Mercurial > repos > iuc > cherri_train
comparison macros.xml @ 0:f28df61581f4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit f9348123725f421ddbdbd8d372d038da4880dbac
author | iuc |
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date | Fri, 09 Dec 2022 17:40:40 +0000 |
parents | |
children | a30b9df1775a |
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-1:000000000000 | 0:f28df61581f4 |
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1 <macros> | |
2 <token name="@VERSION@">0.7</token> | |
3 <token name="@PROFILE@">21.05</token> | |
4 <xml name="requirements"> | |
5 <requirements> | |
6 <requirement type="package" version="@VERSION@">cherri</requirement> | |
7 </requirements> | |
8 </xml> | |
9 <macro name="reference_source_conditional"> | |
10 <conditional name="ref_source"> | |
11 <param name="ref_source_selector" type="select" label="Reference genome in FASTA format"> | |
12 <option value="cached">locally cached</option> | |
13 <option value="history">in your history</option> | |
14 </param> | |
15 <when value="cached"> | |
16 <param name="genome_fasta" type="select" label="Select reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> | |
17 <options from_data_table="all_fasta"> | |
18 <filter type="sort_by" column="2" /> | |
19 <validator type="no_options" message="No indices are available." /> | |
20 </options> | |
21 </param> | |
22 </when> | |
23 <when value="history"> | |
24 <param name="genome_fasta" type="data" format="fasta" label="Select a reference dataset in FASTA format" /> | |
25 </when> | |
26 </conditional> | |
27 <param name="chrom_len_file" type="data" format="tabular" label="Two column tabular file containing chromosome lengths" help="Format: 'chrom name' \t 'chrom length'" /> | |
28 </macro> | |
29 <token name="@COMMONPARAMS@" ><![CDATA[ | |
30 #if $intarna_param_file: | |
31 -p '$intarna_param_file' | |
32 #end if | |
33 -c '$context' | |
34 -st $use_structure | |
35 -t '$run_time' | |
36 -me "\${GALAXY_MEMORY_MB_PER_SLOT:-8000}" | |
37 -j "\${GALAXY_SLOTS:-1}" | |
38 ]]></token> | |
39 <xml name="edam_ontology"> | |
40 <edam_topics> | |
41 <edam_topic>topic_0080</edam_topic> | |
42 <edam_topic>topic_0081</edam_topic> | |
43 <edam_topic>topic_0160</edam_topic> | |
44 </edam_topics> | |
45 <edam_operations> | |
46 <edam_operation>operation_2995</edam_operation> | |
47 </edam_operations> | |
48 </xml> | |
49 <xml name="bio_tools"> | |
50 <xrefs> | |
51 <xref type="bio.tools">cherri</xref> | |
52 </xrefs> | |
53 </xml> | |
54 <xml name="requirements"> | |
55 <requirements> | |
56 <requirement type="package" version="@VERSION@">cherri</requirement> | |
57 <yield/> | |
58 </requirements> | |
59 </xml> | |
60 <xml name="citations"> | |
61 <citations> | |
62 <yield /> | |
63 </citations> | |
64 </xml> | |
65 </macros> |