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annotate test-data/allelecallevaluator_report_annotate.html @ 2:a707d4098f09 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 501c1cb91f4b91ec93e6df6e555323bbe8e2b703
author iuc
date Fri, 07 Jun 2024 14:27:08 +0000
parents 4683f2baa5f0
children f502e55c34a3
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18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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2 <!DOCTYPE html>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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3 <html lang="en">
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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4 <head>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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5 <meta charset="UTF-8" />
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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6 <meta name="viewport" content="width=device-width, initial-scale=1.0" />
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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7 <title>AlleleCall Report - React Edition</title>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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8 </head>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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9 <body style="background-color: #f6f6f6">
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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10 <noscript> You need to enable JavaScript to run this app. </noscript>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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11 <div id="root"></div>
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4683f2baa5f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 2564b0ca982636c6c6f221d0c5072f52d39e6751
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12 <script> preComputedData = {"summaryData": [{"columns": ["Total Samples", "Total Loci", "Total CDSs", "Total CDSs Classified", "EXC", "INF", "PLOT3", "PLOT5", "LOTSC", "NIPH", "NIPHEM", "ALM", "ASM", "PAMA", "LNF"]}, {"rows": [[1, 102, 114, 104, 101, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]]}], "sample_ids": ["GCA_000007265_1_ASM726v1_genomic"], "sample_data": [[101], [0], [0], [0], [0], [0], [1], [0], [0], [0], [0]], "loci_ids": ["GCA-000007265-protein1", "GCA-000007265-protein58", "GCA-000007265-protein67", "GCA-000007265-protein66", "GCA-000007265-protein65", "GCA-000007265-protein64", "GCA-000007265-protein63", "GCA-000007265-protein62", "GCA-000007265-protein61", "GCA-000007265-protein60", "GCA-000007265-protein6", "GCA-000007265-protein59", "GCA-000007265-protein57", "GCA-000007265-protein69", "GCA-000007265-protein56", "GCA-000007265-protein55", "GCA-000007265-protein54", "GCA-000007265-protein53", "GCA-000007265-protein52", "GCA-000007265-protein51", "GCA-000007265-protein50", "GCA-000007265-protein5", "GCA-000007265-protein49", "GCA-000007265-protein48", "GCA-000007265-protein68", "GCA-000007265-protein7", "GCA-000007265-protein10", "GCA-000007265-protein84", "GCA-000007265-protein98", "GCA-000007265-protein97", "GCA-000007265-protein96", "GCA-000007265-protein95", "GCA-000007265-protein94", "GCA-000007265-protein93", "GCA-000007265-protein9", "GCA-000007265-protein87", "GCA-000007265-protein86", "GCA-000007265-protein85", "GCA-000007265-protein82", "GCA-000007265-protein70", "GCA-000007265-protein81", "GCA-000007265-protein80", "GCA-000007265-protein8", "GCA-000007265-protein79", "GCA-000007265-protein77", "GCA-000007265-protein76", "GCA-000007265-protein75", "GCA-000007265-protein74", "GCA-000007265-protein72", "GCA-000007265-protein71", "GCA-000007265-protein47", "GCA-000007265-protein46", "GCA-000007265-protein45", "GCA-000007265-protein44", "GCA-000007265-protein2", "GCA-000007265-protein19", "GCA-000007265-protein14", "GCA-000007265-protein13", "GCA-000007265-protein12", "GCA-000007265-protein114", "GCA-000007265-protein113", "GCA-000007265-protein112", "GCA-000007265-protein111", "GCA-000007265-protein110", "GCA-000007265-protein11", "GCA-000007265-protein109", "GCA-000007265-protein108", "GCA-000007265-protein107", "GCA-000007265-protein106", "GCA-000007265-protein105", "GCA-000007265-protein104", "GCA-000007265-protein103", "GCA-000007265-protein102", "GCA-000007265-protein101", "GCA-000007265-protein100", "GCA-000007265-protein20", "GCA-000007265-protein21", "GCA-000007265-protein22", "GCA-000007265-protein33", "GCA-000007265-protein43", "GCA-000007265-protein42", "GCA-000007265-protein41", "GCA-000007265-protein40", "GCA-000007265-protein39", "GCA-000007265-protein38", "GCA-000007265-protein37", "GCA-000007265-protein36", "GCA-000007265-protein35", "GCA-000007265-protein34", "GCA-000007265-protein32", "GCA-000007265-protein23", "GCA-000007265-protein31", "GCA-000007265-protein30", "GCA-000007265-protein3", 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["GCA-000007265-protein100", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein20", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein21", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein22", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein33", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein43", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein42", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein41", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein40", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein39", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein38", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein37", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein36", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], 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["GCA-000007265-protein99", 1, 1, 0, 1.0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], ["GCA-000007265-protein16", 3, 0, 1, 0.0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]]}], "annotations": [{"columns": ["Locus", "Genome", "Contig", "Start", "Stop", "Protein_ID", "Coding_Strand", "Uniprot_Name", "UniProt_URL", "Proteome_ID", "Proteome_Product", "Proteome_Gene_Name", "Proteome_Species", "Proteome_BSR"]}, {"rows": [["GCA-000007265-protein111", "GCA_000007265", "AE009948.1", "115072", "115647", "111", "1", "Probable DNA-directed RNA polymerase subunit delta", "http://purl.uniprot.org/uniprot/Q3K3S3", "", "", "", "", ""], ["GCA-000007265-protein25", "GCA_000007265", "AE009948.1", "35393", "35632", "25", "1", "Acyl carrier protein", "http://purl.uniprot.org/uniprot/Q8E7X3", "", "", "", "", ""], ["GCA-000007265-protein101", "GCA_000007265", "AE009948.1", "104624", "105157", "101", "1", "Protein GrpE", "http://purl.uniprot.org/uniprot/Q3K3T3", "", "", "", "", ""], ["GCA-000007265-protein31", "GCA_000007265", 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"60", "1", "Large ribosomal subunit protein uL3", "http://purl.uniprot.org/uniprot/Q3K3W9", "", "", "", "", ""], ["GCA-000007265-protein48", "GCA_000007265", "AE009948.1", "61157", "62548", "48", "1", "Beta-carotene 15,15'-monooxygenase", "http://purl.uniprot.org/uniprot/A0A1F0CGC5", "", "", "", "", ""], ["GCA-000007265-protein114", "GCA_000007265", "AE009948.1", "118754", "119200", "114", "1", "dUTP diphosphatase", "http://purl.uniprot.org/uniprot/A0A0H1FVA3", "", "", "", "", ""], ["GCA-000007265-protein45", "GCA_000007265", "AE009948.1", "57991", "59256", "45", "1", "Phosphoribosylamine--glycine ligase", "http://purl.uniprot.org/uniprot/A0A0E1EEK4", "", "", "", "", ""], ["GCA-000007265-protein21", "GCA_000007265", "AE009948.1", "31334", "32620", "21", "1", "", "", "", "", "", "", ""], ["GCA-000007265-protein81", "GCA_000007265", "AE009948.1", "87338", "87976", "81", "1", "Adenylate kinase", "http://purl.uniprot.org/uniprot/P65203", "", "", "", "", ""], ["GCA-000007265-protein33", 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"diacylglycerol kinase family protein", "http://purl.uniprot.org/uniparc/UPI0002BB2C63", "", "", "", "", ""], ["GCA-000007265-protein7", "GCA_000007265", "AE009948.1", "5676", "6251", "7", "1", "Peptidyl-tRNA hydrolase", "http://purl.uniprot.org/uniprot/Q8E2I1", "", "", "", "", ""], ["GCA-000007265-protein53", "GCA_000007265", "AE009948.1", "66825", "67205", "53", "1", "MORN motif family protein", "http://purl.uniprot.org/uniprot/A0A1F0CHD6", "", "", "", "", ""], ["GCA-000007265-protein16", "GCA_000007265", "AE009948.1", "20579", "20866", "16", "1", "RNAase", "http://purl.uniprot.org/uniprot/U5P1X6", "", "", "", "", ""], ["GCA-000007265-protein63", "GCA_000007265", "AE009948.1", "78288", "79121", "63", "1", "Large ribosomal subunit protein uL2", "http://purl.uniprot.org/uniprot/Q3K3W6", "", "", "", "", ""], ["GCA-000007265-protein26", "GCA_000007265", "AE009948.1", "35756", "36460", "26", "1", "Phosphoribosylaminoimidazole-succinocarboxamide synthase", "http://purl.uniprot.org/uniprot/Q8E2G4", "", "", "", "", ""], ["GCA-000007265-protein106", "GCA_000007265", "AE009948.1", "110766", "111524", "106", "1", "pyridoxal kinase", "http://purl.uniprot.org/uniprot/Q8E7Q4", "", "", "", "", ""], ["GCA-000007265-protein37", "GCA_000007265", "AE009948.1", "51221", "52108", "37", "1", "ABC transmembrane type-1 domain-containing protein", "http://purl.uniprot.org/uniprot/Q8E7W1", "", "", "", "", ""], ["GCA-000007265-protein5", "GCA_000007265", "AE009948.1", "4114", "4317", "5", "1", "Gbs0005 protein", "http://purl.uniprot.org/uniprot/Q8E7Z0", "", "", "", "", ""], ["GCA-000007265-protein71", "GCA_000007265", "AE009948.1", "81916", "82221", "71", "1", "Large ribosomal subunit protein uL24", "http://purl.uniprot.org/uniprot/Q3K3V8", "", "", "", "", ""], ["GCA-000007265-protein68", "GCA_000007265", "AE009948.1", "80951", "81157", "68", "1", "Large ribosomal subunit protein uL29", "http://purl.uniprot.org/uniprot/A2RC22", "", "", "", "", ""], ["GCA-000007265-protein47", "GCA_000007265", "AE009948.1", "60012", "61103", "47", "1", "N5-carboxyaminoimidazole ribonucleotide synthase", "http://purl.uniprot.org/uniprot/A0A0E1EJA7", "", "", "", "", ""], ["GCA-000007265-protein99", "GCA_000007265", "AE009948.1", "102830", "103405", "99", "1", "Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain-containing protein", "http://purl.uniprot.org/uniprot/Q8E7R0", "", "", "", "", ""], ["GCA-000007265-protein102", "GCA_000007265", "AE009948.1", "105338", "107167", "102", "1", "Chaperone protein DnaK", "http://purl.uniprot.org/uniprot/P0A3J2", "", "", "", "", ""], ["GCA-000007265-protein96", "GCA_000007265", "AE009948.1", "100791", "101270", "96", "1", "Competence-specific sigma factor ComX", "http://purl.uniprot.org/uniprot/Q8E7R3", "", "", "", "", ""], ["GCA-000007265-protein66", "GCA_000007265", "AE009948.1", "79871", "80524", "66", "1", "Small ribosomal subunit protein uS3", "http://purl.uniprot.org/uniprot/A2RC20", "", "", "", "", ""], ["GCA-000007265-protein20", "GCA_000007265", "AE009948.1", "30369", "31337", "20", "1", "Ribose-phosphate pyrophosphokinase 1", "http://purl.uniprot.org/uniprot/Q8E2H0", "", "", "", "", ""], ["GCA-000007265-protein57", "GCA_000007265", "AE009948.1", "73207", "74697", "57", "1", "Threonine synthase", "http://purl.uniprot.org/uniprot/A0A0E1EJC0", "", "", "", "", ""], ["GCA-000007265-protein42", "GCA_000007265", "AE009948.1", "55017", "55898", "42", "1", "N-acetylmannosamine kinase", "http://purl.uniprot.org/uniprot/A0A0E1EJA4", "", "", "", "", ""], ["GCA-000007265-protein14", "GCA_000007265", "AE009948.1", "13935", "15911", "14", "1", "ATP-dependent zinc metalloprotease FtsH", "http://purl.uniprot.org/uniprot/Q8E7Y0", "", "", "", "", ""], ["GCA-000007265-protein76", "GCA_000007265", "AE009948.1", "84290", "84646", "76", "1", "Large ribosomal subunit protein uL18", "http://purl.uniprot.org/uniprot/Q3K3V3", "", "", "", "", ""], ["GCA-000007265-protein98", "GCA_000007265", "AE009948.1", "102081", "102833", "98", "1", "Peptidase M15B domain-containing protein", "http://purl.uniprot.org/uniprot/Q8E7R1", "", "", "", "", ""], ["GCA-000007265-protein64", "GCA_000007265", "AE009948.1", "79220", "79498", "64", "1", "Small ribosomal subunit protein uS19", "http://purl.uniprot.org/uniprot/Q1JE54", "", "", "", "", ""], ["GCA-000007265-protein52", "GCA_000007265", "AE009948.1", "66381", "66818", "52", "1", "protein-tyrosine-phosphatase", "http://purl.uniprot.org/uniprot/A0A0E1EJB3", "", "", "", "", ""], ["GCA-000007265-protein10", "GCA_000007265", "AE009948.1", "10295", "10666", "10", "1", "Cell division protein DivIC", "http://purl.uniprot.org/uniprot/Q8E7Y5", "", "", "", "", ""]]}], "presence_absence": [{"rows": [[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 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"GCA-000007265-protein9", "GCA-000007265-protein87", "GCA-000007265-protein86", "GCA-000007265-protein85", "GCA-000007265-protein82", "GCA-000007265-protein70", "GCA-000007265-protein81", "GCA-000007265-protein80", "GCA-000007265-protein8", "GCA-000007265-protein79", "GCA-000007265-protein77", "GCA-000007265-protein76", "GCA-000007265-protein75", "GCA-000007265-protein74", "GCA-000007265-protein72", "GCA-000007265-protein71", "GCA-000007265-protein47", "GCA-000007265-protein46", "GCA-000007265-protein45", "GCA-000007265-protein44", "GCA-000007265-protein2", "GCA-000007265-protein19", "GCA-000007265-protein14", "GCA-000007265-protein13", "GCA-000007265-protein12", "GCA-000007265-protein114", "GCA-000007265-protein113", "GCA-000007265-protein112", "GCA-000007265-protein111", "GCA-000007265-protein110", "GCA-000007265-protein11", "GCA-000007265-protein109", "GCA-000007265-protein108", "GCA-000007265-protein107", "GCA-000007265-protein106", "GCA-000007265-protein105", "GCA-000007265-protein104", "GCA-000007265-protein103", "GCA-000007265-protein102", "GCA-000007265-protein101", "GCA-000007265-protein100", "GCA-000007265-protein20", "GCA-000007265-protein21", "GCA-000007265-protein22", "GCA-000007265-protein33", "GCA-000007265-protein43", "GCA-000007265-protein42", "GCA-000007265-protein41", "GCA-000007265-protein40", "GCA-000007265-protein39", "GCA-000007265-protein38", "GCA-000007265-protein37", "GCA-000007265-protein36", "GCA-000007265-protein35", "GCA-000007265-protein34", "GCA-000007265-protein32", "GCA-000007265-protein23", "GCA-000007265-protein31", "GCA-000007265-protein30", "GCA-000007265-protein3", "GCA-000007265-protein29", "GCA-000007265-protein28", "GCA-000007265-protein27", "GCA-000007265-protein26", "GCA-000007265-protein25", "GCA-000007265-protein24", "GCA-000007265-protein99", "GCA-000007265-protein16"]}, {"sample_ids": ["GCA_000007265_1_ASM726v1_genomic"]}], "distance_matrix": [{"rows": [[0]]}, {"sample_ids": ["GCA_000007265_1_ASM726v1_genomic"]}], "cgMLST_tree": {"phylo_data": "(GCA_000007265_1_ASM726v1_genomic:0.000000000);\n"}, "cgMLST_size": [{"cgMLST100": 101}]} </script>
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18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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14 </body>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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15 </html>
18d7d8582206 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
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