Mercurial > repos > iuc > chira_map
comparison chira_map.xml @ 3:39bb70c2764e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit aafb8e5de9023eeddd7f4683909f418ef5aae086"
| author | iuc |
|---|---|
| date | Fri, 20 Mar 2020 04:58:46 -0400 |
| parents | 6c398f64ad6a |
| children | 1d3be7700f70 |
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| 2:7ab33ce63e4d | 3:39bb70c2764e |
|---|---|
| 98 <param name="ref_fasta1" value="ref1.fasta"/> | 98 <param name="ref_fasta1" value="ref1.fasta"/> |
| 99 <param name="ref_fasta2" value="ref2.fasta"/> | 99 <param name="ref_fasta2" value="ref2.fasta"/> |
| 100 <param name="unmapped" value="True"/> | 100 <param name="unmapped" value="True"/> |
| 101 <output name="mapped_bed" > | 101 <output name="mapped_bed" > |
| 102 <assert_contents> | 102 <assert_contents> |
| 103 <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2|2,mmu-miR-6898-5p,11,21,+,10M39S\t0\t+" /> | 103 <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2\|2,mmu-miR-6898-5p,11,21,\+,10M39S\t1\t\+" /> |
| 104 </assert_contents> | 104 </assert_contents> |
| 105 </output> | 105 </output> |
| 106 <output name="unmapped_fasta" > | 106 <output name="unmapped_fasta" > |
| 107 <assert_contents> | 107 <assert_contents> |
| 108 <has_text_matching expression="AAAAGACTCTGTAGACATGGCTGGTCTTGAACTCACAGAGATTTGTCTGCCTTTC" /> | 108 <has_text_matching expression="AAAAGACTCTGTAGACATGGCTGGTCTTGAACTCACAGAGATTTGTCTGCCTTTC" /> |
| 113 <test expect_num_outputs="1"> | 113 <test expect_num_outputs="1"> |
| 114 <param name="aligner" value="clan"/> | 114 <param name="aligner" value="clan"/> |
| 115 <param name="query" value="reads.fasta"/> | 115 <param name="query" value="reads.fasta"/> |
| 116 <param name="ref_type" value="split"/> | 116 <param name="ref_type" value="split"/> |
| 117 <param name="ref_fasta1" value="ref1.fasta"/> | 117 <param name="ref_fasta1" value="ref1.fasta"/> |
| 118 <param name="ref_fasta2" value="ref2.fasta"/> | 118 <param name="ref_fasta2" value="ref2.fasta"/> |
| 119 <param name="unmapped" value="True"/> | 119 <param name="unmapped" value="True"/> |
| 120 <output name="mapped_bed" > | 120 <output name="mapped_bed" > |
| 121 <assert_contents> | 121 <assert_contents> |
| 122 <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3|2,mmu-miR-20a-5p,0,23,+,5S23M27S\t0\t+" /> | 122 <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3\|2,mmu-miR-20a-5p,0,23,\+,5S23M27S\t1\t\+" /> |
| 123 </assert_contents> | 123 </assert_contents> |
| 124 </output> | 124 </output> |
| 125 </test> | 125 </test> |
| 126 </tests> | 126 </tests> |
| 127 <help> | 127 <help> |