Mercurial > repos > iuc > chewbbaca_nsstats
comparison macros.xml @ 0:ebbbb3265867 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 8722918e903ffa4229e0297555731f1172f736c6
author | iuc |
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date | Sat, 13 Apr 2024 16:09:46 +0000 |
parents | |
children | 5207cb4e31a2 |
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-1:000000000000 | 0:ebbbb3265867 |
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1 <macros> | |
2 <token name="@CHEW_VERSION@">3.3.3</token> | |
3 <token name="@VERSION_SUFFIX@">0</token> | |
4 <token name="@PROFILE@">22.05</token> | |
5 <xml name="requirements"> | |
6 <requirements> | |
7 <requirement type="package" version="@CHEW_VERSION@">chewbbaca</requirement> | |
8 <requirement type="package" version="2.15.0">blast</requirement> | |
9 <requirement type="package" version="3.0">zip</requirement> | |
10 <requirement type="package" version="2.1.11">fasttree</requirement> | |
11 <yield/> | |
12 </requirements> | |
13 </xml> | |
14 <xml name="citations"> | |
15 <citations> | |
16 <citation type="doi">10.1099/mgen.0.000166</citation> | |
17 </citations> | |
18 </xml> | |
19 <xml name="species_id"> | |
20 <option value="1">Streptococcus pyogenes</option> | |
21 <option value="2">Acinetobacter baumannii</option> | |
22 <option value="3">Arcobacter butzleri</option> | |
23 <option value="4">Campylobacter jejuni</option> | |
24 <option value="5">Escherichia coli</option> | |
25 <option value="6">Listeria monocytogenes</option> | |
26 <option value="7">Yersinia enterocolitica</option> | |
27 <option value="8">Salmonella enterica</option> | |
28 <option value="9">Streptococcus agalactiae</option> | |
29 <option value="10">Brucella melitensis</option> | |
30 <option value="11">Brucella</option> | |
31 <option value="12">Clostridium perfringens</option> | |
32 <option value="13">Clostridium chauvoei</option> | |
33 <option value="14">Bacillus anthracis</option> | |
34 <option value="15">Klebsiella oxytoca</option> | |
35 <option value="16">Clostridium neonatale</option> | |
36 </xml> | |
37 <token name="@COMMON_INPUT@"> | |
38 --bsr $blast_score_ratio | |
39 --l $minimum_length | |
40 --t $translation_table | |
41 --st $size_threshold | |
42 </token> | |
43 <xml name="common_param"> | |
44 <param argument="--blast_score-ratio" type="float" min="0.0" max="1.0" value="0.6" label="BLAST Score Ratio value" /> | |
45 <param argument="--translation-table" type="integer" min="0" value="11" label="Genetic code used to predict genes and to translate coding sequences"/> | |
46 <param argument="--size-threshold" type="float" min="0" value="0.2" label="CDS size variation threshold"/> | |
47 </xml> | |
48 </macros> |