diff test-data/cds_coordinates.tsv @ 3:ae1374a5ecdf draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8bb518e20d68623904232ae28bb8a51ec05c1c4a
author iuc
date Wed, 25 Sep 2024 14:14:22 +0000
parents 220e2f7ff8bb
children
line wrap: on
line diff
--- a/test-data/cds_coordinates.tsv	Fri Jun 07 14:27:26 2024 +0000
+++ b/test-data/cds_coordinates.tsv	Wed Sep 25 14:14:22 2024 +0000
@@ -1,115 +1,115 @@
 Genome	Contig	Start	Stop	Protein_ID	Coding_Strand
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	54	1463	1	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	1618	2754	2	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	2812	3705	3	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	3715	3912	4	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	4114	4317	5	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	4477	5592	6	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	5676	6251	7	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	6248	9745	8	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	10036	10308	9	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	10295	10666	10	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	10803	12089	11	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	12091	13365	12	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	13370	13912	13	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	13935	15911	14	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	17272	17466	15	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	23103	23297	17	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	92080	92274	88	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	20579	20866	16	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	26410	26697	18	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	95387	95674	89	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	28902	30245	19	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	30369	31337	20	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	31334	32620	21	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	32610	33371	22	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	33434	34312	23	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	34390	35382	24	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	35393	35632	25	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	35756	36460	26	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	36583	40308	27	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	40720	42174	28	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	42202	43224	29	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	43392	43940	30	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	43963	44715	31	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	44735	46282	32	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	46475	47374	33	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	47521	48825	34	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	49072	49770	35	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	49817	51133	36	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	51221	52108	37	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	52118	52948	38	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	52961	53404	39	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	53424	54086	40	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	54083	55000	41	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	55017	55898	42	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	55906	56883	43	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	56906	57709	44	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	57991	59256	45	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	59588	60025	46	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	60012	61103	47	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	61157	62548	48	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	62573	63871	49	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	64023	64934	50	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	65231	66229	51	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	66381	66818	52	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	66825	67205	53	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	67202	68980	54	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	69250	71892	55	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	72071	73087	56	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	73207	74697	57	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	74802	76082	58	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	76288	76596	59	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	76701	77327	60	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	77351	77974	61	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	77974	78270	62	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	78288	79121	63	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	79220	79498	64	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	79514	79858	65	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	79871	80524	66	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	80528	80941	67	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	80951	81157	68	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	81183	81443	69	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	81468	81836	70	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	81916	82221	71	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	82245	82787	72	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	82805	82990	73	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	83145	83543	74	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	83653	84189	75	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	84290	84646	76	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	84665	85159	77	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	85174	85353	78	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	85478	85918	79	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	85939	87243	80	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	87338	87976	81	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	88092	88310	82	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	88336	88452	83	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	88470	88835	84	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	88853	89236	85	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	89286	90224	86	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	90239	90625	87	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	97888	98076	90	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	98076	98246	91	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	98316	98486	92	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	98822	99082	93	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	99401	99952	94	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	100172	100591	95	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	100791	101270	96	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	101392	102084	97	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	102081	102833	98	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	102830	103405	99	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	103548	104582	100	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	104624	105157	101	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	105338	107167	102	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	107456	108595	103	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	108709	109956	104	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	110027	110803	105	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	110766	111524	106	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	111534	111998	107	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	111995	112564	108	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	112601	113443	109	-1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	113600	114883	110	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	115072	115647	111	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	115920	117524	112	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	117633	118559	113	1
-GCA_000007265_1_ASM726v1_genomic	AE009948.1	118754	119200	114	1
+GCA_000007265	AE009948.1	54	1463	1	1
+GCA_000007265	AE009948.1	1618	2754	2	1
+GCA_000007265	AE009948.1	2812	3705	3	1
+GCA_000007265	AE009948.1	3715	3912	4	1
+GCA_000007265	AE009948.1	4114	4317	5	1
+GCA_000007265	AE009948.1	4477	5592	6	1
+GCA_000007265	AE009948.1	5676	6251	7	1
+GCA_000007265	AE009948.1	6248	9745	8	1
+GCA_000007265	AE009948.1	10036	10308	9	1
+GCA_000007265	AE009948.1	10295	10666	10	1
+GCA_000007265	AE009948.1	10803	12089	11	1
+GCA_000007265	AE009948.1	12091	13365	12	1
+GCA_000007265	AE009948.1	13370	13912	13	1
+GCA_000007265	AE009948.1	13935	15911	14	1
+GCA_000007265	AE009948.1	17272	17466	15	-1
+GCA_000007265	AE009948.1	23103	23297	17	-1
+GCA_000007265	AE009948.1	92080	92274	88	-1
+GCA_000007265	AE009948.1	20579	20866	16	1
+GCA_000007265	AE009948.1	26410	26697	18	1
+GCA_000007265	AE009948.1	95387	95674	89	1
+GCA_000007265	AE009948.1	28902	30245	19	1
+GCA_000007265	AE009948.1	30369	31337	20	1
+GCA_000007265	AE009948.1	31334	32620	21	1
+GCA_000007265	AE009948.1	32610	33371	22	1
+GCA_000007265	AE009948.1	33434	34312	23	1
+GCA_000007265	AE009948.1	34390	35382	24	1
+GCA_000007265	AE009948.1	35393	35632	25	1
+GCA_000007265	AE009948.1	35756	36460	26	1
+GCA_000007265	AE009948.1	36583	40308	27	1
+GCA_000007265	AE009948.1	40720	42174	28	1
+GCA_000007265	AE009948.1	42202	43224	29	1
+GCA_000007265	AE009948.1	43392	43940	30	1
+GCA_000007265	AE009948.1	43963	44715	31	1
+GCA_000007265	AE009948.1	44735	46282	32	1
+GCA_000007265	AE009948.1	46475	47374	33	1
+GCA_000007265	AE009948.1	47521	48825	34	1
+GCA_000007265	AE009948.1	49072	49770	35	1
+GCA_000007265	AE009948.1	49817	51133	36	1
+GCA_000007265	AE009948.1	51221	52108	37	1
+GCA_000007265	AE009948.1	52118	52948	38	1
+GCA_000007265	AE009948.1	52961	53404	39	1
+GCA_000007265	AE009948.1	53424	54086	40	1
+GCA_000007265	AE009948.1	54083	55000	41	1
+GCA_000007265	AE009948.1	55017	55898	42	1
+GCA_000007265	AE009948.1	55906	56883	43	1
+GCA_000007265	AE009948.1	56906	57709	44	-1
+GCA_000007265	AE009948.1	57991	59256	45	1
+GCA_000007265	AE009948.1	59588	60025	46	1
+GCA_000007265	AE009948.1	60012	61103	47	1
+GCA_000007265	AE009948.1	61157	62548	48	1
+GCA_000007265	AE009948.1	62573	63871	49	1
+GCA_000007265	AE009948.1	64023	64934	50	1
+GCA_000007265	AE009948.1	65231	66229	51	1
+GCA_000007265	AE009948.1	66381	66818	52	1
+GCA_000007265	AE009948.1	66825	67205	53	1
+GCA_000007265	AE009948.1	67202	68980	54	1
+GCA_000007265	AE009948.1	69250	71892	55	1
+GCA_000007265	AE009948.1	72071	73087	56	1
+GCA_000007265	AE009948.1	73207	74697	57	1
+GCA_000007265	AE009948.1	74802	76082	58	1
+GCA_000007265	AE009948.1	76288	76596	59	1
+GCA_000007265	AE009948.1	76701	77327	60	1
+GCA_000007265	AE009948.1	77351	77974	61	1
+GCA_000007265	AE009948.1	77974	78270	62	1
+GCA_000007265	AE009948.1	78288	79121	63	1
+GCA_000007265	AE009948.1	79220	79498	64	1
+GCA_000007265	AE009948.1	79514	79858	65	1
+GCA_000007265	AE009948.1	79871	80524	66	1
+GCA_000007265	AE009948.1	80528	80941	67	1
+GCA_000007265	AE009948.1	80951	81157	68	1
+GCA_000007265	AE009948.1	81183	81443	69	1
+GCA_000007265	AE009948.1	81468	81836	70	1
+GCA_000007265	AE009948.1	81916	82221	71	1
+GCA_000007265	AE009948.1	82245	82787	72	1
+GCA_000007265	AE009948.1	82805	82990	73	1
+GCA_000007265	AE009948.1	83145	83543	74	1
+GCA_000007265	AE009948.1	83653	84189	75	1
+GCA_000007265	AE009948.1	84290	84646	76	1
+GCA_000007265	AE009948.1	84665	85159	77	1
+GCA_000007265	AE009948.1	85174	85353	78	1
+GCA_000007265	AE009948.1	85478	85918	79	1
+GCA_000007265	AE009948.1	85939	87243	80	1
+GCA_000007265	AE009948.1	87338	87976	81	1
+GCA_000007265	AE009948.1	88092	88310	82	1
+GCA_000007265	AE009948.1	88336	88452	83	1
+GCA_000007265	AE009948.1	88470	88835	84	1
+GCA_000007265	AE009948.1	88853	89236	85	1
+GCA_000007265	AE009948.1	89286	90224	86	1
+GCA_000007265	AE009948.1	90239	90625	87	1
+GCA_000007265	AE009948.1	97888	98076	90	1
+GCA_000007265	AE009948.1	98076	98246	91	1
+GCA_000007265	AE009948.1	98316	98486	92	1
+GCA_000007265	AE009948.1	98822	99082	93	-1
+GCA_000007265	AE009948.1	99401	99952	94	1
+GCA_000007265	AE009948.1	100172	100591	95	1
+GCA_000007265	AE009948.1	100791	101270	96	1
+GCA_000007265	AE009948.1	101392	102084	97	1
+GCA_000007265	AE009948.1	102081	102833	98	1
+GCA_000007265	AE009948.1	102830	103405	99	1
+GCA_000007265	AE009948.1	103548	104582	100	1
+GCA_000007265	AE009948.1	104624	105157	101	1
+GCA_000007265	AE009948.1	105338	107167	102	1
+GCA_000007265	AE009948.1	107456	108595	103	1
+GCA_000007265	AE009948.1	108709	109956	104	1
+GCA_000007265	AE009948.1	110027	110803	105	1
+GCA_000007265	AE009948.1	110766	111524	106	1
+GCA_000007265	AE009948.1	111534	111998	107	1
+GCA_000007265	AE009948.1	111995	112564	108	1
+GCA_000007265	AE009948.1	112601	113443	109	-1
+GCA_000007265	AE009948.1	113600	114883	110	1
+GCA_000007265	AE009948.1	115072	115647	111	1
+GCA_000007265	AE009948.1	115920	117524	112	1
+GCA_000007265	AE009948.1	117633	118559	113	1
+GCA_000007265	AE009948.1	118754	119200	114	1