Mercurial > repos > iuc > chira_map

diff chira_map.xml @ 8:b91f9fcd9fc7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit a69b18084d0a9ade4e29869f8b0e2ce5fc4e0b73"
author iuc
date Sat, 06 Jun 2020 08:12:07 -0400
parents 6b83059e8f34
children 95ddee768b61
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line diff
--- a/chira_map.xml	Fri May 29 06:56:20 2020 -0400
+++ b/chira_map.xml	Sat Jun 06 08:12:07 2020 -0400
@@ -74,16 +74,16 @@
                 </param>
                 <param name="seed_length1" type="integer" value="12" label="Seed length 1" min="1"
                        help="Seed length for 1st mapping iteration. bwa-mem parameter -k"/>
-                <param name="seed_length2" type="integer" value="6" label="Seed length 2" min="1"
+                <param name="seed_length2" type="integer" value="16" label="Seed length 2" min="1"
                       help="Seed length for 2nd mapping iteration. bwa-mem parameter -k"/>
                 <param name="align_score1" type="integer" value="18" min="1"
                        label="Minimum alignmnet score for 1st mapping iteration" help="bwa-mem parameter '-T'"/>
-                <param name="align_score2" type="integer" value="10" min="1"
+                <param name="align_score2" type="integer" value="16" min="1"
                        label="Minimum alignmnet score for 2nd mapping iteration" help="bwa-mem parameter '-T'"/>
                 <param name="match1" type="integer" value="1" label="Matching score for 1st mapping iteration"/>
                 <param name="mismatch1" type="integer" value="4" label="Mismatch penalty for 1st mapping iteration"/>
                 <param name="match2" type="integer" value="1" label="Matching score for 2nd mapping iteration"/>
-                <param name="mismatch2" type="integer" value="7" label="Mismatch penalty for 2nd mapping iteration"/>
+                <param name="mismatch2" type="integer" value="6" label="Mismatch penalty for 2nd mapping iteration"/>
                 <param name="gapo1" type="integer" value="6" label="Gap opening penalty for 1st mapping iteration"/>
                 <param name="gape1" type="integer" value="1" label="Gap extension penalty for 1st mapping iteration"/>
                 <param name="gapo2" type="integer" value="100" label="Gap opening penalty for 2nd mapping iteration"/>