Mercurial > repos > iuc > cherri_train
view macros.xml @ 3:a30b9df1775a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri commit 8778c3f71e295ec5b62ef3998319d211fc864e35
author | iuc |
---|---|
date | Wed, 25 Jan 2023 18:33:19 +0000 |
parents | f28df61581f4 |
children |
line wrap: on
line source
<macros> <token name="@VERSION@">0.7</token> <token name="@SUFFIX_VERSION@">0</token> <token name="@PROFILE@">21.05</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">cherri</requirement> </requirements> </xml> <macro name="reference_source_conditional"> <conditional name="ref_source"> <param name="ref_source_selector" type="select" label="Reference genome in FASTA format"> <option value="cached">locally cached</option> <option value="history">in your history</option> </param> <when value="cached"> <param name="genome_fasta" type="select" label="Select reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> <options from_data_table="all_fasta"> <filter type="sort_by" column="2" /> <validator type="no_options" message="No indices are available." /> </options> </param> </when> <when value="history"> <param name="genome_fasta" type="data" format="fasta" label="Select a reference dataset in FASTA format" /> </when> </conditional> <param name="chrom_len_file" type="data" format="tabular" label="Two column tabular file containing chromosome lengths" help="Format: 'chrom name' \t 'chrom length'" /> </macro> <token name="@COMMONPARAMS@" ><![CDATA[ #if $intarna_param_file: -p '$intarna_param_file' #end if -c '$context' -st $use_structure -t '$run_time' -me "\${GALAXY_MEMORY_MB_PER_SLOT:-8000}" -j "\${GALAXY_SLOTS:-1}" ]]></token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0080</edam_topic> <edam_topic>topic_0081</edam_topic> <edam_topic>topic_0160</edam_topic> </edam_topics> <edam_operations> <edam_operation>operation_2995</edam_operation> </edam_operations> </xml> <xml name="bio_tools"> <xrefs> <xref type="bio.tools">cherri</xref> </xrefs> </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">cherri</requirement> <yield/> </requirements> </xml> <xml name="citations"> <citations> <yield /> </citations> </xml> </macros>