annotate test-data/train_2_pos.tabular @ 3:a30b9df1775a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit 8778c3f71e295ec5b62ef3998319d211fc864e35

386	chr1	0	22	+	chr2	1	24	-	GUUGCGGCUGGACGAGGCGCAG	CCCAGCGGGGCUGGGCGCGCGGA	.((((((((.(.(....(((..&....)))..).).))).))))).	-14.5	UUGCGGCUGGACGAGGCGC	GCGGGGCUGGGCGCGCGG	2&5	chr1	1	19	+	chr2	5	19	-	527.40	2400.00	2927.4	1.0	1.0	1.0	CDS	miRNA	ENST00000624358;ENST00000651965	ENST00000584178
156	chr1	22	45	-	chr2	24	73	+	CUGGUGAAGAGACAUGAGAGGAU	GGUGAGGCGGGGGGGCGAGCCCUGAGGGGCUCUCGCUUCUGGCGCCAAG	.(((((.((((...((((((...&.............................)))))).))))..)))))..	-17	UGGUGAAGAGACAUGAGAG	CUCUCGCUUCUGGCGCCA	2&30	chr1	23	41	-	chr2	53	42	+	2419.00	1304.00	3723.0	1.0	1.0	1.0	lncRNA	miRNA	ENST00000667915	ENST00000611066
102	chr1	45	95	+	chr2	73	130	+	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG	AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG	((((((((((((.(((((.((.((((((((((.(((((((((((((((..&.....))))))).))).)))))..)))))))))))).)))).).)))))))))))).	-90.1	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG	CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC	1&6	chr1	45	93	+	chr2	78	124	+	54.44	50.81	105.25	1.0	1.0	1.0	miRNA	miRNA	ENST00000615959	ENST00000581792
102	chr1	95	152	+	chr2	130	180	+	AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG	.....(((((((.(((.(((((..((((((((((((.((((.(.((((((((((((.&)))))))))))).))))).)).)))))))))).)))))))))))))))..	-90.1	CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG	6&1	chr1	100	146	+	chr2	130	178	+	50.81	54.44	105.25	1.0	1.0	1.0	miRNA	miRNA	ENST00000615959	ENST00000615959
102	chr1	152	202	+	chr2	180	237	+	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG	AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG	((((((((((((.(((((.((.((((((((((.(((((((((((((((..&.....))))))).))).)))))..)))))))))))).)))).).)))))))))))).	-90.1	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG	CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC	1&6	chr1	152	200	+	chr2	185	231	+	54.44	50.81	105.25	1.0	1.0	1.0	miRNA	miRNA	ENST00000581792	ENST00000615959
102	chr1	202	259	+	chr2	237	287	+	AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG	.....(((((((.(((.(((((..((((((((((((.((((.(.((((((((((((.&)))))))))))).))))).)).)))))))))).)))))))))))))))..	-90.1	CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC	GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG	6&1	chr1	207	253	+	chr2	237	285	+	50.81	54.44	105.25	1.0	1.0	1.0	miRNA	miRNA	ENST00000581792	ENST00000581792
86	chr1	259	280	-	chr2	287	310	-	GCUGCGGCUGGAUGAGGCGGG	CCCAGCGGGGCUGGGCGCGCGGA	.((((((((.(.....(((((&))).)).....).))).))))).	-18.6	CUGCGGCUGGAUGAGGCGGG	CCCAGCGGGGCUGGGCGCGCGG	2&1	chr1	260	279	-	chr2	287	309	-	124.00	2400.00	2524.0	1.0	1.0	1.0	CDS	miRNA	ENST00000338754;ENST00000398110;ENST00000403880;ENST00000442495	ENST00000584178
65	chr1	280	298	-	chr2	310	333	-	GCCGCGGCGCGAGCCGGG	CCCAGCGGGGCUGGGCGCGCGGA	.(((((((.(.(((((((&))).....)))).))).))))).	-23.9	CCGCGGCGCGAGCCGGG	CCCAGCGGGGCUGGGCGCGCGG	2&1	chr1	281	297	-	chr2	310	332	-	89.73	2400.00	2489.73	1.0	1.0	1.0	protein_coding	miRNA	ENST00000257765;ENST00000423730;ENST00000433730;ENST00000610435	ENST00000584178
45	chr1	298	316	+	chr2	333	356	-	CUGGGGGCCCUUCCCGUG	CCCAGCGGGGCUGGGCGCGCGGA	(((.(.((((.((((((.&....))))))..)))).).))).	-25.7	CUGGGGGCCCUUCCCGU	GCGGGGCUGGGCGCGCGG	1&5	chr1	298	315	+	chr2	337	351	-	67.94	2400.00	2467.94	1.0	0.83	0.83	lncRNA	miRNA	ENST00000609544	ENST00000584178
42	chr1	316	337	-	chr2	356	377	+	GUUCCCUCCUCCUCCUCCCCU	GUAGGGGGCGGGCUCCGGCGC	((((((.((((((.(......&).)))))).)))....)))..	-15.4	GUUCCCUCCUCCUCC	GUAGGGGGCGGGCUCCGGC	1&1	chr1	316	331	-	chr2	356	375	+	53.16	5016.00	5069.16	1.0	1.0	1.0	lncRNA	miRNA	ENST00000607278	ENST00000577388
40	chr1	337	359	+	chr2	377	400	-	GGCGCGCGCCGGGCCCGUGCCG	CCCAGCGGGGCUGGGCGCGCGGA	..((((((((.(((((.(((..&....)))))))).))))))))..	-35.6	CGCGCGCCGGGCCCGUGC	GCGGGGCUGGGCGCGCG	3&5	chr1	339	355	+	chr2	381	394	-	54.01	2400.00	2454.01	1.0	0.83	0.83	CDS	miRNA	ENST00000369800;ENST00000522853	ENST00000584178
35	chr1	359	377	+	chr2	400	455	+	CCCCGGGCCGGGCACCGC	CGCGCGUGCGCCCGAGCGCGGCCCGGUGGUCCCUCCCGGACAGGCGUUCGUGCGA	(((((((((((((.((((&...))).).))))......))))))).))..........................	-29.9	CCCCGGGCCGGGCACCGC	GCGUGCGCCCGAGCGCGGCCCGGUGG	1&4	chr1	359	377	+	chr2	403	426	+	80.76	74.37	155.13	1.0	1.0	1.0	protein_coding	miRNA	ENST00000343605	ENST00000614492
35	chr1	377	395	+	chr2	455	510	+	CCCCGGGCCGGGCACCGC	CGCGCGUGCGCCCGAGCGCGGCCCGGUGGUCCCUCCCGGACAGGCGUUCGUGCGA	(((((((((((((.((((&...))).).))))......))))))).))..........................	-29.9	CCCCGGGCCGGGCACCGC	GCGUGCGCCCGAGCGCGGCCCGGUGG	1&4	chr1	377	395	+	chr2	458	481	+	80.76	74.37	155.13	1.0	1.0	1.0	protein_coding	miRNA	ENST00000343605	ENST00000577708
34	chr1	395	413	-	chr2	510	533	-	GCCGCGGCGAGCCGGGCC	CCCAGCGGGGCUGGGCGCGCGGA	.(((((.(..(((.((((&........)))).))))))))).	-22.4	CCGCGGCGAGCCGGGCC	GGCUGGGCGCGCGG	2&9	chr1	396	412	-	chr2	518	524	-	47.43	2400.00	2447.43	1.0	1.0	1.0	protein_coding	miRNA	ENST00000371984	ENST00000584178
23	chr1	413	431	+	chr2	533	556	-	GGACGGGCCCUUCCCGUG	CCCAGCGGGGCUGGGCGCGCGGA	.(.((.((((.((((((.&....))))))..)))).)))...	-22.5	GACGGGCCCUUCCCGU	GCGGGGCUGGGCGCGC	2&5	chr1	414	429	+	chr2	537	549	-	35.89	2400.00	2435.89	1.0	0.83	0.83	CDS	miRNA	ENST00000305943	ENST00000584178
22	chr1	431	471	-	chr2	556	577	+	UGCCUUCCCCGUCCGUCCGUCCGUCCGUCCAUCCGUCCAC	GUAGGGGGCGGGCUCCGGCGC	.........((.(((...((((((((..((..........&...))))))))))..))))).	-20.7	CGUCCGUCCGUCCGUCCGUCC	GGGGGCGGGCUCCGGCG	10&4	chr1	440	452	-	chr2	559	573	+	14510.00	5016.00	19526.0	1.0	1.0	1.0	protein_coding	miRNA	ENST00000356861;ENST00000425528;ENST00000450764;ENST00000589149	ENST00000577388
20	chr1	471	510	+	chr2	577	612	+	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU	UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	(((((..((((((((((.((.((((((.(((........&.))).)))))).)))))))).)))).....)))))	-49.4	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC	GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	1&2	chr1	471	502	+	chr2	578	611	+	42.67	25.71	68.38	1.0	1.0	1.0	miRNA	miRNA	ENST00000615959	ENST00000581792
20	chr1	510	545	+	chr2	612	651	+	UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU	.(((.((((((.(((((((.(((((.....(((((&)))))..)))))))))).)).)))))).)))........	-49.4	GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC	2&1	chr1	511	544	+	chr2	612	643	+	25.71	42.67	68.38	1.0	1.0	1.0	miRNA	miRNA	ENST00000615959	ENST00000615959
20	chr1	545	698	+	chr2	651	674	-	GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG	CCCAGCGGGGCUGGGCGCGCGGA	.......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).)))..	-26.5	CGCACUUGCGGCCCCGGGUUCCUCCCGGG	CCCAGCGGGGCUGGGCGCGCG	104&1	chr1	648	574	+	chr2	651	672	-	10610.00	2400.00	13010.0	1.0	0.83	0.83	rRNA	miRNA	ENST00000612463	ENST00000584178
20	chr1	698	851	+	chr2	674	697	-	GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG	CCCAGCGGGGCUGGGCGCGCGGA	.......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).)))..	-26.5	CGCACUUGCGGCCCCGGGUUCCUCCCGGG	CCCAGCGGGGCUGGGCGCGCG	104&1	chr1	801	727	+	chr2	674	695	-	10610.00	2400.00	13010.0	1.0	0.83	0.83	rRNA	miRNA	ENST00000610460	ENST00000584178
20	chr1	851	1004	+	chr2	697	720	-	GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG	CCCAGCGGGGCUGGGCGCGCGGA	.......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).)))..	-26.5	CGCACUUGCGGCCCCGGGUUCCUCCCGGG	CCCAGCGGGGCUGGGCGCGCG	104&1	chr1	954	880	+	chr2	697	718	-	10610.00	2400.00	13010.0	1.0	0.83	0.83	rRNA	miRNA	ENST00000613359	ENST00000584178
20	chr1	1004	1157	+	chr2	720	743	-	GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG	CCCAGCGGGGCUGGGCGCGCGGA	.......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).)))..	-26.5	CGCACUUGCGGCCCCGGGUUCCUCCCGGG	CCCAGCGGGGCUGGGCGCGCG	104&1	chr1	1107	1033	+	chr2	720	741	-	10610.00	2400.00	13010.0	1.0	0.83	0.83	rRNA	miRNA	ENST00000619471	ENST00000584178
20	chr1	1157	1196	+	chr2	743	778	+	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU	UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	(((((..((((((((((.((.((((((.(((........&.))).)))))).)))))))).)))).....)))))	-49.4	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC	GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	1&2	chr1	1157	1188	+	chr2	744	777	+	42.67	25.71	68.38	1.0	1.0	1.0	miRNA	miRNA	ENST00000581792	ENST00000615959
20	chr1	1196	1231	+	chr2	778	817	+	UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU	.(((.((((((.(((((((.(((((.....(((((&)))))..)))))))))).)).)))))).)))........	-49.4	GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG	CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC	2&1	chr1	1197	1230	+	chr2	778	809	+	25.71	42.67	68.38	1.0	1.0	1.0	miRNA	miRNA	ENST00000581792	ENST00000581792
20	chr1	1231	1384	+	chr2	817	840	-	NA	NA	NA	NA	NA	NA	NA	chr1	1231	1384	+	chr2	817	840	-	10610.00	2400.00	13010.0	1.0	0.83	0.83	rRNA	miRNA	ENST00000611446	ENST00000584178