Mercurial > repos > iuc > cherri_train
diff test-data/train_2_pos.tabular @ 0:f28df61581f4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit f9348123725f421ddbdbd8d372d038da4880dbac
| author | iuc |
|---|---|
| date | Fri, 09 Dec 2022 17:40:40 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/train_2_pos.tabular Fri Dec 09 17:40:40 2022 +0000 @@ -0,0 +1,25 @@ +386 chr1 0 22 + chr2 1 24 - GUUGCGGCUGGACGAGGCGCAG CCCAGCGGGGCUGGGCGCGCGGA .((((((((.(.(....(((..&....)))..).).))).))))). -14.5 UUGCGGCUGGACGAGGCGC GCGGGGCUGGGCGCGCGG 2&5 chr1 1 19 + chr2 5 19 - 527.40 2400.00 2927.4 1.0 1.0 1.0 CDS miRNA ENST00000624358;ENST00000651965 ENST00000584178 +156 chr1 22 45 - chr2 24 73 + CUGGUGAAGAGACAUGAGAGGAU GGUGAGGCGGGGGGGCGAGCCCUGAGGGGCUCUCGCUUCUGGCGCCAAG .(((((.((((...((((((...&.............................)))))).))))..))))).. -17 UGGUGAAGAGACAUGAGAG CUCUCGCUUCUGGCGCCA 2&30 chr1 23 41 - chr2 53 42 + 2419.00 1304.00 3723.0 1.0 1.0 1.0 lncRNA miRNA ENST00000667915 ENST00000611066 +102 chr1 45 95 + chr2 73 130 + GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG ((((((((((((.(((((.((.((((((((((.(((((((((((((((..&.....))))))).))).)))))..)))))))))))).)))).).)))))))))))). -90.1 GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC 1&6 chr1 45 93 + chr2 78 124 + 54.44 50.81 105.25 1.0 1.0 1.0 miRNA miRNA ENST00000615959 ENST00000581792 +102 chr1 95 152 + chr2 130 180 + AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG .....(((((((.(((.(((((..((((((((((((.((((.(.((((((((((((.&)))))))))))).))))).)).)))))))))).))))))))))))))).. -90.1 CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG 6&1 chr1 100 146 + chr2 130 178 + 50.81 54.44 105.25 1.0 1.0 1.0 miRNA miRNA ENST00000615959 ENST00000615959 +102 chr1 152 202 + chr2 180 237 + GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG ((((((((((((.(((((.((.((((((((((.(((((((((((((((..&.....))))))).))).)))))..)))))))))))).)))).).)))))))))))). -90.1 GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC 1&6 chr1 152 200 + chr2 185 231 + 54.44 50.81 105.25 1.0 1.0 1.0 miRNA miRNA ENST00000581792 ENST00000615959 +102 chr1 202 259 + chr2 237 287 + AGGCCCCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGCG GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGGUG .....(((((((.(((.(((((..((((((((((((.((((.(.((((((((((((.&)))))))))))).))))).)).)))))))))).))))))))))))))).. -90.1 CCGCGCGUGUGUCCCGGCUGCGGUCGGCCGCGCUCGAGGGGUCCCCGUGGC GCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGGUGCCGCGCGG 6&1 chr1 207 253 + chr2 237 285 + 50.81 54.44 105.25 1.0 1.0 1.0 miRNA miRNA ENST00000581792 ENST00000581792 +86 chr1 259 280 - chr2 287 310 - GCUGCGGCUGGAUGAGGCGGG CCCAGCGGGGCUGGGCGCGCGGA .((((((((.(.....(((((&))).)).....).))).))))). -18.6 CUGCGGCUGGAUGAGGCGGG CCCAGCGGGGCUGGGCGCGCGG 2&1 chr1 260 279 - chr2 287 309 - 124.00 2400.00 2524.0 1.0 1.0 1.0 CDS miRNA ENST00000338754;ENST00000398110;ENST00000403880;ENST00000442495 ENST00000584178 +65 chr1 280 298 - chr2 310 333 - GCCGCGGCGCGAGCCGGG CCCAGCGGGGCUGGGCGCGCGGA .(((((((.(.(((((((&))).....)))).))).))))). -23.9 CCGCGGCGCGAGCCGGG CCCAGCGGGGCUGGGCGCGCGG 2&1 chr1 281 297 - chr2 310 332 - 89.73 2400.00 2489.73 1.0 1.0 1.0 protein_coding miRNA ENST00000257765;ENST00000423730;ENST00000433730;ENST00000610435 ENST00000584178 +45 chr1 298 316 + chr2 333 356 - CUGGGGGCCCUUCCCGUG CCCAGCGGGGCUGGGCGCGCGGA (((.(.((((.((((((.&....))))))..)))).).))). -25.7 CUGGGGGCCCUUCCCGU GCGGGGCUGGGCGCGCGG 1&5 chr1 298 315 + chr2 337 351 - 67.94 2400.00 2467.94 1.0 0.83 0.83 lncRNA miRNA ENST00000609544 ENST00000584178 +42 chr1 316 337 - chr2 356 377 + GUUCCCUCCUCCUCCUCCCCU GUAGGGGGCGGGCUCCGGCGC ((((((.((((((.(......&).)))))).)))....))).. -15.4 GUUCCCUCCUCCUCC GUAGGGGGCGGGCUCCGGC 1&1 chr1 316 331 - chr2 356 375 + 53.16 5016.00 5069.16 1.0 1.0 1.0 lncRNA miRNA ENST00000607278 ENST00000577388 +40 chr1 337 359 + chr2 377 400 - GGCGCGCGCCGGGCCCGUGCCG CCCAGCGGGGCUGGGCGCGCGGA ..((((((((.(((((.(((..&....)))))))).)))))))).. -35.6 CGCGCGCCGGGCCCGUGC GCGGGGCUGGGCGCGCG 3&5 chr1 339 355 + chr2 381 394 - 54.01 2400.00 2454.01 1.0 0.83 0.83 CDS miRNA ENST00000369800;ENST00000522853 ENST00000584178 +35 chr1 359 377 + chr2 400 455 + CCCCGGGCCGGGCACCGC CGCGCGUGCGCCCGAGCGCGGCCCGGUGGUCCCUCCCGGACAGGCGUUCGUGCGA (((((((((((((.((((&...))).).))))......))))))).)).......................... -29.9 CCCCGGGCCGGGCACCGC GCGUGCGCCCGAGCGCGGCCCGGUGG 1&4 chr1 359 377 + chr2 403 426 + 80.76 74.37 155.13 1.0 1.0 1.0 protein_coding miRNA ENST00000343605 ENST00000614492 +35 chr1 377 395 + chr2 455 510 + CCCCGGGCCGGGCACCGC CGCGCGUGCGCCCGAGCGCGGCCCGGUGGUCCCUCCCGGACAGGCGUUCGUGCGA (((((((((((((.((((&...))).).))))......))))))).)).......................... -29.9 CCCCGGGCCGGGCACCGC GCGUGCGCCCGAGCGCGGCCCGGUGG 1&4 chr1 377 395 + chr2 458 481 + 80.76 74.37 155.13 1.0 1.0 1.0 protein_coding miRNA ENST00000343605 ENST00000577708 +34 chr1 395 413 - chr2 510 533 - GCCGCGGCGAGCCGGGCC CCCAGCGGGGCUGGGCGCGCGGA .(((((.(..(((.((((&........)))).))))))))). -22.4 CCGCGGCGAGCCGGGCC GGCUGGGCGCGCGG 2&9 chr1 396 412 - chr2 518 524 - 47.43 2400.00 2447.43 1.0 1.0 1.0 protein_coding miRNA ENST00000371984 ENST00000584178 +23 chr1 413 431 + chr2 533 556 - GGACGGGCCCUUCCCGUG CCCAGCGGGGCUGGGCGCGCGGA .(.((.((((.((((((.&....))))))..)))).)))... -22.5 GACGGGCCCUUCCCGU GCGGGGCUGGGCGCGC 2&5 chr1 414 429 + chr2 537 549 - 35.89 2400.00 2435.89 1.0 0.83 0.83 CDS miRNA ENST00000305943 ENST00000584178 +22 chr1 431 471 - chr2 556 577 + UGCCUUCCCCGUCCGUCCGUCCGUCCGUCCAUCCGUCCAC GUAGGGGGCGGGCUCCGGCGC .........((.(((...((((((((..((..........&...))))))))))..))))). -20.7 CGUCCGUCCGUCCGUCCGUCC GGGGGCGGGCUCCGGCG 10&4 chr1 440 452 - chr2 559 573 + 14510.00 5016.00 19526.0 1.0 1.0 1.0 protein_coding miRNA ENST00000356861;ENST00000425528;ENST00000450764;ENST00000589149 ENST00000577388 +20 chr1 471 510 + chr2 577 612 + CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG (((((..((((((((((.((.((((((.(((........&.))).)))))).)))))))).)))).....))))) -49.4 CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG 1&2 chr1 471 502 + chr2 578 611 + 42.67 25.71 68.38 1.0 1.0 1.0 miRNA miRNA ENST00000615959 ENST00000581792 +20 chr1 510 545 + chr2 612 651 + UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU .(((.((((((.(((((((.(((((.....(((((&)))))..)))))))))).)).)))))).)))........ -49.4 GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC 2&1 chr1 511 544 + chr2 612 643 + 25.71 42.67 68.38 1.0 1.0 1.0 miRNA miRNA ENST00000615959 ENST00000615959 +20 chr1 545 698 + chr2 651 674 - GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG CCCAGCGGGGCUGGGCGCGCGGA .......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).))).. -26.5 CGCACUUGCGGCCCCGGGUUCCUCCCGGG CCCAGCGGGGCUGGGCGCGCG 104&1 chr1 648 574 + chr2 651 672 - 10610.00 2400.00 13010.0 1.0 0.83 0.83 rRNA miRNA ENST00000612463 ENST00000584178 +20 chr1 698 851 + chr2 674 697 - GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG CCCAGCGGGGCUGGGCGCGCGGA .......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).))).. -26.5 CGCACUUGCGGCCCCGGGUUCCUCCCGGG CCCAGCGGGGCUGGGCGCGCG 104&1 chr1 801 727 + chr2 674 695 - 10610.00 2400.00 13010.0 1.0 0.83 0.83 rRNA miRNA ENST00000610460 ENST00000584178 +20 chr1 851 1004 + chr2 697 720 - GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG CCCAGCGGGGCUGGGCGCGCGGA .......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).))).. -26.5 CGCACUUGCGGCCCCGGGUUCCUCCCGGG CCCAGCGGGGCUGGGCGCGCG 104&1 chr1 954 880 + chr2 697 718 - 10610.00 2400.00 13010.0 1.0 0.83 0.83 rRNA miRNA ENST00000613359 ENST00000584178 +20 chr1 1004 1157 + chr2 720 743 - GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG CCCAGCGGGGCUGGGCGCGCGGA .......................................................................................................(((.(.(.((((((((..........(((.....................&)))..)))))))).).).))).. -26.5 CGCACUUGCGGCCCCGGGUUCCUCCCGGG CCCAGCGGGGCUGGGCGCGCG 104&1 chr1 1107 1033 + chr2 720 741 - 10610.00 2400.00 13010.0 1.0 0.83 0.83 rRNA miRNA ENST00000619471 ENST00000584178 +20 chr1 1157 1196 + chr2 743 778 + CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG (((((..((((((((((.((.((((((.(((........&.))).)))))).)))))))).)))).....))))) -49.4 CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG 1&2 chr1 1157 1188 + chr2 744 777 + 42.67 25.71 68.38 1.0 1.0 1.0 miRNA miRNA ENST00000581792 ENST00000615959 +20 chr1 1196 1231 + chr2 778 817 + UGGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG CGCGACUGCGGCGGCGGUGGUGGGGGGAGCCGCGGGGAU .(((.((((((.(((((((.(((((.....(((((&)))))..)))))))))).)).)))))).)))........ -49.4 GGCGUCCCCUUCCCCGCCGGCCGCCUUUCUCGCG CGCGACUGCGGCGGCGGUGGUGGGGGGAGCC 2&1 chr1 1197 1230 + chr2 778 809 + 25.71 42.67 68.38 1.0 1.0 1.0 miRNA miRNA ENST00000581792 ENST00000581792 +20 chr1 1231 1384 + chr2 817 840 - NA NA NA NA NA NA NA chr1 1231 1384 + chr2 817 840 - 10610.00 2400.00 13010.0 1.0 0.83 0.83 rRNA miRNA ENST00000611446 ENST00000584178