Mercurial > repos > iuc > checkm_tree
changeset 1:6d1c282e2ce2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit a96defec82bfa9628fa821ffa6df5c68314a41d8
author | iuc |
---|---|
date | Mon, 08 Aug 2022 19:59:26 +0000 |
parents | 9b2790bca5b5 |
children | ce3fd529a6ec |
files | macros.xml tree.xml |
diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/macros.xml Fri Jul 29 20:29:27 2022 +0000 +++ b/macros.xml Mon Aug 08 19:59:26 2022 +0000 @@ -119,7 +119,7 @@ <filter>'alignment_file' in extra_outputs</filter> </data>--> <data name="marker_gene_stats" format="tabular" from_work_dir="output/storage/marker_gene_stats.tsv" label="${tool.name} on ${on_string}: Marker gene statistics"> - <filter>'marker_gene_stats' in extra_outputs</filter> + <filter>extra_outputs and 'marker_gene_stats' in extra_outputs</filter> </data> </xml> <xml name="rank_taxon">
--- a/tree.xml Fri Jul 29 20:29:27 2022 +0000 +++ b/tree.xml Mon Aug 08 19:59:26 2022 +0000 @@ -38,22 +38,22 @@ <data name="concatenated_fasta" format="fasta" from_work_dir="output/storage/tree/concatenated.fasta" label="${tool.name} on ${on_string}: Concatenated masked sequences"/> <data name="concatenated_tre" format="phyloxml" from_work_dir="output/storage/tree/concatenated.tre" label="${tool.name} on ${on_string}: Concatenated tree"/> <collection name="hmmer_tree_ali" type="list" label="${tool.name} on ${on_string}: Phylogenetic HMMER alignment file for each bin"> - <filter>ali and 'hmmer_tree_ali' in extra_outputs</filter> + <filter>ali and extra_outputs and 'hmmer_tree_ali' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/hmmer\.tree\.ali\.txt" format="txt" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <data name="concatenated_pplacer_json" format="json" from_work_dir="output/storage/tree/concatenated.pplacer.json" label="${tool.name} on ${on_string}: Concatenated pplacer JSON"> - <filter>'concatenate_pplacer_json' in extra_outputs</filter> + <filter>extra_outputs and 'concatenate_pplacer_json' in extra_outputs</filter> </data> <collection name="genes_fna" type="list" label="${tool.name} on ${on_string}: Protein gene sequences for each bin"> - <filter>not genes and nt and 'genes_fna' in extra_outputs</filter> + <filter>not genes and nt and extra_outputs and 'genes_fna' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.fna" format="fasta" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <collection name="genes_faa" type="list" label="${tool.name} on ${on_string}: Nucleotide gene sequences for each bin"> - <filter>'genes_faa' in extra_outputs</filter> + <filter>extra_outputs and 'genes_faa' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.faa" format="fasta" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> <collection name="genes_gff" type="list" label="${tool.name} on ${on_string}: Gene feature files for each bin"> - <filter>not genes and 'genes_gff' in extra_outputs</filter> + <filter>not genes and extra_outputs and 'genes_gff' in extra_outputs</filter> <discover_datasets pattern="(?P<designation>.*)/genes\.gff" format="gff" directory="output/bins/" recurse="true" match_relative_path="true"/> </collection> </outputs>