 marker genes, 433 marker sets)</option> <option value="Aequorivita">Aequorivita (2 genomes, 1087 marker genes, 283 marker sets)</option> <option value="Aerococcus">Aerococcus (2 genomes, 719 marker genes, 247 marker sets)</option> <option value="Aeromonas">Aeromonas (12 genomes, 1380 marker genes, 463 marker sets)</option> <option value="Aggregatibacter">Aggregatibacter (13 genomes, 991 marker genes, 357 marker sets)</option> <option value="Agrobacterium">Agrobacterium (12 genomes, 994 marker genes, 379 marker sets)</option> <option value="Agromyces">Agromyces (2 genomes, 1096 marker genes, 287 marker sets)</option> <option value="Ahrensia">Ahrensia (2 genomes, 1213 marker genes, 422 marker sets)</option> <option value="Alcaligenes">Alcaligenes (2 genomes, 1577 marker genes, 235 marker sets)</option> <option value="Alcanivorax">Alcanivorax (6 genomes, 1175 marker genes, 317 marker sets)</option> <option value="Algoriphagus">Algoriphagus (5 genomes, 947 marker genes, 361 marker sets)</option> <option value="Aliagarivorans">Aliagarivorans (2 genomes, 1740 marker genes, 251 marker sets)</option> <option value="Alicycliphilus">Alicycliphilus (2 genomes, 1650 marker genes, 258 marker sets)</option> <option value="Alicyclobacillus">Alicyclobacillus (8 genomes, 664 marker genes, 240 marker sets)</option> <option value="Alishewanella">Alishewanella (2 genomes, 1677 marker genes, 232 marker sets)</option> <option value="Alistipes">Alistipes (5 genomes, 703 marker genes, 335 marker sets)</option> <option value="Alkaliphilus">Alkaliphilus (2 genomes, 970 marker genes, 326 marker sets)</option> <option value="Alloscardovia">Alloscardovia (2 genomes, 950 marker genes, 116 marker sets)</option> <option value="Alteromonas">Alteromonas (6 genomes, 1419 marker genes, 314 marker sets)</option> <option value="Aminobacterium">Aminobacterium (2 genomes, 950 marker genes, 145 marker sets)</option> <option value="Amycolatopsis">Amycolatopsis (12 genomes, 644 marker genes, 302 marker sets)</option> <option value="Anabaena">Anabaena (5 genomes, 992 marker genes, 584 marker sets)</option> <option value="Anaerococcus">Anaerococcus (6 genomes, 665 marker genes, 181 marker sets)</option> <option value="Anaeromyxobacter">Anaeromyxobacter (4 genomes, 1162 marker genes, 375 marker sets)</option> <option value="Anaplasma">Anaplasma (2 genomes, 688 marker genes, 127 marker sets)</option> <option value="Anoxybacillus">Anoxybacillus (5 genomes, 1141 marker genes, 212 marker sets)</option> <option value="Aquimarina">Aquimarina (2 genomes, 1084 marker genes, 373 marker sets)</option> <option value="Archaeoglobus">Archaeoglobus (4 genomes, 662 marker genes, 415 marker sets)</option> <option value="Arcobacter">Arcobacter (8 genomes, 804 marker genes, 234 marker sets)</option> <option value="Arenibacter">Arenibacter (2 genomes, 1200 marker genes, 269 marker sets)</option> <option value="Arsenophonus">Arsenophonus (4 genomes, 640 marker genes, 164 marker sets)</option> <option value="Arthrobacter">Arthrobacter (25 genomes, 473 marker genes, 190 marker sets)</option> <option value="Arthrospira">Arthrospira (2 genomes, 1432 marker genes, 419 marker sets)</option> <option value="Asticcacaulis">Asticcacaulis (3 genomes, 1116 marker genes, 409 marker sets)</option> <option value="Atopobium">Atopobium (8 genomes, 486 marker genes, 194 marker sets)</option> <option value="Aurantimonas">Aurantimonas (2 genomes, 1288 marker genes, 356 marker sets)</option> <option value="Azoarcus">Azoarcus (2 genomes, 1311 marker genes, 376 marker sets)</option> <option value="Azorhizobium">Azorhizobium (2 genomes, 1547 marker genes, 390 marker sets)</option> <option value="Azospira">Azospira (2 genomes, 1578 marker genes, 218 marker sets)</option> <option value="Azospirillum">Azospirillum (3 genomes, 1038 marker genes, 549 marker sets)</option> <option value="Azotobacter">Azotobacter (3 genomes, 1930 marker genes, 269 marker sets)</option> <option value="Bacillus">Bacillus (122 genomes, 491 marker genes, 170 marker sets)</option> <option value="Bacteroides">Bacteroides (96 genomes, 524 marker genes, 282 marker sets)</option> <option value="Bankia">Bankia (2 genomes, 1388 marker genes, 332 marker sets)</option> <option value="Barnesiella">Barnesiella (2 genomes, 1045 marker genes, 230 marker sets)</option> <option value="Bartonella">Bartonella (29 genomes, 708 marker genes, 188 marker sets)</option> <option value="Bdellovibrio">Bdellovibrio (3 genomes, 843 marker genes, 296 marker sets)</option> <option value="Bifidobacterium">Bifidobacterium (57 genomes, 582 marker genes, 204 marker sets)</option> <option value="Blastococcus">Blastococcus (2 genomes, 1123 marker genes, 317 marker sets)</option> <option value="Blattabacterium">Blattabacterium (6 genomes, 547 marker genes, 16 marker sets)</option> <option value="Blautia">Blautia (7 genomes, 649 marker genes, 291 marker sets)</option> <option value="Bordetella">Bordetella (9 genomes, 892 marker genes, 277 marker sets)</option> <option value="Borrelia">Borrelia (17 genomes, 474 marker genes, 66 marker sets)</option> <option value="Brachyspira">Brachyspira (10 genomes, 783 marker genes, 458 marker sets)</option> <option value="Bradyrhizobium">Bradyrhizobium (36 genomes, 826 marker genes, 337 marker sets)</option> <option value="Brevibacillus">Brevibacillus (4 genomes, 1162 marker genes, 391 marker sets)</option> <option value="Brevibacterium">Brevibacterium (3 genomes, 833 marker genes, 259 marker sets)</option> <option value="Brevundimonas">Brevundimonas (6 genomes, 952 marker genes, 452 marker sets)</option> <option value="Brucella">Brucella (90 genomes, 1371 marker genes, 236 marker sets)</option> <option value="Buchnera">Buchnera (10 genomes, 380 marker genes, 35 marker sets)</option> <option value="Burkholderia">Burkholderia (66 genomes, 724 marker genes, 235 marker sets)</option> <option value="Butyricimonas">Butyricimonas (2 genomes, 1102 marker genes, 296 marker sets)</option> <option value="Butyrivibrio">Butyrivibrio (31 genomes, 578 marker genes, 245 marker sets)</option> <option value="Caldicellulosiruptor">Caldicellulosiruptor (11 genomes, 1010 marker genes, 169 marker sets)</option> <option value="Calothrix">Calothrix (2 genomes, 1244 marker genes, 726 marker sets)</option> <option value="Campylobacter">Campylobacter (55 genomes, 598 marker genes, 263 marker sets)</option> <option value="Candidatus Arthromitus">Candidatus Arthromitus (5 genomes, 889 marker genes, 153 marker sets)</option> <option value="Candidatus Blochmannia">Candidatus Blochmannia (3 genomes, 714 marker genes, 3 marker sets)</option> <option value="Candidatus Liberibacter">Candidatus Liberibacter (3 genomes, 764 marker genes, 141 marker sets)</option> <option value="Candidatus Pelagibacter">Candidatus Pelagibacter (12 genomes, 715 marker genes, 144 marker sets)</option> <option value="Candidatus Pelagibacter-like">Candidatus Pelagibacter-like (3 genomes, 911 marker genes, 76 marker sets)</option> <option value="Candidatus Phytoplasma">Candidatus Phytoplasma (4 genomes, 294 marker genes, 86 marker sets)</option> <option value="Capnocytophaga">Capnocytophaga (15 genomes, 728 marker genes, 514 marker sets)</option> <option value="Carboxydothermus">Carboxydothermus (2 genomes, 1295 marker genes, 139 marker sets)</option> <option value="Cardiobacterium">Cardiobacterium (2 genomes, 1153 marker genes, 474 marker sets)</option> <option value="Caulobacter">Caulobacter (4 genomes, 1219 marker genes, 375 marker sets)</option> <option value="Cellulomonas">Cellulomonas (6 genomes, 805 marker genes, 257 marker sets)</option> <option value="Cellulophaga">Cellulophaga (2 genomes, 1092 marker genes, 357 marker sets)</option> <option value="Chitinilyticum">Chitinilyticum (2 genomes, 1527 marker genes, 343 marker sets)</option> <option value="Chlamydia">Chlamydia (43 genomes, 609 marker genes, 88 marker sets)</option> <option value="Chlamydophila">Chlamydophila (16 genomes, 616 marker genes, 71 marker sets)</option> <option value="Chlorobaculum">Chlorobaculum (2 genomes, 1098 marker genes, 186 marker sets)</option> <option value="Chlorobium">Chlorobium (6 genomes, 820 marker genes, 277 marker sets)</option> <option value="Chloroflexus">Chloroflexus (5 genomes, 659 marker genes, 449 marker sets)</option> <option value="Chroococcidiopsis">Chroococcidiopsis (2 genomes, 1159 marker genes, 811 marker sets)</option> <option value="Chryseobacterium">Chryseobacterium (6 genomes, 812 marker genes, 414 marker sets)</option> <option value="Citreicella">Citreicella (2 genomes, 1369 marker genes, 390 marker sets)</option> <option value="Citrobacter">Citrobacter (8 genomes, 1566 marker genes, 347 marker sets)</option> <option value="Citromicrobium">Citromicrobium (2 genomes, 1356 marker genes, 186 marker sets)</option> <option value="Clavibacter">Clavibacter (2 genomes, 1152 marker genes, 228 marker sets)</option> <option value="Clostridium">Clostridium (180 genomes, 308 marker genes, 161 marker sets)</option> <option value="Cohnella">Cohnella (3 genomes, 1072 marker genes, 306 marker sets)</option> <option value="Collinsella">Collinsella (2 genomes, 829 marker genes, 315 marker sets)</option> <option value="Colwellia">Colwellia (3 genomes, 1371 marker genes, 293 marker sets)</option> <option value="Comamonas">Comamonas (5 genomes, 1047 marker genes, 399 marker sets)</option> <option value="Commensalibacter">Commensalibacter (2 genomes, 1241 marker genes, 137 marker sets)</option> <option value="Conchiformibius">Conchiformibius (2 genomes, 1237 marker genes, 317 marker sets)</option> <option value="Coprobacillus">Coprobacillus (3 genomes, 833 marker genes, 331 marker sets)</option> <option value="Coprococcus">Coprococcus (3 genomes, 780 marker genes, 260 marker sets)</option> <option value="Coprothermobacter">Coprothermobacter (2 genomes, 870 marker genes, 70 marker sets)</option> <option value="Corynebacterium">Corynebacterium (80 genomes, 585 marker genes, 243 marker sets)</option> <option value="Coxiella">Coxiella (5 genomes, 1047 marker genes, 146 marker sets)</option> <option value="Cronobacter">Cronobacter (4 genomes, 1838 marker genes, 338 marker sets)</option> <option value="Cupriavidus">Cupriavidus (8 genomes, 1163 marker genes, 352 marker sets)</option> <option value="Curtobacterium">Curtobacterium (2 genomes, 952 marker genes, 330 marker sets)</option> <option value="Curvibacter">Curvibacter (2 genomes, 1707 marker genes, 367 marker sets)</option> <option value="Cyanobacterium">Cyanobacterium (4 genomes, 650 marker genes, 477 marker sets)</option> <option value="Cyanobium">Cyanobium (2 genomes, 1225 marker genes, 277 marker sets)</option> <option value="Cyanothece">Cyanothece (8 genomes, 865 marker genes, 653 marker sets)</option> <option value="Cycloclasticus">Cycloclasticus (2 genomes, 1507 marker genes, 85 marker sets)</option> <option value="Cytophaga">Cytophaga (3 genomes, 745 marker genes, 464 marker sets)</option> <option value="Dechloromonas">Dechloromonas (4 genomes, 1203 marker genes, 276 marker sets)</option> <option value="Dehalobacter">Dehalobacter (3 genomes, 1160 marker genes, 157 marker sets)</option> <option value="Dehalococcoides">Dehalococcoides (5 genomes, 755 marker genes, 54 marker sets)</option> <option value="Deinococcus">Deinococcus (16 genomes, 630 marker genes, 426 marker sets)</option> <option value="Delftia">Delftia (3 genomes, 1683 marker genes, 409 marker sets)</option> <option value="Desulfatibacillum">Desulfatibacillum (2 genomes, 1377 marker genes, 388 marker sets)</option> <option value="Desulfobacterium">Desulfobacterium (3 genomes, 680 marker genes, 365 marker sets)</option> <option value="Desulfobulbus">Desulfobulbus (4 genomes, 863 marker genes, 276 marker sets)</option> <option value="Desulfomicrobium">Desulfomicrobium (2 genomes, 1255 marker genes, 271 marker sets)</option> <option value="Desulfosporosinus">Desulfosporosinus (4 genomes, 915 marker genes, 249 marker sets)</option> <option value="Desulfotignum">Desulfotignum (2 genomes, 1216 marker genes, 274 marker sets)</option> <option value="Desulfotomaculum">Desulfotomaculum (9 genomes, 640 marker genes, 214 marker sets)</option> <option value="Desulfovibrio">Desulfovibrio (31 genomes, 431 marker genes, 224 marker sets)</option> <option value="Desulfurococcus">Desulfurococcus (4 genomes, 599 marker genes, 129 marker sets)</option> <option value="Dialister">Dialister (4 genomes, 695 marker genes, 210 marker sets)</option> <option value="Dickeya">Dickeya (4 genomes, 1671 marker genes, 311 marker sets)</option> <option value="Dictyoglomus">Dictyoglomus (2 genomes, 1060 marker genes, 103 marker sets)</option> <option value="Dorea">Dorea (4 genomes, 835 marker genes, 261 marker sets)</option> <option value="Dyadobacter">Dyadobacter (4 genomes, 1056 marker genes, 319 marker sets)</option> <option value="Dysgonomonas">Dysgonomonas (3 genomes, 912 marker genes, 480 marker sets)</option> <option value="Echinicola">Echinicola (2 genomes, 1196 marker genes, 350 marker sets)</option> <option value="Ectothiorhodospira">Ectothiorhodospira (2 genomes, 1465 marker genes, 274 marker sets)</option> <option value="Edwardsiella">Edwardsiella (2 genomes, 1903 marker genes, 174 marker sets)</option> <option value="Eggerthella">Eggerthella (4 genomes, 843 marker genes, 301 marker sets)</option> <option value="Ehrlichia">Ehrlichia (6 genomes, 704 marker genes, 87 marker sets)</option> <option value="Elizabethkingia">Elizabethkingia (3 genomes, 1251 marker genes, 240 marker sets)</option> <option value="Ensifer">Ensifer (26 genomes, 1043 marker genes, 323 marker sets)</option> <option value="Enterobacter">Enterobacter (13 genomes, 1338 marker genes, 370 marker sets)</option> <option value="Enterococcus">Enterococcus (51 genomes, 672 marker genes, 259 marker sets)</option> <option value="Enterovibrio">Enterovibrio (2 genomes, 1819 marker genes, 389 marker sets)</option> <option value="Entomoplasma">Entomoplasma (3 genomes, 460 marker genes, 109 marker sets)</option> <option value="Eremococcus">Eremococcus (2 genomes, 922 marker genes, 109 marker sets)</option> <option value="Erwinia">Erwinia (8 genomes, 1420 marker genes, 280 marker sets)</option> <option value="Erysipelothrix">Erysipelothrix (2 genomes, 843 marker genes, 95 marker sets)</option> <option value="Erythrobacter">Erythrobacter (3 genomes, 1146 marker genes, 256 marker sets)</option> <option value="Escherichia">Escherichia (27 genomes, 1212 marker genes, 320 marker sets)</option> <option value="Eubacterium">Eubacterium (18 genomes, 234 marker genes, 157 marker sets)</option> <option value="Exiguobacterium">Exiguobacterium (11 genomes, 1039 marker genes, 263 marker sets)</option> <option value="Facklamia">Facklamia (5 genomes, 575 marker genes, 184 marker sets)</option> <option value="Faecalibacterium">Faecalibacterium (2 genomes, 1019 marker genes, 264 marker sets)</option> <option value="Fangia">Fangia (2 genomes, 1383 marker genes, 144 marker sets)</option> <option value="Ferrimonas">Ferrimonas (4 genomes, 1311 marker genes, 393 marker sets)</option> <option value="Finegoldia">Finegoldia (5 genomes, 878 marker genes, 111 marker sets)</option> <option value="Fischerella">Fischerella (4 genomes, 1081 marker genes, 585 marker sets)</option> <option value="Flavobacterium">Flavobacterium (20 genomes, 575 marker genes, 320 marker sets)</option> <option value="Flexibacter">Flexibacter (3 genomes, 877 marker genes, 663 marker sets)</option> <option value="Francisella">Francisella (40 genomes, 787 marker genes, 238 marker sets)</option> <option value="Frankia">Frankia (11 genomes, 597 marker genes, 285 marker sets)</option> <option value="Fusobacterium">Fusobacterium (21 genomes, 502 marker genes, 210 marker sets)</option> <option value="Gallibacterium">Gallibacterium (2 genomes, 1519 marker genes, 168 marker sets)</option> <option value="Gardnerella">Gardnerella (14 genomes, 621 marker genes, 237 marker sets)</option> <option value="Gemella">Gemella (5 genomes, 787 marker genes, 169 marker sets)</option> <option value="Geobacillus">Geobacillus (15 genomes, 823 marker genes, 228 marker sets)</option> <option value="Geobacter">Geobacter (10 genomes, 732 marker genes, 332 marker sets)</option> <option value="Gillisia">Gillisia (2 genomes, 1096 marker genes, 276 marker sets)</option> <option value="Glaciecola">Glaciecola (9 genomes, 1063 marker genes, 369 marker sets)</option> <option value="Gloeocapsa">Gloeocapsa (2 genomes, 1115 marker genes, 740 marker sets)</option> <option value="Gluconacetobacter">Gluconacetobacter (4 genomes, 1030 marker genes, 240 marker sets)</option> <option value="Gluconobacter">Gluconobacter (3 genomes, 1076 marker genes, 207 marker sets)</option> <option value="Glycomyces">Glycomyces (2 genomes, 1177 marker genes, 326 marker sets)</option> <option value="Gordonia">Gordonia (26 genomes, 670 marker genes, 298 marker sets)</option> <option value="Gramella">Gramella (3 genomes, 1089 marker genes, 213 marker sets)</option> <option value="Granulicatella">Granulicatella (2 genomes, 891 marker genes, 249 marker sets)</option> <option value="Granulicella">Granulicella (2 genomes, 1075 marker genes, 507 marker sets)</option> <option value="Haemophilus">Haemophilus (35 genomes, 829 marker genes, 480 marker sets)</option> <option value="Hahella">Hahella (2 genomes, 1567 marker genes, 475 marker sets)</option> <option value="Halalkalicoccus">Halalkalicoccus (2 genomes, 1003 marker genes, 212 marker sets)</option> <option value="Halanaerobium">Halanaerobium (2 genomes, 898 marker genes, 186 marker sets)</option> <option value="Haliea">Haliea (2 genomes, 1214 marker genes, 329 marker sets)</option> <option value="Haloarcula">Haloarcula (7 genomes, 842 marker genes, 250 marker sets)</option> <option value="Halobacillus">Halobacillus (3 genomes, 1266 marker genes, 292 marker sets)</option> <option value="Halobacterium">Halobacterium (3 genomes, 704 marker genes, 224 marker sets)</option> <option value="Halobiforma">Halobiforma (2 genomes, 1026 marker genes, 320 marker sets)</option> <option value="Halococcus">Halococcus (2 genomes, 767 marker genes, 347 marker sets)</option> <option value="Haloferax">Haloferax (10 genomes, 763 marker genes, 229 marker sets)</option> <option value="Halomicrobium">Halomicrobium (2 genomes, 970 marker genes, 233 marker sets)</option> <option value="Halomonas">Halomonas (11 genomes, 840 marker genes, 268 marker sets)</option> <option value="Haloquadratum">Haloquadratum (3 genomes, 798 marker genes, 192 marker sets)</option> <option value="Halorubrum">Halorubrum (4 genomes, 710 marker genes, 295 marker sets)</option> <option value="Haloterrigena">Haloterrigena (2 genomes, 826 marker genes, 332 marker sets)</option> <option value="Helicobacter">Helicobacter (33 genomes, 490 marker genes, 276 marker sets)</option> <option value="Herbaspirillum">Herbaspirillum (3 genomes, 1324 marker genes, 341 marker sets)</option> <option value="Hippea">Hippea (3 genomes, 979 marker genes, 157 marker sets)</option> <option value="Hirschia">Hirschia (2 genomes, 1333 marker genes, 222 marker sets)</option> <option value="Histophilus">Histophilus (2 genomes, 1341 marker genes, 98 marker sets)</option> <option value="Hydrogenobacter">Hydrogenobacter (2 genomes, 1116 marker genes, 52 marker sets)</option> <option value="Hydrogenobaculum">Hydrogenobaculum (5 genomes, 989 marker genes, 63 marker sets)</option> <option value="Hymenobacter">Hymenobacter (3 genomes, 998 marker genes, 370 marker sets)</option> <option value="Hyphomicrobium">Hyphomicrobium (7 genomes, 966 marker genes, 312 marker sets)</option> <option value="Idiomarina">Idiomarina (5 genomes, 1057 marker genes, 247 marker sets)</option> <option value="Isoptericola">Isoptericola (2 genomes, 1351 marker genes, 168 marker sets)</option> <option value="Janibacter">Janibacter (2 genomes, 1001 marker genes, 385 marker sets)</option> <option value="Janthinobacterium">Janthinobacterium (4 genomes, 1001 marker genes, 351 marker sets)</option> <option value="Jeotgalicoccus">Jeotgalicoccus (2 genomes, 1124 marker genes, 142 marker sets)</option> <option value="Jonesia">Jonesia (2 genomes, 1211 marker genes, 191 marker sets)</option> <option value="Jonquetella">Jonquetella (2 genomes, 987 marker genes, 78 marker sets)</option> <option value="Kaistia">Kaistia (2 genomes, 1516 marker genes, 278 marker sets)</option> <option value="Kandleria">Kandleria (3 genomes, 1026 marker genes, 154 marker sets)</option> <option value="Kangiella">Kangiella (2 genomes, 1480 marker genes, 165 marker sets)</option> <option value="Kingella">Kingella (3 genomes, 1040 marker genes, 614 marker sets)</option> <option value="Klebsiella">Klebsiella (29 genomes, 1359 marker genes, 348 marker sets)</option> <option value="Labrenzia">Labrenzia (2 genomes, 1431 marker genes, 424 marker sets)</option> <option value="Lachnobacterium">Lachnobacterium (2 genomes, 1164 marker genes, 173 marker sets)</option> <option value="Lachnospira">Lachnospira (3 genomes, 1045 marker genes, 196 marker sets)</option> <option value="Lactobacillus">Lactobacillus (135 genomes, 409 marker genes, 155 marker sets)</option> <option value="Lactococcus">Lactococcus (14 genomes, 683 marker genes, 238 marker sets)</option> <option value="Laribacter">Laribacter (2 genomes, 1579 marker genes, 150 marker sets)</option> <option value="Leeuwenhoekiella">Leeuwenhoekiella (2 genomes, 1172 marker genes, 263 marker sets)</option> <option value="Legionella">Legionella (18 genomes, 695 marker genes, 290 marker sets)</option> <option value="Leifsonia">Leifsonia (2 genomes, 888 marker genes, 212 marker sets)</option> <option value="Leisingera">Leisingera (3 genomes, 1200 marker genes, 365 marker sets)</option> <option value="Leptolyngbya">Leptolyngbya (3 genomes, 917 marker genes, 660 marker sets)</option> <option value="Leptospira">Leptospira (4 genomes, 1176 marker genes, 280 marker sets)</option> <option value="Leptotrichia">Leptotrichia (7 genomes, 750 marker genes, 335 marker sets)</option> <option value="Leucobacter">Leucobacter (2 genomes, 948 marker genes, 255 marker sets)</option> <option value="Leuconostoc">Leuconostoc (15 genomes, 611 marker genes, 181 marker sets)</option> <option value="Lewinella">Lewinella (2 genomes, 1073 marker genes, 736 marker sets)</option> <option value="Listeria">Listeria (24 genomes, 1137 marker genes, 165 marker sets)</option> <option value="Loktanella">Loktanella (5 genomes, 1000 marker genes, 308 marker sets)</option> <option value="Luteimonas">Luteimonas (2 genomes, 1277 marker genes, 311 marker sets)</option> <option value="Lyngbya">Lyngbya (2 genomes, 1111 marker genes, 753 marker sets)</option> <option value="Lysinibacillus">Lysinibacillus (3 genomes, 1381 marker genes, 323 marker sets)</option> <option value="Lysobacter">Lysobacter (2 genomes, 1235 marker genes, 265 marker sets)</option> <option value="Magnetospirillum">Magnetospirillum (3 genomes, 1103 marker genes, 429 marker sets)</option> <option value="Mannheimia">Mannheimia (4 genomes, 1320 marker genes, 245 marker sets)</option> <option value="Maribacter">Maribacter (3 genomes, 905 marker genes, 290 marker sets)</option> <option value="Marinobacter">Marinobacter (8 genomes, 993 marker genes, 273 marker sets)</option> <option value="Marinobacterium">Marinobacterium (3 genomes, 1157 marker genes, 339 marker sets)</option> <option value="Marinomonas">Marinomonas (4 genomes, 1256 marker genes, 320 marker sets)</option> <option value="Mariprofundus">Mariprofundus (2 genomes, 1329 marker genes, 184 marker sets)</option> <option value="Maritimibacter">Maritimibacter (2 genomes, 1288 marker genes, 421 marker sets)</option> <option value="Massilia">Massilia (3 genomes, 1363 marker genes, 402 marker sets)</option> <option value="Megamonas">Megamonas (3 genomes, 1113 marker genes, 288 marker sets)</option> <option value="Megasphaera">Megasphaera (7 genomes, 696 marker genes, 211 marker sets)</option> <option value="Meiothermus">Meiothermus (7 genomes, 852 marker genes, 456 marker sets)</option> <option value="Mesoplasma">Mesoplasma (5 genomes, 409 marker genes, 104 marker sets)</option> <option value="Mesorhizobium">Mesorhizobium (20 genomes, 767 marker genes, 381 marker sets)</option> <option value="Metallosphaera">Metallosphaera (3 genomes, 690 marker genes, 177 marker sets)</option> <option value="Methanobacterium">Methanobacterium (3 genomes, 797 marker genes, 214 marker sets)</option> <option value="Methanobrevibacter">Methanobrevibacter (5 genomes, 748 marker genes, 267 marker sets)</option> <option value="Methanocaldococcus">Methanocaldococcus (5 genomes, 799 marker genes, 537 marker sets)</option> <option value="Methanocella">Methanocella (3 genomes, 712 marker genes, 317 marker sets)</option> <option value="Methanococcus">Methanococcus (7 genomes, 710 marker genes, 377 marker sets)</option> <option value="Methanocorpusculum">Methanocorpusculum (2 genomes, 889 marker genes, 135 marker sets)</option> <option value="Methanolobus">Methanolobus (2 genomes, 944 marker genes, 240 marker sets)</option> <option value="Methanoplanus">Methanoplanus (2 genomes, 830 marker genes, 217 marker sets)</option> <option value="Methanosaeta">Methanosaeta (3 genomes, 700 marker genes, 354 marker sets)</option> <option value="Methanosarcina">Methanosarcina (3 genomes, 849 marker genes, 306 marker sets)</option> <option value="Methanothermobacter">Methanothermobacter (2 genomes, 965 marker genes, 76 marker sets)</option> <option value="Methanothermococcus">Methanothermococcus (2 genomes, 869 marker genes, 366 marker sets)</option> <option value="Methanotorris">Methanotorris (2 genomes, 891 marker genes, 279 marker sets)</option> <option value="Methylobacter">Methylobacter (2 genomes, 1294 marker genes, 436 marker sets)</option> <option value="Methylobacterium">Methylobacterium (16 genomes, 606 marker genes, 394 marker sets)</option> <option value="Methylococcus">Methylococcus (2 genomes, 1613 marker genes, 188 marker sets)</option> <option value="Methylocystis">Methylocystis (3 genomes, 1172 marker genes, 334 marker sets)</option> <option value="Methylomicrobium">Methylomicrobium (2 genomes, 1316 marker genes, 550 marker sets)</option> <option value="Methylomonas">Methylomonas (4 genomes, 1325 marker genes, 423 marker sets)</option> <option value="Methylophaga">Methylophaga (4 genomes, 1119 marker genes, 219 marker sets)</option> <option value="Methylophilus">Methylophilus (4 genomes, 1346 marker genes, 180 marker sets)</option> <option value="Methylopila">Methylopila (2 genomes, 1430 marker genes, 482 marker sets)</option> <option value="Methylosarcina">Methylosarcina (2 genomes, 1415 marker genes, 498 marker sets)</option> <option value="Methylosinus">Methylosinus (3 genomes, 1300 marker genes, 501 marker sets)</option> <option value="Methylotenera">Methylotenera (6 genomes, 1078 marker genes, 217 marker sets)</option> <option value="Methyloversatilis">Methyloversatilis (6 genomes, 1297 marker genes, 270 marker sets)</option> <option value="Methylovorus">Methylovorus (2 genomes, 1496 marker genes, 132 marker sets)</option> <option value="Microbacterium">Microbacterium (11 genomes, 623 marker genes, 280 marker sets)</option> <option value="Microcoleus">Microcoleus (2 genomes, 1191 marker genes, 754 marker sets)</option> <option value="Micromonospora">Micromonospora (5 genomes, 921 marker genes, 349 marker sets)</option> <option value="Microvirga">Microvirga (2 genomes, 1319 marker genes, 353 marker sets)</option> <option value="Mobiluncus">Mobiluncus (8 genomes, 830 marker genes, 222 marker sets)</option> <option value="Moorella">Moorella (2 genomes, 1125 marker genes, 231 marker sets)</option> <option value="Moraxella">Moraxella (10 genomes, 915 marker genes, 523 marker sets)</option> <option value="Morganella">Morganella (2 genomes, 1883 marker genes, 217 marker sets)</option> <option value="Mycobacterium">Mycobacterium (100 genomes, 693 marker genes, 300 marker sets)</option> <option value="Mycoplasma">Mycoplasma (83 genomes, 226 marker genes, 133 marker sets)</option> <option value="Myroides">Myroides (7 genomes, 948 marker genes, 335 marker sets)</option> <option value="Natrialba">Natrialba (3 genomes, 716 marker genes, 277 marker sets)</option> <option value="Natrinema">Natrinema (3 genomes, 796 marker genes, 297 marker sets)</option> <option value="Natronobacterium">Natronobacterium (2 genomes, 1012 marker genes, 271 marker sets)</option> <option value="Natronorubrum">Natronorubrum (2 genomes, 1039 marker genes, 332 marker sets)</option> <option value="Neisseria">Neisseria (47 genomes, 887 marker genes, 501 marker sets)</option> <option value="Neorickettsia">Neorickettsia (2 genomes, 678 marker genes, 16 marker sets)</option> <option value="Nesterenkonia">Nesterenkonia (2 genomes, 929 marker genes, 286 marker sets)</option> <option value="Niabella">Niabella (2 genomes, 1123 marker genes, 403 marker sets)</option> <option value="Nisaea">Nisaea (2 genomes, 1230 marker genes, 423 marker sets)</option> <option value="Nitratireductor">Nitratireductor (3 genomes, 1196 marker genes, 283 marker sets)</option> <option value="Nitratiruptor">Nitratiruptor (2 genomes, 1056 marker genes, 138 marker sets)</option> <option value="Nitrobacter">Nitrobacter (3 genomes, 1233 marker genes, 239 marker sets)</option> <option value="Nitrosococcus">Nitrosococcus (2 genomes, 1342 marker genes, 283 marker sets)</option> <option value="Nitrosomonas">Nitrosomonas (5 genomes, 957 marker genes, 324 marker sets)</option> <option value="Nitrosospira">Nitrosospira (2 genomes, 1303 marker genes, 242 marker sets)</option> <option value="Nocardia">Nocardia (6 genomes, 799 marker genes, 372 marker sets)</option> <option value="Nocardioides">Nocardioides (8 genomes, 683 marker genes, 299 marker sets)</option> <option value="Nocardiopsis">Nocardiopsis (4 genomes, 1007 marker genes, 327 marker sets)</option> <option value="Nostoc">Nostoc (5 genomes, 995 marker genes, 585 marker sets)</option> <option value="Novosphingobium">Novosphingobium (5 genomes, 907 marker genes, 296 marker sets)</option> <option value="Oceanicaulis">Oceanicaulis (2 genomes, 1398 marker genes, 175 marker sets)</option> <option value="Oceanicola">Oceanicola (4 genomes, 998 marker genes, 439 marker sets)</option> <option value="Oceanimonas">Oceanimonas (3 genomes, 1478 marker genes, 267 marker sets)</option> <option value="Oceanobacillus">Oceanobacillus (2 genomes, 1474 marker genes, 211 marker sets)</option> <option value="Oceanospirillum">Oceanospirillum (2 genomes, 1479 marker genes, 371 marker sets)</option> <option value="Ochrobactrum">Ochrobactrum (4 genomes, 1412 marker genes, 260 marker sets)</option> <option value="Octadecabacter">Octadecabacter (2 genomes, 1308 marker genes, 284 marker sets)</option> <option value="Odoribacter">Odoribacter (2 genomes, 1031 marker genes, 350 marker sets)</option> <option value="Oenococcus">Oenococcus (13 genomes, 679 marker genes, 136 marker sets)</option> <option value="Oligella">Oligella (2 genomes, 1242 marker genes, 186 marker sets)</option> <option value="Oligotropha">Oligotropha (2 genomes, 1592 marker genes, 192 marker sets)</option> <option value="Olleya">Olleya (2 genomes, 1165 marker genes, 249 marker sets)</option> <option value="Olsenella">Olsenella (2 genomes, 781 marker genes, 213 marker sets)</option> <option value="Oribacterium">Oribacterium (5 genomes, 555 marker genes, 211 marker sets)</option> <option value="Orientia">Orientia (2 genomes, 651 marker genes, 94 marker sets)</option> <option value="Ornithobacterium">Ornithobacterium (2 genomes, 1172 marker genes, 138 marker sets)</option> <option value="Oscillatoria">Oscillatoria (3 genomes, 1076 marker genes, 673 marker sets)</option> <option value="Oxalobacter">Oxalobacter (2 genomes, 1179 marker genes, 133 marker sets)</option> <option value="Paenibacillus">Paenibacillus (33 genomes, 473 marker genes, 180 marker sets)</option> <option value="Pantoea">Pantoea (10 genomes, 1403 marker genes, 316 marker sets)</option> <option value="Parabacteroides">Parabacteroides (6 genomes, 970 marker genes, 371 marker sets)</option> <option value="Parachlamydia">Parachlamydia (2 genomes, 1064 marker genes, 203 marker sets)</option> <option value="Paracoccus">Paracoccus (8 genomes, 917 marker genes, 340 marker sets)</option> <option value="Paraprevotella">Paraprevotella (2 genomes, 1113 marker genes, 229 marker sets)</option> <option value="Parascardovia">Parascardovia (2 genomes, 908 marker genes, 87 marker sets)</option> <option value="Pasteurella">Pasteurella (8 genomes, 1083 marker genes, 458 marker sets)</option> <option value="Patulibacter">Patulibacter (2 genomes, 1012 marker genes, 347 marker sets)</option> <option value="Pectobacterium">Pectobacterium (5 genomes, 1705 marker genes, 291 marker sets)</option> <option value="Pediococcus">Pediococcus (7 genomes, 664 marker genes, 140 marker sets)</option> <option value="Pedobacter">Pedobacter (5 genomes, 742 marker genes, 322 marker sets)</option> <option value="Pelobacter">Pelobacter (2 genomes, 958 marker genes, 487 marker sets)</option> <option value="Pelodictyon">Pelodictyon (2 genomes, 1031 marker genes, 227 marker sets)</option> <option value="Pelosinus">Pelosinus (3 genomes, 1539 marker genes, 333 marker sets)</option> <option value="Peptoniphilus">Peptoniphilus (7 genomes, 533 marker genes, 231 marker sets)</option> <option value="Peptostreptococcus">Peptostreptococcus (3 genomes, 839 marker genes, 240 marker sets)</option> <option value="Persephonella">Persephonella (3 genomes, 1036 marker genes, 256 marker sets)</option> <option value="Phaeobacter">Phaeobacter (8 genomes, 1087 marker genes, 310 marker sets)</option> <option value="Photobacterium">Photobacterium (6 genomes, 1105 marker genes, 326 marker sets)</option> <option value="Photorhabdus">Photorhabdus (3 genomes, 1648 marker genes, 281 marker sets)</option> <option value="Planctomyces">Planctomyces (3 genomes, 790 marker genes, 552 marker sets)</option> <option value="Planktothrix">Planktothrix (6 genomes, 1307 marker genes, 425 marker sets)</option> <option value="Planococcus">Planococcus (2 genomes, 1321 marker genes, 253 marker sets)</option> <option value="Pleomorphomonas">Pleomorphomonas (2 genomes, 1410 marker genes, 316 marker sets)</option> <option value="Pleurocapsa">Pleurocapsa (2 genomes, 1138 marker genes, 783 marker sets)</option> <option value="Polaribacter">Polaribacter (3 genomes, 942 marker genes, 301 marker sets)</option> <option value="Polaromonas">Polaromonas (4 genomes, 1001 marker genes, 336 marker sets)</option> <option value="Polynucleobacter">Polynucleobacter (3 genomes, 968 marker genes, 106 marker sets)</option> <option value="Pontibacillus">Pontibacillus (2 genomes, 1303 marker genes, 324 marker sets)</option> <option value="Pontibacter">Pontibacter (2 genomes, 1139 marker genes, 379 marker sets)</option> <option value="Porphyromonas">Porphyromonas (18 genomes, 569 marker genes, 346 marker sets)</option> <option value="Prevotella">Prevotella (65 genomes, 522 marker genes, 281 marker sets)</option> <option value="Prochlorococcus">Prochlorococcus (18 genomes, 806 marker genes, 240 marker sets)</option> <option value="Promicromonospora">Promicromonospora (2 genomes, 1247 marker genes, 525 marker sets)</option> <option value="Propionibacterium">Propionibacterium (35 genomes, 632 marker genes, 302 marker sets)</option> <option value="Propionimicrobium">Propionimicrobium (2 genomes, 1112 marker genes, 105 marker sets)</option> <option value="Proteus">Proteus (2 genomes, 1888 marker genes, 231 marker sets)</option> <option value="Providencia">Providencia (6 genomes, 1517 marker genes, 302 marker sets)</option> <option value="Pseudanabaena">Pseudanabaena (2 genomes, 1172 marker genes, 781 marker sets)</option> <option value="Pseudoalteromonas">Pseudoalteromonas (20 genomes, 847 marker genes, 396 marker sets)</option> <option value="Pseudobutyrivibrio">Pseudobutyrivibrio (5 genomes, 873 marker genes, 228 marker sets)</option> <option value="Pseudoclavibacter">Pseudoclavibacter (2 genomes, 863 marker genes, 298 marker sets)</option> <option value="Pseudogulbenkiania">Pseudogulbenkiania (3 genomes, 1447 marker genes, 267 marker sets)</option> <option value="Pseudomonas">Pseudomonas (182 genomes, 833 marker genes, 312 marker sets)</option> <option value="Pseudonocardia">Pseudonocardia (4 genomes, 796 marker genes, 343 marker sets)</option> <option value="Pseudovibrio">Pseudovibrio (2 genomes, 1687 marker genes, 338 marker sets)</option> <option value="Pseudoxanthomonas">Pseudoxanthomonas (5 genomes, 1159 marker genes, 369 marker sets)</option> <option value="Psychrobacter">Psychrobacter (6 genomes, 1010 marker genes, 372 marker sets)</option> <option value="Psychroflexus">Psychroflexus (2 genomes, 1118 marker genes, 211 marker sets)</option> <option value="Psychromonas">Psychromonas (5 genomes, 1062 marker genes, 326 marker sets)</option> <option value="Pyrobaculum">Pyrobaculum (6 genomes, 594 marker genes, 217 marker sets)</option> <option value="Pyrococcus">Pyrococcus (6 genomes, 654 marker genes, 266 marker sets)</option> <option value="Rahnella">Rahnella (2 genomes, 1981 marker genes, 296 marker sets)</option> <option value="Ralstonia">Ralstonia (14 genomes, 893 marker genes, 294 marker sets)</option> <option value="Rheinheimera">Rheinheimera (4 genomes, 1282 marker genes, 378 marker sets)</option> <option value="Rhizobium">Rhizobium (40 genomes, 863 marker genes, 345 marker sets)</option> <option value="Rhodanobacter">Rhodanobacter (3 genomes, 1566 marker genes, 246 marker sets)</option> <option value="Rhodobacter">Rhodobacter (8 genomes, 992 marker genes, 372 marker sets)</option> <option value="Rhodococcus">Rhodococcus (14 genomes, 715 marker genes, 302 marker sets)</option> <option value="Rhodonellum">Rhodonellum (2 genomes, 1473 marker genes, 372 marker sets)</option> <option value="Rhodopirellula">Rhodopirellula (3 genomes, 1048 marker genes, 661 marker sets)</option> <option value="Rhodopseudomonas">Rhodopseudomonas (7 genomes, 1180 marker genes, 388 marker sets)</option> <option value="Rhodospirillum">Rhodospirillum (3 genomes, 1208 marker genes, 514 marker sets)</option> <option value="Rhodothermus">Rhodothermus (3 genomes, 1379 marker genes, 216 marker sets)</option> <option value="Rickettsia">Rickettsia (43 genomes, 662 marker genes, 110 marker sets)</option> <option value="Riemerella">Riemerella (6 genomes, 888 marker genes, 396 marker sets)</option> <option value="Roseburia">Roseburia (2 genomes, 975 marker genes, 303 marker sets)</option> <option value="Roseiflexus">Roseiflexus (2 genomes, 1231 marker genes, 441 marker sets)</option> <option value="Roseobacter">Roseobacter (7 genomes, 850 marker genes, 348 marker sets)</option> <option value="Roseomonas">Roseomonas (2 genomes, 1576 marker genes, 318 marker sets)</option> <option value="Roseovarius">Roseovarius (3 genomes, 1134 marker genes, 423 marker sets)</option> <option value="Rothia">Rothia (6 genomes, 884 marker genes, 217 marker sets)</option> <option value="Rubrivivax">Rubrivivax (3 genomes, 1586 marker genes, 343 marker sets)</option> <option value="Rubrobacter">Rubrobacter (2 genomes, 991 marker genes, 269 marker sets)</option> <option value="Ruegeria">Ruegeria (7 genomes, 996 marker genes, 358 marker sets)</option> <option value="Ruminococcus">Ruminococcus (13 genomes, 436 marker genes, 242 marker sets)</option> <option value="Runella">Runella (3 genomes, 1097 marker genes, 525 marker sets)</option> <option value="Saccharibacillus">Saccharibacillus (2 genomes, 1247 marker genes, 331 marker sets)</option> <option value="Saccharomonospora">Saccharomonospora (8 genomes, 788 marker genes, 337 marker sets)</option> <option value="Salinicoccus">Salinicoccus (2 genomes, 1179 marker genes, 206 marker sets)</option> <option value="Salinimicrobium">Salinimicrobium (2 genomes, 1195 marker genes, 260 marker sets)</option> <option value="Salinispora">Salinispora (45 genomes, 1031 marker genes, 284 marker sets)</option> <option value="Salmonella">Salmonella (21 genomes, 1529 marker genes, 266 marker sets)</option> <option value="Saprospira">Saprospira (2 genomes, 1147 marker genes, 326 marker sets)</option> <option value="Sediminibacterium">Sediminibacterium (3 genomes, 992 marker genes, 328 marker sets)</option> <option value="Selenomonas">Selenomonas (21 genomes, 710 marker genes, 294 marker sets)</option> <option value="Serratia">Serratia (13 genomes, 985 marker genes, 293 marker sets)</option> <option value="Shewanella">Shewanella (26 genomes, 989 marker genes, 339 marker sets)</option> <option value="Shigella">Shigella (34 genomes, 1437 marker genes, 348 marker sets)</option> <option value="Slackia">Slackia (4 genomes, 616 marker genes, 193 marker sets)</option> <option value="Solirubrobacter">Solirubrobacter (2 genomes, 995 marker genes, 398 marker sets)</option> <option value="Solobacterium">Solobacterium (2 genomes, 877 marker genes, 170 marker sets)</option> <option value="Sphaerochaeta">Sphaerochaeta (3 genomes, 685 marker genes, 216 marker sets)</option> <option value="Sphingobacterium">Sphingobacterium (2 genomes, 996 marker genes, 521 marker sets)</option> <option value="Sphingobium">Sphingobium (3 genomes, 1179 marker genes, 403 marker sets)</option> <option value="Sphingomonas">Sphingomonas (11 genomes, 713 marker genes, 351 marker sets)</option> <option value="Sphingopyxis">Sphingopyxis (2 genomes, 1195 marker genes, 382 marker sets)</option> <option value="Spirochaeta">Spirochaeta (8 genomes, 487 marker genes, 211 marker sets)</option> <option value="Spirosoma">Spirosoma (4 genomes, 993 marker genes, 460 marker sets)</option> <option value="Sporosarcina">Sporosarcina (3 genomes, 999 marker genes, 269 marker sets)</option> <option value="Staphylococcus">Staphylococcus (60 genomes, 773 marker genes, 178 marker sets)</option> <option value="Staphylothermus">Staphylothermus (2 genomes, 676 marker genes, 104 marker sets)</option> <option value="Stenotrophomonas">Stenotrophomonas (10 genomes, 1276 marker genes, 380 marker sets)</option> <option value="Streptococcus">Streptococcus (226 genomes, 551 marker genes, 259 marker sets)</option> <option value="Streptomyces">Streptomyces (58 genomes, 506 marker genes, 264 marker sets)</option> <option value="Sulfitobacter">Sulfitobacter (4 genomes, 1140 marker genes, 294 marker sets)</option> <option value="Sulfobacillus">Sulfobacillus (3 genomes, 986 marker genes, 278 marker sets)</option> <option value="Sulfolobus">Sulfolobus (15 genomes, 621 marker genes, 152 marker sets)</option> <option value="Sulfurihydrogenibium">Sulfurihydrogenibium (3 genomes, 994 marker genes, 341 marker sets)</option> <option value="Sulfurimonas">Sulfurimonas (3 genomes, 853 marker genes, 245 marker sets)</option> <option value="Sulfurospirillum">Sulfurospirillum (3 genomes, 929 marker genes, 240 marker sets)</option> <option value="Sutterella">Sutterella (3 genomes, 935 marker genes, 232 marker sets)</option> <option value="Synechococcus">Synechococcus (25 genomes, 554 marker genes, 425 marker sets)</option> <option value="Synechocystis">Synechocystis (5 genomes, 1099 marker genes, 794 marker sets)</option> <option value="Tannerella">Tannerella (2 genomes, 822 marker genes, 441 marker sets)</option> <option value="Taylorella">Taylorella (4 genomes, 1069 marker genes, 71 marker sets)</option> <option value="Tenacibaculum">Tenacibaculum (2 genomes, 1057 marker genes, 272 marker sets)</option> <option value="Teredinibacter">Teredinibacter (10 genomes, 1162 marker genes, 360 marker sets)</option> <option value="Tetragenococcus">Tetragenococcus (2 genomes, 953 marker genes, 183 marker sets)</option> <option value="Thalassospira">Thalassospira (3 genomes, 1406 marker genes, 326 marker sets)</option> <option value="Thauera">Thauera (6 genomes, 1175 marker genes, 334 marker sets)</option> <option value="Thermacetogenium">Thermacetogenium (2 genomes, 1344 marker genes, 157 marker sets)</option> <option value="Thermaerobacter">Thermaerobacter (2 genomes, 1204 marker genes, 181 marker sets)</option> <option value="Thermanaerovibrio">Thermanaerovibrio (2 genomes, 1136 marker genes, 117 marker sets)</option> <option value="Thermoanaerobacter">Thermoanaerobacter (13 genomes, 976 marker genes, 195 marker sets)</option> <option value="Thermoanaerobacterium">Thermoanaerobacterium (4 genomes, 1117 marker genes, 147 marker sets)</option> <option value="Thermobifida">Thermobifida (2 genomes, 1421 marker genes, 225 marker sets)</option> <option value="Thermococcus">Thermococcus (9 genomes, 552 marker genes, 286 marker sets)</option> <option value="Thermocrinis">Thermocrinis (2 genomes, 941 marker genes, 515 marker sets)</option> <option value="Thermocrispum">Thermocrispum (2 genomes, 1264 marker genes, 288 marker sets)</option> <option value="Thermodesulfatator">Thermodesulfatator (2 genomes, 1149 marker genes, 333 marker sets)</option> <option value="Thermodesulfobacterium">Thermodesulfobacterium (3 genomes, 960 marker genes, 243 marker sets)</option> <option value="Thermodesulfovibrio">Thermodesulfovibrio (3 genomes, 999 marker genes, 215 marker sets)</option> <option value="Thermogladius">Thermogladius (2 genomes, 711 marker genes, 60 marker sets)</option> <option value="Thermoplasma">Thermoplasma (2 genomes, 733 marker genes, 167 marker sets)</option> <option value="Thermoproteus">Thermoproteus (3 genomes, 600 marker genes, 281 marker sets)</option> <option value="Thermosipho">Thermosipho (2 genomes, 1009 marker genes, 148 marker sets)</option> <option value="Thermotoga">Thermotoga (8 genomes, 768 marker genes, 325 marker sets)</option> <option value="Thermus">Thermus (14 genomes, 841 marker genes, 311 marker sets)</option> <option value="Thioalkalimicrobium">Thioalkalimicrobium (2 genomes, 1175 marker genes, 103 marker sets)</option> <option value="Thioalkalivibrio">Thioalkalivibrio (70 genomes, 1059 marker genes, 270 marker sets)</option> <option value="Thiobacillus">Thiobacillus (3 genomes, 1205 marker genes, 209 marker sets)</option> <option value="Thiomicrospira">Thiomicrospira (8 genomes, 954 marker genes, 243 marker sets)</option> <option value="Thiomonas">Thiomonas (3 genomes, 1202 marker genes, 366 marker sets)</option> <option value="Thiothrix">Thiothrix (4 genomes, 1003 marker genes, 417 marker sets)</option> <option value="Tolumonas">Tolumonas (2 genomes, 1431 marker genes, 200 marker sets)</option> <option value="Treponema">Treponema (28 genomes, 326 marker genes, 173 marker sets)</option> <option value="Turicibacter">Turicibacter (2 genomes, 1183 marker genes, 236 marker sets)</option> <option value="Ureaplasma">Ureaplasma (15 genomes, 372 marker genes, 51 marker sets)</option> <option value="Variovorax">Variovorax (7 genomes, 1114 marker genes, 351 marker sets)</option> <option value="Veillonella">Veillonella (13 genomes, 757 marker genes, 219 marker sets)</option> <option value="Verrucomicrobium">Verrucomicrobium (3 genomes, 697 marker genes, 466 marker sets)</option> <option value="Vibrio">Vibrio (70 genomes, 1084 marker genes, 381 marker sets)</option> <option value="Vulcanisaeta">Vulcanisaeta (2 genomes, 713 marker genes, 173 marker sets)</option> <option value="Weissella">Weissella (6 genomes, 534 marker genes, 171 marker sets)</option> <option value="Wigglesworthia">Wigglesworthia (2 genomes, 679 marker genes, 9 marker sets)</option> <option value="Wohlfahrtiimonas">Wohlfahrtiimonas (2 genomes, 1335 marker genes, 78 marker sets)</option> <option value="Wolbachia">Wolbachia (8 genomes, 427 marker genes, 275 marker sets)</option> <option value="Xanthobacter">Xanthobacter (3 genomes, 1394 marker genes, 374 marker sets)</option> <option value="Xanthomonas">Xanthomonas (16 genomes, 1163 marker genes, 401 marker sets)</option> <option value="Xenorhabdus">Xenorhabdus (2 genomes, 1608 marker genes, 267 marker sets)</option> <option value="Xylella">Xylella (10 genomes, 1207 marker genes, 178 marker sets)</option> <option value="Yersinia">Yersinia (35 genomes, 1383 marker genes, 341 marker sets)</option> <option value="Zymomonas">Zymomonas (3 genomes, 1142 marker genes, 133 marker sets)</option> </param> </when> <when value="species"> <param name="taxon" type="select" label="Taxon of interest" > <option value="Acetobacter pasteurianus">Acetobacter pasteurianus (9 genomes, 1384 marker genes, 160 marker sets)</option> <option value="Achromobacter piechaudii">Achromobacter piechaudii (2 genomes, 1606 marker genes, 428 marker sets)</option> <option value="Achromobacter xylosoxidans">Achromobacter xylosoxidans (2 genomes, 1503 marker genes, 445 marker sets)</option> <option value="Acidaminococcus intestini">Acidaminococcus intestini (2 genomes, 1109 marker genes, 140 marker sets)</option> <option value="Acidithiobacillus caldus">Acidithiobacillus caldus (2 genomes, 1196 marker genes, 153 marker sets)</option> <option value="Acidithiobacillus ferrooxidans">Acidithiobacillus ferrooxidans (2 genomes, 1293 marker genes, 128 marker sets)</option> <option value="Acidovorax avenae">Acidovorax avenae (2 genomes, 1633 marker genes, 327 marker sets)</option> <option value="Acinetobacter baumanni">Acinetobacter baumanni (5 genomes, 1413 marker genes, 231 marker sets)</option> <option value="Acinetobacter baumannii">Acinetobacter baumannii (20 genomes, 1018 marker genes, 298 marker sets)</option> <option value="Acinetobacter baylyi">Acinetobacter baylyi (2 genomes, 1608 marker genes, 195 marker sets)</option> <option value="Acinetobacter calcoaceticus">Acinetobacter calcoaceticus (5 genomes, 1444 marker genes, 252 marker sets)</option> <option value="Acinetobacter johnsonii">Acinetobacter johnsonii (2 genomes, 1439 marker genes, 204 marker sets)</option> <option value="Acinetobacter junii">Acinetobacter junii (4 genomes, 1336 marker genes, 222 marker sets)</option> <option value="Acinetobacter lwoffii">Acinetobacter lwoffii (3 genomes, 1363 marker genes, 221 marker sets)</option> <option value="Acinetobacter nosocomialis">Acinetobacter nosocomialis (2 genomes, 1542 marker genes, 214 marker sets)</option> <option value="Acinetobacter radioresistens">Acinetobacter radioresistens (5 genomes, 1354 marker genes, 199 marker sets)</option> <option value="Actinobacillus pleuropneumoniae">Actinobacillus pleuropneumoniae (13 genomes, 1332 marker genes, 210 marker sets)</option> <option value="Actinobaculum schaalii">Actinobaculum schaalii (2 genomes, 951 marker genes, 128 marker sets)</option> <option value="Actinomyces graevenitzii">Actinomyces graevenitzii (2 genomes, 1014 marker genes, 144 marker sets)</option> <option value="Actinomyces naeslundii">Actinomyces naeslundii (2 genomes, 1068 marker genes, 299 marker sets)</option> <option value="Actinomyces neuii">Actinomyces neuii (2 genomes, 1053 marker genes, 132 marker sets)</option> <option value="Actinomyces odontolyticus">Actinomyces odontolyticus (2 genomes, 1061 marker genes, 179 marker sets)</option> <option value="Aeromonas hydrophila">Aeromonas hydrophila (3 genomes, 1847 marker genes, 312 marker sets)</option> <option value="Aeromonas veronii">Aeromonas veronii (6 genomes, 1752 marker genes, 329 marker sets)</option> <option value="Aggregatibacter actinomycetemcomitans">Aggregatibacter actinomycetemcomitans (10 genomes, 1164 marker genes, 217 marker sets)</option> <option value="Agrobacterium tumefaciens">Agrobacterium tumefaciens (2 genomes, 1574 marker genes, 278 marker sets)</option> <option value="Alicycliphilus denitrificans">Alicycliphilus denitrificans (2 genomes, 1650 marker genes, 258 marker sets)</option> <option value="Alicyclobacillus acidocaldarius">Alicyclobacillus acidocaldarius (2 genomes, 1329 marker genes, 157 marker sets)</option> <option value="Alloscardovia omnicolens">Alloscardovia omnicolens (2 genomes, 950 marker genes, 116 marker sets)</option> <option value="Alteromonas macleodii">Alteromonas macleodii (4 genomes, 1539 marker genes, 274 marker sets)</option> <option value="Amycolatopsis mediterranei">Amycolatopsis mediterranei (3 genomes, 1557 marker genes, 526 marker sets)</option> <option value="Anabaena circinalis">Anabaena circinalis (2 genomes, 1357 marker genes, 362 marker sets)</option> <option value="Anaerococcus prevotii">Anaerococcus prevotii (2 genomes, 900 marker genes, 143 marker sets)</option> <option value="Anaeromyxobacter dehalogenans">Anaeromyxobacter dehalogenans (2 genomes, 1441 marker genes, 335 marker sets)</option> <option value="Anoxybacillus flavithermus">Anoxybacillus flavithermus (2 genomes, 1366 marker genes, 163 marker sets)</option> <option value="Archaeoglobus fulgidus">Archaeoglobus fulgidus (2 genomes, 975 marker genes, 111 marker sets)</option> <option value="Arcobacter butzleri">Arcobacter butzleri (4 genomes, 1067 marker genes, 144 marker sets)</option> <option value="Arthrobacter nicotinovorans">Arthrobacter nicotinovorans (2 genomes, 1382 marker genes, 287 marker sets)</option> <option value="Arthrospira platensis">Arthrospira platensis (2 genomes, 1432 marker genes, 419 marker sets)</option> <option value="Atopobium vaginae">Atopobium vaginae (2 genomes, 714 marker genes, 165 marker sets)</option> <option value="Azotobacter vinelandii">Azotobacter vinelandii (3 genomes, 1930 marker genes, 269 marker sets)</option> <option value="Bacillus amyloliquefaciens">Bacillus amyloliquefaciens (9 genomes, 1568 marker genes, 226 marker sets)</option> <option value="Bacillus anthracis">Bacillus anthracis (11 genomes, 1465 marker genes, 354 marker sets)</option> <option value="Bacillus cereus">Bacillus cereus (20 genomes, 1114 marker genes, 319 marker sets)</option> <option value="Bacillus coagulans">Bacillus coagulans (4 genomes, 1365 marker genes, 245 marker sets)</option> <option value="Bacillus licheniformis">Bacillus licheniformis (4 genomes, 1711 marker genes, 246 marker sets)</option> <option value="Bacillus megaterium">Bacillus megaterium (3 genomes, 1495 marker genes, 292 marker sets)</option> <option value="Bacillus methanolicus">Bacillus methanolicus (2 genomes, 1444 marker genes, 206 marker sets)</option> <option value="Bacillus pumilus">Bacillus pumilus (2 genomes, 1707 marker genes, 218 marker sets)</option> <option value="Bacillus subtilis">Bacillus subtilis (14 genomes, 1489 marker genes, 247 marker sets)</option> <option value="Bacillus thuringiensis">Bacillus thuringiensis (11 genomes, 1205 marker genes, 357 marker sets)</option> <option value="Bacteroides caccae">Bacteroides caccae (2 genomes, 1239 marker genes, 256 marker sets)</option> <option value="Bacteroides dorei">Bacteroides dorei (4 genomes, 1172 marker genes, 271 marker sets)</option> <option value="Bacteroides eggerthii">Bacteroides eggerthii (2 genomes, 1171 marker genes, 205 marker sets)</option> <option value="Bacteroides fragilis">Bacteroides fragilis (10 genomes, 1128 marker genes, 303 marker sets)</option> <option value="Bacteroides massiliensis">Bacteroides massiliensis (2 genomes, 1340 marker genes, 274 marker sets)</option> <option value="Bacteroides ovatus">Bacteroides ovatus (6 genomes, 1115 marker genes, 317 marker sets)</option> <option value="Bacteroides stercoris">Bacteroides stercoris (2 genomes, 1202 marker genes, 210 marker sets)</option> <option value="Bacteroides thetaiotaomicron">Bacteroides thetaiotaomicron (6 genomes, 1177 marker genes, 313 marker sets)</option> <option value="Bacteroides uniformis">Bacteroides uniformis (2 genomes, 1214 marker genes, 253 marker sets)</option> <option value="Bacteroides vulgatus">Bacteroides vulgatus (5 genomes, 1162 marker genes, 307 marker sets)</option> <option value="Bacteroides xylanisolvens">Bacteroides xylanisolvens (12 genomes, 1025 marker genes, 325 marker sets)</option> <option value="Bankia setacea">Bankia setacea (2 genomes, 1388 marker genes, 332 marker sets)</option> <option value="Bartonella clarridgeiae">Bartonella clarridgeiae (2 genomes, 990 marker genes, 52 marker sets)</option> <option value="Bartonella doshiae">Bartonella doshiae (2 genomes, 1022 marker genes, 73 marker sets)</option> <option value="Bartonella elizabethae">Bartonella elizabethae (3 genomes, 1021 marker genes, 88 marker sets)</option> <option value="Bartonella grahamii">Bartonella grahamii (2 genomes, 1010 marker genes, 95 marker sets)</option> <option value="Bartonella quintana">Bartonella quintana (2 genomes, 945 marker genes, 55 marker sets)</option> <option value="Bartonella tamiae">Bartonella tamiae (2 genomes, 1379 marker genes, 94 marker sets)</option> <option value="Bartonella vinsonii">Bartonella vinsonii (4 genomes, 964 marker genes, 71 marker sets)</option> <option value="Bartonella washoensis">Bartonella washoensis (2 genomes, 1014 marker genes, 79 marker sets)</option> <option value="Bdellovibrio bacteriovorus">Bdellovibrio bacteriovorus (2 genomes, 1015 marker genes, 305 marker sets)</option> <option value="Bifidobacterium adolescentis">Bifidobacterium adolescentis (3 genomes, 886 marker genes, 116 marker sets)</option> <option value="Bifidobacterium animalis">Bifidobacterium animalis (9 genomes, 871 marker genes, 113 marker sets)</option> <option value="Bifidobacterium bifidum">Bifidobacterium bifidum (5 genomes, 952 marker genes, 140 marker sets)</option> <option value="Bifidobacterium breve">Bifidobacterium breve (6 genomes, 871 marker genes, 166 marker sets)</option> <option value="Bifidobacterium dentium">Bifidobacterium dentium (3 genomes, 991 marker genes, 156 marker sets)</option> <option value="Bifidobacterium longum">Bifidobacterium longum (15 genomes, 750 marker genes, 214 marker sets)</option> <option value="Bifidobacterium pseudolongum">Bifidobacterium pseudolongum (2 genomes, 933 marker genes, 123 marker sets)</option> <option value="Blautia producta">Blautia producta (2 genomes, 1444 marker genes, 376 marker sets)</option> <option value="Blautia wexlerae">Blautia wexlerae (2 genomes, 1092 marker genes, 270 marker sets)</option> <option value="Bordetella holmesii">Bordetella holmesii (2 genomes, 1523 marker genes, 215 marker sets)</option> <option value="Bordetella pertussis">Bordetella pertussis (2 genomes, 1599 marker genes, 225 marker sets)</option> <option value="Borrelia afzelii">Borrelia afzelii (2 genomes, 598 marker genes, 23 marker sets)</option> <option value="Borrelia burgdorferi">Borrelia burgdorferi (7 genomes, 567 marker genes, 36 marker sets)</option> <option value="Borrelia garinii">Borrelia garinii (3 genomes, 596 marker genes, 51 marker sets)</option> <option value="Brachyspira hyodysenteriae">Brachyspira hyodysenteriae (2 genomes, 1143 marker genes, 201 marker sets)</option> <option value="Brachyspira pilosicoli">Brachyspira pilosicoli (4 genomes, 951 marker genes, 213 marker sets)</option> <option value="Bradyrhizobium elkanii">Bradyrhizobium elkanii (6 genomes, 1117 marker genes, 415 marker sets)</option> <option value="Bradyrhizobium japonicum">Bradyrhizobium japonicum (9 genomes, 1153 marker genes, 389 marker sets)</option> <option value="Brevibacillus laterosporus">Brevibacillus laterosporus (2 genomes, 1538 marker genes, 311 marker sets)</option> <option value="Brucella abortus">Brucella abortus (20 genomes, 1513 marker genes, 206 marker sets)</option> <option value="Brucella canis">Brucella canis (7 genomes, 1561 marker genes, 163 marker sets)</option> <option value="Brucella ceti">Brucella ceti (4 genomes, 1586 marker genes, 299 marker sets)</option> <option value="Brucella melitensis">Brucella melitensis (20 genomes, 1435 marker genes, 270 marker sets)</option> <option value="Brucella ovis">Brucella ovis (9 genomes, 1599 marker genes, 181 marker sets)</option> <option value="Brucella pinnipedialis">Brucella pinnipedialis (2 genomes, 1625 marker genes, 189 marker sets)</option> <option value="Brucella suis">Brucella suis (16 genomes, 1524 marker genes, 276 marker sets)</option> <option value="Buchnera aphidicola">Buchnera aphidicola (10 genomes, 380 marker genes, 35 marker sets)</option> <option value="Burkholderia cenocepacia">Burkholderia cenocepacia (5 genomes, 1585 marker genes, 398 marker sets)</option> <option value="Burkholderia cepacia">Burkholderia cepacia (5 genomes, 1353 marker genes, 330 marker sets)</option> <option value="Burkholderia mallei">Burkholderia mallei (9 genomes, 1503 marker genes, 397 marker sets)</option> <option value="Burkholderia mimosarum">Burkholderia mimosarum (2 genomes, 1813 marker genes, 442 marker sets)</option> <option value="Burkholderia multivorans">Burkholderia multivorans (4 genomes, 1688 marker genes, 361 marker sets)</option> <option value="Burkholderia pseudomallei">Burkholderia pseudomallei (12 genomes, 1626 marker genes, 455 marker sets)</option> <option value="Butyrivibrio fibrisolvens">Butyrivibrio fibrisolvens (4 genomes, 1083 marker genes, 302 marker sets)</option> <option value="Butyrivibrio proteoclasticus">Butyrivibrio proteoclasticus (2 genomes, 1016 marker genes, 327 marker sets)</option> <option value="Caldicellulosiruptor kristjanssonii">Caldicellulosiruptor kristjanssonii (3 genomes, 1326 marker genes, 159 marker sets)</option> <option value="Campylobacter coli">Campylobacter coli (20 genomes, 955 marker genes, 188 marker sets)</option> <option value="Campylobacter curvus">Campylobacter curvus (2 genomes, 1090 marker genes, 92 marker sets)</option> <option value="Campylobacter fetus">Campylobacter fetus (2 genomes, 1143 marker genes, 80 marker sets)</option> <option value="Campylobacter jejuni">Campylobacter jejuni (20 genomes, 903 marker genes, 161 marker sets)</option> <option value="Campylobacter showae">Campylobacter showae (2 genomes, 1098 marker genes, 118 marker sets)</option> <option value="Campylobacter upsaliensis">Campylobacter upsaliensis (3 genomes, 1032 marker genes, 103 marker sets)</option> <option value="Candidatus Pelagibacter ubique">Candidatus Pelagibacter ubique (10 genomes, 779 marker genes, 128 marker sets)</option> <option value="Candidatus Pelagibacter-like SAR11">Candidatus Pelagibacter-like SAR11 (3 genomes, 911 marker genes, 76 marker sets)</option> <option value="Capnocytophaga ochracea">Capnocytophaga ochracea (3 genomes, 1077 marker genes, 205 marker sets)</option> <option value="Caulobacter crescentus">Caulobacter crescentus (2 genomes, 1670 marker genes, 221 marker sets)</option> <option value="Cellulomonas flavigena">Cellulomonas flavigena (2 genomes, 1110 marker genes, 325 marker sets)</option> <option value="Chlamydia muridarum">Chlamydia muridarum (3 genomes, 683 marker genes, 35 marker sets)</option> <option value="Chlamydia psittaci">Chlamydia psittaci (20 genomes, 613 marker genes, 74 marker sets)</option> <option value="Chlamydia trachomatis">Chlamydia trachomatis (20 genomes, 641 marker genes, 41 marker sets)</option> <option value="Chlamydophila pneumoniae">Chlamydophila pneumoniae (5 genomes, 683 marker genes, 57 marker sets)</option> <option value="Chlamydophila psittaci">Chlamydophila psittaci (7 genomes, 706 marker genes, 40 marker sets)</option> <option value="Chlorobium phaeobacteroides">Chlorobium phaeobacteroides (2 genomes, 1081 marker genes, 255 marker sets)</option> <option value="Citrobacter freundii">Citrobacter freundii (3 genomes, 1937 marker genes, 327 marker sets)</option> <option value="Clavibacter michiganensis">Clavibacter michiganensis (2 genomes, 1152 marker genes, 228 marker sets)</option> <option value="Clostridium acetobutylicum">Clostridium acetobutylicum (3 genomes, 1498 marker genes, 242 marker sets)</option> <option value="Clostridium beijerinckii">Clostridium beijerinckii (2 genomes, 1312 marker genes, 318 marker sets)</option> <option value="Clostridium bolteae">Clostridium bolteae (5 genomes, 1147 marker genes, 316 marker sets)</option> <option value="Clostridium botulinum">Clostridium botulinum (15 genomes, 653 marker genes, 197 marker sets)</option> <option value="Clostridium butyricum">Clostridium butyricum (3 genomes, 1300 marker genes, 285 marker sets)</option> <option value="Clostridium clariflavum">Clostridium clariflavum (2 genomes, 1344 marker genes, 273 marker sets)</option> <option value="Clostridium clostridioforme">Clostridium clostridioforme (7 genomes, 995 marker genes, 304 marker sets)</option> <option value="Clostridium difficile">Clostridium difficile (20 genomes, 1098 marker genes, 329 marker sets)</option> <option value="Clostridium glycolicum">Clostridium glycolicum (2 genomes, 1385 marker genes, 238 marker sets)</option> <option value="Clostridium kluyveri">Clostridium kluyveri (2 genomes, 1377 marker genes, 212 marker sets)</option> <option value="Clostridium pasteurianum">Clostridium pasteurianum (2 genomes, 1184 marker genes, 276 marker sets)</option> <option value="Clostridium perfringens">Clostridium perfringens (3 genomes, 1152 marker genes, 185 marker sets)</option> <option value="Clostridium sporogenes">Clostridium sporogenes (2 genomes, 1302 marker genes, 242 marker sets)</option> <option value="Clostridium symbiosum">Clostridium symbiosum (2 genomes, 1222 marker genes, 322 marker sets)</option> <option value="Clostridium thermocellum">Clostridium thermocellum (5 genomes, 1325 marker genes, 239 marker sets)</option> <option value="Comamonas testosteroni">Comamonas testosteroni (3 genomes, 1563 marker genes, 349 marker sets)</option> <option value="Corynebacterium accolens">Corynebacterium accolens (2 genomes, 1192 marker genes, 206 marker sets)</option> <option value="Corynebacterium aurimucosum">Corynebacterium aurimucosum (2 genomes, 1240 marker genes, 186 marker sets)</option> <option value="Corynebacterium diphtheriae">Corynebacterium diphtheriae (15 genomes, 1041 marker genes, 134 marker sets)</option> <option value="Corynebacterium efficiens">Corynebacterium efficiens (2 genomes, 1320 marker genes, 210 marker sets)</option> <option value="Corynebacterium glucuronolyticum">Corynebacterium glucuronolyticum (3 genomes, 1217 marker genes, 176 marker sets)</option> <option value="Corynebacterium glutamicum">Corynebacterium glutamicum (6 genomes, 1184 marker genes, 228 marker sets)</option> <option value="Corynebacterium halotolerans">Corynebacterium halotolerans (2 genomes, 1353 marker genes, 183 marker sets)</option> <option value="Corynebacterium jeikeium">Corynebacterium jeikeium (2 genomes, 1143 marker genes, 157 marker sets)</option> <option value="Corynebacterium matruchotii">Corynebacterium matruchotii (2 genomes, 1191 marker genes, 181 marker sets)</option> <option value="Corynebacterium pseudotuberculosis">Corynebacterium pseudotuberculosis (14 genomes, 1001 marker genes, 123 marker sets)</option> <option value="Corynebacterium ulcerans">Corynebacterium ulcerans (3 genomes, 1221 marker genes, 112 marker sets)</option> <option value="Corynebacterium urealyticum">Corynebacterium urealyticum (2 genomes, 1146 marker genes, 117 marker sets)</option> <option value="Coxiella burnetii">Coxiella burnetii (5 genomes, 1047 marker genes, 146 marker sets)</option> <option value="Cupriavidus metallidurans">Cupriavidus metallidurans (2 genomes, 1706 marker genes, 419 marker sets)</option> <option value="Cupriavidus necator">Cupriavidus necator (2 genomes, 1517 marker genes, 379 marker sets)</option> <option value="Cupriavidus taiwanensis">Cupriavidus taiwanensis (3 genomes, 1681 marker genes, 365 marker sets)</option> <option value="Dechloromonas agitata">Dechloromonas agitata (2 genomes, 1533 marker genes, 220 marker sets)</option> <option value="Dehalococcoides mccartyi">Dehalococcoides mccartyi (4 genomes, 803 marker genes, 50 marker sets)</option> <option value="Deinococcus radiodurans">Deinococcus radiodurans (2 genomes, 1383 marker genes, 206 marker sets)</option> <option value="Delftia acidovorans">Delftia acidovorans (2 genomes, 1757 marker genes, 421 marker sets)</option> <option value="Desulfovibrio africanus">Desulfovibrio africanus (3 genomes, 1285 marker genes, 284 marker sets)</option> <option value="Desulfovibrio alaskensis">Desulfovibrio alaskensis (2 genomes, 1327 marker genes, 223 marker sets)</option> <option value="Desulfovibrio desulfuricans">Desulfovibrio desulfuricans (2 genomes, 941 marker genes, 423 marker sets)</option> <option value="Desulfovibrio vulgaris">Desulfovibrio vulgaris (3 genomes, 1187 marker genes, 344 marker sets)</option> <option value="Dickeya dadantii">Dickeya dadantii (3 genomes, 1728 marker genes, 307 marker sets)</option> <option value="Dorea longicatena">Dorea longicatena (2 genomes, 1005 marker genes, 208 marker sets)</option> <option value="Edwardsiella tarda">Edwardsiella tarda (2 genomes, 1903 marker genes, 174 marker sets)</option> <option value="Ehrlichia ruminantium">Ehrlichia ruminantium (3 genomes, 760 marker genes, 58 marker sets)</option> <option value="Elizabethkingia anophelis">Elizabethkingia anophelis (3 genomes, 1251 marker genes, 240 marker sets)</option> <option value="Ensifer fredii">Ensifer fredii (2 genomes, 1548 marker genes, 357 marker sets)</option> <option value="Ensifer medicae">Ensifer medicae (5 genomes, 1601 marker genes, 343 marker sets)</option> <option value="Ensifer meliloti">Ensifer meliloti (15 genomes, 1320 marker genes, 381 marker sets)</option> <option value="Enterobacter aerogenes">Enterobacter aerogenes (2 genomes, 2126 marker genes, 298 marker sets)</option> <option value="Enterobacter cloacae">Enterobacter cloacae (6 genomes, 1787 marker genes, 306 marker sets)</option> <option value="Enterococcus casseliflavus">Enterococcus casseliflavus (4 genomes, 1174 marker genes, 221 marker sets)</option> <option value="Enterococcus faecalis">Enterococcus faecalis (20 genomes, 792 marker genes, 298 marker sets)</option> <option value="Enterococcus faecium">Enterococcus faecium (20 genomes, 885 marker genes, 257 marker sets)</option> <option value="Enterococcus gallinarum">Enterococcus gallinarum (2 genomes, 1257 marker genes, 191 marker sets)</option> <option value="Eremococcus coleocola">Eremococcus coleocola (2 genomes, 922 marker genes, 109 marker sets)</option> <option value="Erwinia amylovora">Erwinia amylovora (3 genomes, 1878 marker genes, 177 marker sets)</option> <option value="Erwinia pyrifoliae">Erwinia pyrifoliae (2 genomes, 1942 marker genes, 184 marker sets)</option> <option value="Escherichia coli">Escherichia coli (20 genomes, 1628 marker genes, 307 marker sets)</option> <option value="Escherichia fergusonii">Escherichia fergusonii (2 genomes, 2134 marker genes, 277 marker sets)</option> <option value="Eubacterium cellulosolvens">Eubacterium cellulosolvens (2 genomes, 1078 marker genes, 198 marker sets)</option> <option value="Eubacterium saburreum">Eubacterium saburreum (2 genomes, 1186 marker genes, 223 marker sets)</option> <option value="Exiguobacterium sibiricum">Exiguobacterium sibiricum (2 genomes, 1429 marker genes, 175 marker sets)</option> <option value="Exiguobacterium undae">Exiguobacterium undae (2 genomes, 1484 marker genes, 173 marker sets)</option> <option value="Facklamia hominis">Facklamia hominis (2 genomes, 955 marker genes, 100 marker sets)</option> <option value="Finegoldia magna">Finegoldia magna (5 genomes, 878 marker genes, 111 marker sets)</option> <option value="Francisella noatunensis">Francisella noatunensis (6 genomes, 904 marker genes, 235 marker sets)</option> <option value="Francisella noatunensis noatunensis">Francisella noatunensis noatunensis (2 genomes, 1070 marker genes, 209 marker sets)</option> <option value="Francisella novicida">Francisella novicida (4 genomes, 1052 marker genes, 152 marker sets)</option> <option value="Francisella philomiragia">Francisella philomiragia (6 genomes, 1127 marker genes, 132 marker sets)</option> <option value="Francisella tularensis">Francisella tularensis (20 genomes, 850 marker genes, 176 marker sets)</option> <option value="Fusobacterium necrophorum">Fusobacterium necrophorum (2 genomes, 1080 marker genes, 117 marker sets)</option> <option value="Fusobacterium nucleatum">Fusobacterium nucleatum (6 genomes, 884 marker genes, 256 marker sets)</option> <option value="Gallibacterium anatis">Gallibacterium anatis (2 genomes, 1519 marker genes, 168 marker sets)</option> <option value="Gardnerella vaginalis">Gardnerella vaginalis (14 genomes, 621 marker genes, 237 marker sets)</option> <option value="Gemella haemolysans">Gemella haemolysans (2 genomes, 961 marker genes, 126 marker sets)</option> <option value="Geobacillus debilis">Geobacillus debilis (2 genomes, 1380 marker genes, 195 marker sets)</option> <option value="Geobacter sulfurreducens">Geobacter sulfurreducens (2 genomes, 1487 marker genes, 199 marker sets)</option> <option value="Glaciecola agarilytica">Glaciecola agarilytica (2 genomes, 1802 marker genes, 312 marker sets)</option> <option value="Gluconacetobacter diazotrophicus">Gluconacetobacter diazotrophicus (2 genomes, 1506 marker genes, 190 marker sets)</option> <option value="Gordonia amicalis">Gordonia amicalis (2 genomes, 1448 marker genes, 324 marker sets)</option> <option value="Gordonia polyisoprenivorans">Gordonia polyisoprenivorans (3 genomes, 1452 marker genes, 366 marker sets)</option> <option value="Haemophilus ducreyi">Haemophilus ducreyi (4 genomes, 1128 marker genes, 128 marker sets)</option> <option value="Haemophilus haemolyticus">Haemophilus haemolyticus (3 genomes, 1281 marker genes, 149 marker sets)</option> <option value="Haemophilus influenzae">Haemophilus influenzae (17 genomes, 924 marker genes, 157 marker sets)</option> <option value="Haemophilus parainfluenzae">Haemophilus parainfluenzae (5 genomes, 1176 marker genes, 631 marker sets)</option> <option value="Haemophilus parasuis">Haemophilus parasuis (2 genomes, 1385 marker genes, 136 marker sets)</option> <option value="Halalkalicoccus jeotgali">Halalkalicoccus jeotgali (2 genomes, 1003 marker genes, 212 marker sets)</option> <option value="Haloarcula californiae">Haloarcula californiae (2 genomes, 1047 marker genes, 260 marker sets)</option> <option value="Haloarcula vallismortis">Haloarcula vallismortis (2 genomes, 1075 marker genes, 244 marker sets)</option> <option value="Halobiforma lacisalsi">Halobiforma lacisalsi (2 genomes, 1026 marker genes, 320 marker sets)</option> <option value="Haloferax denitrificans">Haloferax denitrificans (2 genomes, 1052 marker genes, 231 marker sets)</option> <option value="Haloferax mucosum">Haloferax mucosum (2 genomes, 1030 marker genes, 193 marker sets)</option> <option value="Haloferax sulfurifontis">Haloferax sulfurifontis (2 genomes, 1054 marker genes, 237 marker sets)</option> <option value="Haloferax volcanii">Haloferax volcanii (3 genomes, 864 marker genes, 230 marker sets)</option> <option value="Haloquadratum walsbyi">Haloquadratum walsbyi (3 genomes, 798 marker genes, 192 marker sets)</option> <option value="Helicobacter cetorum">Helicobacter cetorum (2 genomes, 927 marker genes, 162 marker sets)</option> <option value="Helicobacter pylori">Helicobacter pylori (20 genomes, 773 marker genes, 143 marker sets)</option> <option value="Histophilus somni">Histophilus somni (2 genomes, 1341 marker genes, 98 marker sets)</option> <option value="Hydrogenobacter thermophilus">Hydrogenobacter thermophilus (2 genomes, 1116 marker genes, 52 marker sets)</option> <option value="Hyphomicrobium denitrificans">Hyphomicrobium denitrificans (2 genomes, 1390 marker genes, 196 marker sets)</option> <option value="Isoptericola variabilis">Isoptericola variabilis (2 genomes, 1351 marker genes, 168 marker sets)</option> <option value="Jonquetella anthropi">Jonquetella anthropi (2 genomes, 987 marker genes, 78 marker sets)</option> <option value="Kandleria vitulina">Kandleria vitulina (3 genomes, 1026 marker genes, 154 marker sets)</option> <option value="Klebsiella oxytoca">Klebsiella oxytoca (5 genomes, 1725 marker genes, 377 marker sets)</option> <option value="Klebsiella pneumoniae">Klebsiella pneumoniae (20 genomes, 1598 marker genes, 383 marker sets)</option> <option value="Lachnobacterium bovis">Lachnobacterium bovis (2 genomes, 1164 marker genes, 173 marker sets)</option> <option value="Lachnospira multipara">Lachnospira multipara (3 genomes, 1045 marker genes, 196 marker sets)</option> <option value="Lactobacillus acidophilus">Lactobacillus acidophilus (3 genomes, 800 marker genes, 127 marker sets)</option> <option value="Lactobacillus amylovorus">Lactobacillus amylovorus (2 genomes, 865 marker genes, 112 marker sets)</option> <option value="Lactobacillus brevis">Lactobacillus brevis (4 genomes, 752 marker genes, 203 marker sets)</option> <option value="Lactobacillus buchneri">Lactobacillus buchneri (5 genomes, 853 marker genes, 186 marker sets)</option> <option value="Lactobacillus casei">Lactobacillus casei (16 genomes, 772 marker genes, 222 marker sets)</option> <option value="Lactobacillus crispatus">Lactobacillus crispatus (8 genomes, 762 marker genes, 178 marker sets)</option> <option value="Lactobacillus delbrueckii">Lactobacillus delbrueckii (7 genomes, 742 marker genes, 159 marker sets)</option> <option value="Lactobacillus fermentum">Lactobacillus fermentum (3 genomes, 949 marker genes, 129 marker sets)</option> <option value="Lactobacillus gasseri">Lactobacillus gasseri (5 genomes, 692 marker genes, 131 marker sets)</option> <option value="Lactobacillus helveticus">Lactobacillus helveticus (4 genomes, 731 marker genes, 148 marker sets)</option> <option value="Lactobacillus iners">Lactobacillus iners (15 genomes, 639 marker genes, 125 marker sets)</option> <option value="Lactobacillus jensenii">Lactobacillus jensenii (5 genomes, 813 marker genes, 106 marker sets)</option> <option value="Lactobacillus johnsonii">Lactobacillus johnsonii (4 genomes, 777 marker genes, 130 marker sets)</option> <option value="Lactobacillus paracasei">Lactobacillus paracasei (3 genomes, 1022 marker genes, 225 marker sets)</option> <option value="Lactobacillus reuteri">Lactobacillus reuteri (9 genomes, 829 marker genes, 185 marker sets)</option> <option value="Lactobacillus rhamnosus">Lactobacillus rhamnosus (10 genomes, 952 marker genes, 246 marker sets)</option> <option value="Lactobacillus ruminis">Lactobacillus ruminis (2 genomes, 989 marker genes, 143 marker sets)</option> <option value="Lactobacillus salivarius">Lactobacillus salivarius (5 genomes, 864 marker genes, 162 marker sets)</option> <option value="Lactococcus garvieae">Lactococcus garvieae (4 genomes, 927 marker genes, 157 marker sets)</option> <option value="Lactococcus lactis">Lactococcus lactis (10 genomes, 856 marker genes, 190 marker sets)</option> <option value="Laribacter hongkongensis">Laribacter hongkongensis (2 genomes, 1579 marker genes, 150 marker sets)</option> <option value="Legionella longbeachae">Legionella longbeachae (2 genomes, 1434 marker genes, 256 marker sets)</option> <option value="Legionella pneumophila">Legionella pneumophila (8 genomes, 1140 marker genes, 213 marker sets)</option> <option value="Legionella sainthelensi">Legionella sainthelensi (2 genomes, 1272 marker genes, 299 marker sets)</option> <option value="Leptospira meyeri">Leptospira meyeri (2 genomes, 1272 marker genes, 278 marker sets)</option> <option value="Leptotrichia goodfellowii">Leptotrichia goodfellowii (2 genomes, 1086 marker genes, 182 marker sets)</option> <option value="Leuconostoc citreum">Leuconostoc citreum (4 genomes, 908 marker genes, 102 marker sets)</option> <option value="Leuconostoc gelidum">Leuconostoc gelidum (2 genomes, 985 marker genes, 105 marker sets)</option> <option value="Leuconostoc kimchii">Leuconostoc kimchii (2 genomes, 990 marker genes, 97 marker sets)</option> <option value="Leuconostoc mesenteroides">Leuconostoc mesenteroides (3 genomes, 870 marker genes, 110 marker sets)</option> <option value="Listeria monocytogenes">Listeria monocytogenes (20 genomes, 1262 marker genes, 179 marker sets)</option> <option value="Loktanella vestfoldensis">Loktanella vestfoldensis (2 genomes, 1360 marker genes, 189 marker sets)</option> <option value="Lysinibacillus fusiformis">Lysinibacillus fusiformis (2 genomes, 1610 marker genes, 299 marker sets)</option> <option value="Mannheimia haemolytica">Mannheimia haemolytica (3 genomes, 1446 marker genes, 156 marker sets)</option> <option value="Mariprofundus ferrooxydans">Mariprofundus ferrooxydans (2 genomes, 1329 marker genes, 184 marker sets)</option> <option value="Megasphaera elsdenii">Megasphaera elsdenii (2 genomes, 1168 marker genes, 145 marker sets)</option> <option value="Megasphaera genomosp.">Megasphaera genomosp. (2 genomes, 973 marker genes, 196 marker sets)</option> <option value="Mesorhizobium ciceri">Mesorhizobium ciceri (3 genomes, 1605 marker genes, 386 marker sets)</option> <option value="Mesorhizobium loti">Mesorhizobium loti (6 genomes, 1317 marker genes, 375 marker sets)</option> <option value="Methanobrevibacter smithii">Methanobrevibacter smithii (3 genomes, 932 marker genes, 82 marker sets)</option> <option value="Methanococcus maripaludis">Methanococcus maripaludis (4 genomes, 961 marker genes, 83 marker sets)</option> <option value="Methylobacterium extorquens">Methylobacterium extorquens (4 genomes, 1402 marker genes, 302 marker sets)</option> <option value="Methylococcus capsulatus">Methylococcus capsulatus (2 genomes, 1613 marker genes, 188 marker sets)</option> <option value="Methylotenera mobilis">Methylotenera mobilis (2 genomes, 1353 marker genes, 143 marker sets)</option> <option value="Methylotenera versatilis">Methylotenera versatilis (2 genomes, 1251 marker genes, 231 marker sets)</option> <option value="Methyloversatilis universalis">Methyloversatilis universalis (3 genomes, 1615 marker genes, 262 marker sets)</option> <option value="Mobiluncus curtisii">Mobiluncus curtisii (4 genomes, 1009 marker genes, 115 marker sets)</option> <option value="Mobiluncus mulieris">Mobiluncus mulieris (4 genomes, 980 marker genes, 165 marker sets)</option> <option value="Moraxella catarrhalis">Moraxella catarrhalis (8 genomes, 1131 marker genes, 113 marker sets)</option> <option value="Mycobacterium abscessus">Mycobacterium abscessus (20 genomes, 1230 marker genes, 333 marker sets)</option> <option value="Mycobacterium avium">Mycobacterium avium (3 genomes, 1306 marker genes, 324 marker sets)</option> <option value="Mycobacterium bovis">Mycobacterium bovis (4 genomes, 1386 marker genes, 231 marker sets)</option> <option value="Mycobacterium canettii">Mycobacterium canettii (4 genomes, 1378 marker genes, 260 marker sets)</option> <option value="Mycobacterium gilvum">Mycobacterium gilvum (2 genomes, 1474 marker genes, 320 marker sets)</option> <option value="Mycobacterium intracellulare">Mycobacterium intracellulare (3 genomes, 1375 marker genes, 278 marker sets)</option> <option value="Mycobacterium leprae">Mycobacterium leprae (2 genomes, 1053 marker genes, 195 marker sets)</option> <option value="Mycobacterium marinum">Mycobacterium marinum (2 genomes, 1415 marker genes, 358 marker sets)</option> <option value="Mycobacterium massiliense">Mycobacterium massiliense (11 genomes, 1291 marker genes, 291 marker sets)</option> <option value="Mycobacterium rhodesiae">Mycobacterium rhodesiae (2 genomes, 1202 marker genes, 411 marker sets)</option> <option value="Mycobacterium smegmatis">Mycobacterium smegmatis (2 genomes, 1151 marker genes, 407 marker sets)</option> <option value="Mycobacterium tuberculosis">Mycobacterium tuberculosis (20 genomes, 1077 marker genes, 383 marker sets)</option> <option value="Mycoplasma agalactiae">Mycoplasma agalactiae (2 genomes, 457 marker genes, 44 marker sets)</option> <option value="Mycoplasma arginini">Mycoplasma arginini (2 genomes, 361 marker genes, 170 marker sets)</option> <option value="Mycoplasma bovis">Mycoplasma bovis (3 genomes, 447 marker genes, 52 marker sets)</option> <option value="Mycoplasma canis">Mycoplasma canis (5 genomes, 460 marker genes, 37 marker sets)</option> <option value="Mycoplasma fermentans">Mycoplasma fermentans (2 genomes, 506 marker genes, 49 marker sets)</option> <option value="Mycoplasma gallisepticum">Mycoplasma gallisepticum (12 genomes, 451 marker genes, 45 marker sets)</option> <option value="Mycoplasma genitalium">Mycoplasma genitalium (2 genomes, 435 marker genes, 21 marker sets)</option> <option value="Mycoplasma hominis">Mycoplasma hominis (2 genomes, 411 marker genes, 42 marker sets)</option> <option value="Mycoplasma hyopneumoniae">Mycoplasma hyopneumoniae (3 genomes, 417 marker genes, 47 marker sets)</option> <option value="Mycoplasma hyorhinis">Mycoplasma hyorhinis (5 genomes, 427 marker genes, 49 marker sets)</option> <option value="Mycoplasma leachii">Mycoplasma leachii (2 genomes, 551 marker genes, 49 marker sets)</option> <option value="Mycoplasma mycoides">Mycoplasma mycoides (4 genomes, 476 marker genes, 64 marker sets)</option> <option value="Mycoplasma pneumoniae">Mycoplasma pneumoniae (3 genomes, 448 marker genes, 33 marker sets)</option> <option value="Mycoplasma synoviae">Mycoplasma synoviae (2 genomes, 457 marker genes, 39 marker sets)</option> <option value="Myroides odoratimimus">Myroides odoratimimus (6 genomes, 1001 marker genes, 318 marker sets)</option> <option value="Natronobacterium gregoryi">Natronobacterium gregoryi (2 genomes, 1012 marker genes, 271 marker sets)</option> <option value="Natronorubrum tibetense">Natronorubrum tibetense (2 genomes, 1039 marker genes, 332 marker sets)</option> <option value="Neisseria flavescens">Neisseria flavescens (2 genomes, 1305 marker genes, 164 marker sets)</option> <option value="Neisseria gonorrhoeae">Neisseria gonorrhoeae (14 genomes, 1201 marker genes, 205 marker sets)</option> <option value="Neisseria meningitidis">Neisseria meningitidis (20 genomes, 997 marker genes, 216 marker sets)</option> <option value="Novosphingobium nitrogenifigens">Novosphingobium nitrogenifigens (2 genomes, 1642 marker genes, 232 marker sets)</option> <option value="Oceanicaulis alexandrii">Oceanicaulis alexandrii (2 genomes, 1398 marker genes, 175 marker sets)</option> <option value="Ochrobactrum intermedium">Ochrobactrum intermedium (2 genomes, 1521 marker genes, 251 marker sets)</option> <option value="Oenococcus oeni">Oenococcus oeni (12 genomes, 770 marker genes, 112 marker sets)</option> <option value="Oligotropha carboxidovorans">Oligotropha carboxidovorans (2 genomes, 1592 marker genes, 192 marker sets)</option> <option value="Orientia tsutsugamushi">Orientia tsutsugamushi (2 genomes, 651 marker genes, 94 marker sets)</option> <option value="Ornithobacterium rhinotracheale">Ornithobacterium rhinotracheale (2 genomes, 1172 marker genes, 138 marker sets)</option> <option value="Oxalobacter formigenes">Oxalobacter formigenes (2 genomes, 1179 marker genes, 133 marker sets)</option> <option value="Paenibacillus alvei">Paenibacillus alvei (3 genomes, 1429 marker genes, 356 marker sets)</option> <option value="Paenibacillus mucilaginosus">Paenibacillus mucilaginosus (2 genomes, 1584 marker genes, 433 marker sets)</option> <option value="Pantoea ananatis">Pantoea ananatis (4 genomes, 1893 marker genes, 263 marker sets)</option> <option value="Parabacteroides merdae">Parabacteroides merdae (3 genomes, 1201 marker genes, 260 marker sets)</option> <option value="Parachlamydia acanthamoebae">Parachlamydia acanthamoebae (2 genomes, 1064 marker genes, 203 marker sets)</option> <option value="Parascardovia denticolens">Parascardovia denticolens (2 genomes, 908 marker genes, 87 marker sets)</option> <option value="Pasteurella multocida">Pasteurella multocida (5 genomes, 1400 marker genes, 149 marker sets)</option> <option value="Pectobacterium carotovorum">Pectobacterium carotovorum (2 genomes, 1949 marker genes, 285 marker sets)</option> <option value="Pediococcus acidilactici">Pediococcus acidilactici (4 genomes, 836 marker genes, 109 marker sets)</option> <option value="Pediococcus pentosaceus">Pediococcus pentosaceus (2 genomes, 936 marker genes, 98 marker sets)</option> <option value="Pelosinus fermentans">Pelosinus fermentans (2 genomes, 1545 marker genes, 299 marker sets)</option> <option value="Peptoniphilus lacrimalis">Peptoniphilus lacrimalis (2 genomes, 937 marker genes, 98 marker sets)</option> <option value="Peptostreptococcus anaerobius">Peptostreptococcus anaerobius (2 genomes, 1024 marker genes, 136 marker sets)</option> <option value="Persephonella lauensis">Persephonella lauensis (2 genomes, 1194 marker genes, 108 marker sets)</option> <option value="Phaeobacter gallaeciensis">Phaeobacter gallaeciensis (4 genomes, 1371 marker genes, 329 marker sets)</option> <option value="Photobacterium profundum">Photobacterium profundum (2 genomes, 1714 marker genes, 406 marker sets)</option> <option value="Polynucleobacter necessarius">Polynucleobacter necessarius (3 genomes, 968 marker genes, 106 marker sets)</option> <option value="Porphyromonas asaccharolytica">Porphyromonas asaccharolytica (2 genomes, 1014 marker genes, 131 marker sets)</option> <option value="Porphyromonas gingivalis">Porphyromonas gingivalis (8 genomes, 974 marker genes, 194 marker sets)</option> <option value="Prevotella amnii">Prevotella amnii (2 genomes, 985 marker genes, 155 marker sets)</option> <option value="Prevotella bivia">Prevotella bivia (2 genomes, 1077 marker genes, 150 marker sets)</option> <option value="Prevotella brevis">Prevotella brevis (2 genomes, 1125 marker genes, 185 marker sets)</option> <option value="Prevotella buccae">Prevotella buccae (2 genomes, 1106 marker genes, 220 marker sets)</option> <option value="Prevotella dentalis">Prevotella dentalis (2 genomes, 1171 marker genes, 188 marker sets)</option> <option value="Prevotella denticola">Prevotella denticola (3 genomes, 1015 marker genes, 186 marker sets)</option> <option value="Prevotella intermedia">Prevotella intermedia (2 genomes, 1108 marker genes, 149 marker sets)</option> <option value="Prevotella maculosa">Prevotella maculosa (2 genomes, 1057 marker genes, 211 marker sets)</option> <option value="Prevotella melaninogenica">Prevotella melaninogenica (2 genomes, 1039 marker genes, 225 marker sets)</option> <option value="Prevotella micans">Prevotella micans (2 genomes, 1048 marker genes, 165 marker sets)</option> <option value="Prevotella oralis">Prevotella oralis (2 genomes, 1159 marker genes, 165 marker sets)</option> <option value="Prevotella oris">Prevotella oris (3 genomes, 1006 marker genes, 202 marker sets)</option> <option value="Prevotella ruminicola">Prevotella ruminicola (2 genomes, 1088 marker genes, 224 marker sets)</option> <option value="Prevotella timonensis">Prevotella timonensis (2 genomes, 983 marker genes, 206 marker sets)</option> <option value="Prevotella veroralis">Prevotella veroralis (2 genomes, 986 marker genes, 200 marker sets)</option> <option value="Prochlorococcus marinus">Prochlorococcus marinus (13 genomes, 862 marker genes, 183 marker sets)</option> <option value="Propionibacterium acidifaciens">Propionibacterium acidifaciens (2 genomes, 539 marker genes, 376 marker sets)</option> <option value="Propionibacterium acidipropionici">Propionibacterium acidipropionici (2 genomes, 1277 marker genes, 233 marker sets)</option> <option value="Propionibacterium acnes">Propionibacterium acnes (20 genomes, 1053 marker genes, 218 marker sets)</option> <option value="Propionibacterium avidum">Propionibacterium avidum (2 genomes, 1195 marker genes, 150 marker sets)</option> <option value="Propionimicrobium lymphophilum">Propionimicrobium lymphophilum (2 genomes, 1112 marker genes, 105 marker sets)</option> <option value="Proteus mirabilis">Proteus mirabilis (2 genomes, 1888 marker genes, 231 marker sets)</option> <option value="Providencia alcalifaciens">Providencia alcalifaciens (2 genomes, 1875 marker genes, 218 marker sets)</option> <option value="Providencia stuartii">Providencia stuartii (2 genomes, 1918 marker genes, 220 marker sets)</option> <option value="Pseudoalteromonas haloplanktis">Pseudoalteromonas haloplanktis (2 genomes, 1596 marker genes, 348 marker sets)</option> <option value="Pseudoalteromonas luteoviolacea">Pseudoalteromonas luteoviolacea (2 genomes, 1493 marker genes, 389 marker sets)</option> <option value="Pseudoalteromonas piscicida">Pseudoalteromonas piscicida (2 genomes, 1903 marker genes, 366 marker sets)</option> <option value="Pseudobutyrivibrio ruminis">Pseudobutyrivibrio ruminis (3 genomes, 937 marker genes, 238 marker sets)</option> <option value="Pseudomonas aeruginosa">Pseudomonas aeruginosa (19 genomes, 1617 marker genes, 469 marker sets)</option> <option value="Pseudomonas brassicacearum">Pseudomonas brassicacearum (2 genomes, 1982 marker genes, 393 marker sets)</option> <option value="Pseudomonas chlororaphis">Pseudomonas chlororaphis (2 genomes, 1904 marker genes, 402 marker sets)</option> <option value="Pseudomonas fluorescens">Pseudomonas fluorescens (9 genomes, 1154 marker genes, 347 marker sets)</option> <option value="Pseudomonas fulva">Pseudomonas fulva (2 genomes, 1488 marker genes, 484 marker sets)</option> <option value="Pseudomonas mendocina">Pseudomonas mendocina (3 genomes, 1635 marker genes, 338 marker sets)</option> <option value="Pseudomonas monteilii">Pseudomonas monteilii (3 genomes, 1761 marker genes, 372 marker sets)</option> <option value="Pseudomonas putida">Pseudomonas putida (13 genomes, 1246 marker genes, 410 marker sets)</option> <option value="Pseudomonas stutzeri">Pseudomonas stutzeri (13 genomes, 1189 marker genes, 403 marker sets)</option> <option value="Pseudomonas syringae">Pseudomonas syringae (20 genomes, 1439 marker genes, 395 marker sets)</option> <option value="Pseudomonas thermotolerans">Pseudomonas thermotolerans (2 genomes, 1731 marker genes, 219 marker sets)</option> <option value="Pseudomonas umsongensis">Pseudomonas umsongensis (2 genomes, 1945 marker genes, 378 marker sets)</option> <option value="Pseudomonas viridiflava">Pseudomonas viridiflava (3 genomes, 1876 marker genes, 420 marker sets)</option> <option value="Pseudoxanthomonas suwonensis">Pseudoxanthomonas suwonensis (3 genomes, 1424 marker genes, 280 marker sets)</option> <option value="Pyrococcus furiosus">Pyrococcus furiosus (2 genomes, 981 marker genes, 99 marker sets)</option> <option value="Ralstonia pickettii">Ralstonia pickettii (2 genomes, 1715 marker genes, 287 marker sets)</option> <option value="Ralstonia solanacearum">Ralstonia solanacearum (4 genomes, 1543 marker genes, 320 marker sets)</option> <option value="Rhizobium etli">Rhizobium etli (2 genomes, 1571 marker genes, 331 marker sets)</option> <option value="Rhizobium leguminosarum">Rhizobium leguminosarum (20 genomes, 1104 marker genes, 354 marker sets)</option> <option value="Rhodobacter sphaeroides">Rhodobacter sphaeroides (5 genomes, 1409 marker genes, 281 marker sets)</option> <option value="Rhodococcus equi">Rhodococcus equi (2 genomes, 1456 marker genes, 325 marker sets)</option> <option value="Rhodococcus erythropolis">Rhodococcus erythropolis (2 genomes, 1456 marker genes, 402 marker sets)</option> <option value="Rhodococcus pyridinivorans">Rhodococcus pyridinivorans (2 genomes, 1329 marker genes, 319 marker sets)</option> <option value="Rhodonellum psychrophilum">Rhodonellum psychrophilum (2 genomes, 1473 marker genes, 372 marker sets)</option> <option value="Rhodopseudomonas palustris">Rhodopseudomonas palustris (7 genomes, 1180 marker genes, 388 marker sets)</option> <option value="Rhodospirillum rubrum">Rhodospirillum rubrum (2 genomes, 1731 marker genes, 250 marker sets)</option> <option value="Rhodothermus marinus">Rhodothermus marinus (3 genomes, 1379 marker genes, 216 marker sets)</option> <option value="Rickettsia canadensis">Rickettsia canadensis (2 genomes, 783 marker genes, 35 marker sets)</option> <option value="Rickettsia massiliae">Rickettsia massiliae (2 genomes, 794 marker genes, 67 marker sets)</option> <option value="Rickettsia prowazekii">Rickettsia prowazekii (5 genomes, 753 marker genes, 44 marker sets)</option> <option value="Rickettsia rickettsii">Rickettsia rickettsii (14 genomes, 737 marker genes, 72 marker sets)</option> <option value="Rickettsia slovaca">Rickettsia slovaca (2 genomes, 807 marker genes, 50 marker sets)</option> <option value="Rickettsia typhi">Rickettsia typhi (3 genomes, 786 marker genes, 24 marker sets)</option> <option value="Riemerella anatipestifer">Riemerella anatipestifer (5 genomes, 999 marker genes, 139 marker sets)</option> <option value="Rothia dentocariosa">Rothia dentocariosa (2 genomes, 1057 marker genes, 145 marker sets)</option> <option value="Rothia mucilaginosa">Rothia mucilaginosa (3 genomes, 990 marker genes, 143 marker sets)</option> <option value="Rubrivivax benzoatilyticus">Rubrivivax benzoatilyticus (2 genomes, 1846 marker genes, 310 marker sets)</option> <option value="Ruminococcus albus">Ruminococcus albus (2 genomes, 1187 marker genes, 284 marker sets)</option> <option value="Ruminococcus flavefaciens">Ruminococcus flavefaciens (5 genomes, 783 marker genes, 287 marker sets)</option> <option value="Ruminococcus gnavus">Ruminococcus gnavus (2 genomes, 1114 marker genes, 199 marker sets)</option> <option value="Saccharomonospora azurea">Saccharomonospora azurea (2 genomes, 1323 marker genes, 314 marker sets)</option> <option value="Salinispora arenicola">Salinispora arenicola (20 genomes, 1171 marker genes, 326 marker sets)</option> <option value="Salinispora pacifica">Salinispora pacifica (20 genomes, 1005 marker genes, 278 marker sets)</option> <option value="Salinispora tropica">Salinispora tropica (5 genomes, 1307 marker genes, 311 marker sets)</option> <option value="Salmonella enterica">Salmonella enterica (20 genomes, 1643 marker genes, 283 marker sets)</option> <option value="Saprospira grandis">Saprospira grandis (2 genomes, 1147 marker genes, 326 marker sets)</option> <option value="Selenomonas artemidis">Selenomonas artemidis (2 genomes, 1227 marker genes, 134 marker sets)</option> <option value="Selenomonas bovis">Selenomonas bovis (2 genomes, 1210 marker genes, 191 marker sets)</option> <option value="Selenomonas ruminantium">Selenomonas ruminantium (4 genomes, 1010 marker genes, 375 marker sets)</option> <option value="Selenomonas sputigena">Selenomonas sputigena (2 genomes, 1404 marker genes, 138 marker sets)</option> <option value="Serratia marcescens">Serratia marcescens (2 genomes, 1727 marker genes, 324 marker sets)</option> <option value="Serratia plymuthica">Serratia plymuthica (5 genomes, 1990 marker genes, 304 marker sets)</option> <option value="Serratia proteamaculans">Serratia proteamaculans (2 genomes, 2115 marker genes, 304 marker sets)</option> <option value="Shewanella baltica">Shewanella baltica (8 genomes, 1677 marker genes, 338 marker sets)</option> <option value="Shigella boydii">Shigella boydii (6 genomes, 1605 marker genes, 348 marker sets)</option> <option value="Shigella dysenteriae">Shigella dysenteriae (4 genomes, 1643 marker genes, 335 marker sets)</option> <option value="Shigella flexneri">Shigella flexneri (18 genomes, 1512 marker genes, 333 marker sets)</option> <option value="Shigella sonnei">Shigella sonnei (5 genomes, 1936 marker genes, 302 marker sets)</option> <option value="Solobacterium moorei">Solobacterium moorei (2 genomes, 877 marker genes, 170 marker sets)</option> <option value="Sphingomonas melonis">Sphingomonas melonis (3 genomes, 1562 marker genes, 203 marker sets)</option> <option value="Sphingomonas phyllosphaerae">Sphingomonas phyllosphaerae (2 genomes, 1437 marker genes, 248 marker sets)</option> <option value="Spirochaeta thermophila">Spirochaeta thermophila (2 genomes, 1122 marker genes, 152 marker sets)</option> <option value="Staphylococcus aureus">Staphylococcus aureus (20 genomes, 1169 marker genes, 170 marker sets)</option> <option value="Staphylococcus epidermidis">Staphylococcus epidermidis (20 genomes, 933 marker genes, 208 marker sets)</option> <option value="Staphylococcus hominis">Staphylococcus hominis (2 genomes, 1209 marker genes, 107 marker sets)</option> <option value="Staphylococcus lugdunensis">Staphylococcus lugdunensis (3 genomes, 1270 marker genes, 131 marker sets)</option> <option value="Staphylococcus pseudintermedius">Staphylococcus pseudintermedius (2 genomes, 1324 marker genes, 134 marker sets)</option> <option value="Stenotrophomonas maltophilia">Stenotrophomonas maltophilia (8 genomes, 1441 marker genes, 396 marker sets)</option> <option value="Streptococcus agalactiae">Streptococcus agalactiae (20 genomes, 807 marker genes, 204 marker sets)</option> <option value="Streptococcus anginosus">Streptococcus anginosus (5 genomes, 990 marker genes, 160 marker sets)</option> <option value="Streptococcus australis">Streptococcus australis (2 genomes, 1197 marker genes, 124 marker sets)</option> <option value="Streptococcus bovis">Streptococcus bovis (5 genomes, 976 marker genes, 140 marker sets)</option> <option value="Streptococcus dysgalactiae">Streptococcus dysgalactiae (5 genomes, 982 marker genes, 204 marker sets)</option> <option value="Streptococcus equi">Streptococcus equi (4 genomes, 961 marker genes, 136 marker sets)</option> <option value="Streptococcus gallolyticus">Streptococcus gallolyticus (3 genomes, 1151 marker genes, 131 marker sets)</option> <option value="Streptococcus infantarius">Streptococcus infantarius (2 genomes, 1097 marker genes, 118 marker sets)</option> <option value="Streptococcus infantis">Streptococcus infantis (4 genomes, 971 marker genes, 131 marker sets)</option> <option value="Streptococcus intermedius">Streptococcus intermedius (3 genomes, 1049 marker genes, 115 marker sets)</option> <option value="Streptococcus mitis">Streptococcus mitis (11 genomes, 743 marker genes, 256 marker sets)</option> <option value="Streptococcus mutans">Streptococcus mutans (8 genomes, 1053 marker genes, 121 marker sets)</option> <option value="Streptococcus oralis">Streptococcus oralis (9 genomes, 871 marker genes, 196 marker sets)</option> <option value="Streptococcus parasanguinis">Streptococcus parasanguinis (6 genomes, 999 marker genes, 203 marker sets)</option> <option value="Streptococcus parauberis">Streptococcus parauberis (3 genomes, 969 marker genes, 126 marker sets)</option> <option value="Streptococcus pneumoniae">Streptococcus pneumoniae (20 genomes, 845 marker genes, 160 marker sets)</option> <option value="Streptococcus pseudopneumoniae">Streptococcus pseudopneumoniae (3 genomes, 1102 marker genes, 236 marker sets)</option> <option value="Streptococcus pseudoporcinus">Streptococcus pseudoporcinus (2 genomes, 1166 marker genes, 114 marker sets)</option> <option value="Streptococcus pyogenes">Streptococcus pyogenes (20 genomes, 885 marker genes, 150 marker sets)</option> <option value="Streptococcus salivarius">Streptococcus salivarius (4 genomes, 1021 marker genes, 130 marker sets)</option> <option value="Streptococcus sanguinis">Streptococcus sanguinis (13 genomes, 877 marker genes, 335 marker sets)</option> <option value="Streptococcus suis">Streptococcus suis (14 genomes, 852 marker genes, 161 marker sets)</option> <option value="Streptococcus thermophilus">Streptococcus thermophilus (6 genomes, 971 marker genes, 96 marker sets)</option> <option value="Streptococcus urinalis">Streptococcus urinalis (2 genomes, 1107 marker genes, 100 marker sets)</option> <option value="Streptomyces cattleya">Streptomyces cattleya (3 genomes, 1460 marker genes, 495 marker sets)</option> <option value="Sulfobacillus acidophilus">Sulfobacillus acidophilus (2 genomes, 1273 marker genes, 192 marker sets)</option> <option value="Sulfolobus acidocaldarius">Sulfolobus acidocaldarius (3 genomes, 819 marker genes, 115 marker sets)</option> <option value="Sulfolobus islandicus">Sulfolobus islandicus (9 genomes, 778 marker genes, 149 marker sets)</option> <option value="Sulfolobus solfataricus">Sulfolobus solfataricus (2 genomes, 822 marker genes, 116 marker sets)</option> <option value="Sutterella wadsworthensis">Sutterella wadsworthensis (3 genomes, 935 marker genes, 232 marker sets)</option> <option value="Synechococcus elongatus">Synechococcus elongatus (2 genomes, 1468 marker genes, 121 marker sets)</option> <option value="Taylorella asinigenitalis">Taylorella asinigenitalis (2 genomes, 1125 marker genes, 58 marker sets)</option> <option value="Taylorella equigenitalis">Taylorella equigenitalis (2 genomes, 1154 marker genes, 53 marker sets)</option> <option value="Teredinibacter turnerae">Teredinibacter turnerae (8 genomes, 1640 marker genes, 312 marker sets)</option> <option value="Thauera linaloolentis">Thauera linaloolentis (2 genomes, 1773 marker genes, 294 marker sets)</option> <option value="Thermacetogenium phaeum">Thermacetogenium phaeum (2 genomes, 1344 marker genes, 157 marker sets)</option> <option value="Thermoanaerobacterium thermosaccharolyticum">Thermoanaerobacterium thermosaccharolyticum (2 genomes, 1317 marker genes, 136 marker sets)</option> <option value="Thermobifida fusca">Thermobifida fusca (2 genomes, 1421 marker genes, 225 marker sets)</option> <option value="Thermus oshimai">Thermus oshimai (2 genomes, 1196 marker genes, 112 marker sets)</option> <option value="Thermus scotoductus">Thermus scotoductus (2 genomes, 1098 marker genes, 162 marker sets)</option> <option value="Thermus thermophilus">Thermus thermophilus (4 genomes, 1100 marker genes, 123 marker sets)</option> <option value="Thioalkalivibrio thiocyanoxidans">Thioalkalivibrio thiocyanoxidans (2 genomes, 1159 marker genes, 330 marker sets)</option> <option value="Thiobacillus denitrificans">Thiobacillus denitrificans (2 genomes, 1290 marker genes, 203 marker sets)</option> <option value="Treponema denticola">Treponema denticola (9 genomes, 954 marker genes, 221 marker sets)</option> <option value="Treponema pallidum">Treponema pallidum (3 genomes, 717 marker genes, 44 marker sets)</option> <option value="Treponema vincentii">Treponema vincentii (2 genomes, 946 marker genes, 178 marker sets)</option> <option value="Ureaplasma parvum">Ureaplasma parvum (5 genomes, 420 marker genes, 35 marker sets)</option> <option value="Ureaplasma urealyticum">Ureaplasma urealyticum (10 genomes, 386 marker genes, 50 marker sets)</option> <option value="Variovorax paradoxus">Variovorax paradoxus (5 genomes, 1314 marker genes, 368 marker sets)</option> <option value="Veillonella atypica">Veillonella atypica (3 genomes, 1145 marker genes, 136 marker sets)</option> <option value="Veillonella parvula">Veillonella parvula (2 genomes, 1174 marker genes, 97 marker sets)</option> <option value="Vibrio alginolyticus">Vibrio alginolyticus (5 genomes, 1283 marker genes, 392 marker sets)</option> <option value="Vibrio cholerae">Vibrio cholerae (20 genomes, 1729 marker genes, 348 marker sets)</option> <option value="Vibrio fischeri">Vibrio fischeri (2 genomes, 1814 marker genes, 227 marker sets)</option> <option value="Vibrio harveyi">Vibrio harveyi (3 genomes, 1674 marker genes, 373 marker sets)</option> <option value="Vibrio mimicus">Vibrio mimicus (2 genomes, 1752 marker genes, 276 marker sets)</option> <option value="Vibrio parahaemolyticus">Vibrio parahaemolyticus (12 genomes, 1733 marker genes, 363 marker sets)</option> <option value="Vibrio splendidus">Vibrio splendidus (2 genomes, 1757 marker genes, 310 marker sets)</option> <option value="Vibrio vulnificus">Vibrio vulnificus (5 genomes, 1802 marker genes, 386 marker sets)</option> <option value="Wigglesworthia glossinidia">Wigglesworthia glossinidia (2 genomes, 679 marker genes, 9 marker sets)</option> <option value="Wohlfahrtiimonas chitiniclastica">Wohlfahrtiimonas chitiniclastica (2 genomes, 1335 marker genes, 78 marker sets)</option> <option value="Wolbachia endosymbiont of Culex quinquefasciatus">Wolbachia endosymbiont of Culex quinquefasciatus (2 genomes, 747 marker genes, 56 marker sets)</option> <option value="Xanthomonas axonopodis">Xanthomonas axonopodis (5 genomes, 1627 marker genes, 365 marker sets)</option> <option value="Xanthomonas campestris">Xanthomonas campestris (5 genomes, 1623 marker genes, 336 marker sets)</option> <option value="Xanthomonas oryzae">Xanthomonas oryzae (3 genomes, 1627 marker genes, 339 marker sets)</option> <option value="Xylella fastidiosa">Xylella fastidiosa (10 genomes, 1207 marker genes, 178 marker sets)</option> <option value="Yersinia enterocolitica">Yersinia enterocolitica (5 genomes, 1868 marker genes, 316 marker sets)</option> <option value="Yersinia pestis">Yersinia pestis (20 genomes, 1683 marker genes, 330 marker sets)</option> <option value="Yersinia pseudotuberculosis">Yersinia pseudotuberculosis (4 genomes, 1975 marker genes, 263 marker sets)</option> <option value="Zymomonas mobilis">Zymomonas mobilis (3 genomes, 1142 marker genes, 133 marker sets)</option> </param> </when> </conditional> </xml> <xml name="version"> <version_command>checkm</version_command> </xml> <token name="@HELP_HEADER@"><![CDATA[ What it does ============ CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree. ]]></token> <token name="@HELP_BINS@"><![CDATA[ - Bins ]]></token> <token name="@HELP_TREE_DEFAULT_OUTPUTS@"><![CDATA[ - Phylogenetic HMM model info for each bin - Phylogenetic bin stats - Phylogenetic HMM hits to each bin - Concatenated masked sequences - Concatenated tree ]]></token> <token name="@HELP_TREE_EXTRA_OUTPUTS@"><![CDATA[ <collection name="hmmer_tree_ali" type="list" label="${tool.name} on ${on_string}: Phylogenetic HMMER alignment file for each bin"> <filter>ali and 'hmmer_tree_ali' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/hmmer\.tree\.ali\.txt" format="txt" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <data name="concatenated_pplacer_json" format="json" from_work_dir="output/storage/tree/concatenated.pplacer.json" label="${tool.name} on ${on_string}: Concatenated pplacer JSON"> <filter>'concatenate_pplacer_json' in extra_outputs</filter> </data> <collection name="genes_fna" type="list" label="${tool.name} on ${on_string}: Protein gene sequences for each bin"> <filter>not genes and nt and 'genes_fna' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.fna" format="fasta" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <collection name="genes_faa" type="list" label="${tool.name} on ${on_string}: Nucleotide gene sequences for each bin"> <filter>'genes_faa' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.faa" format="fasta" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <collection name="genes_gff" type="list" label="${tool.name} on ${on_string}: Gene feature files for each bin"> <filter>not genes and 'genes_gff' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.gff" format="gff" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> ]]></token> <xml name="citations"> <citations> <citation type="doi">10.1101/gr.186072.114</citation> </citations> </xml> </macros>