# HG changeset patch
# User iuc
# Date 1597438016 14400
# Node ID c097b1f8343972ecffe2065d85735ef0cd5b112a
# Parent  62f0216cdfab4f34ba8a0944646fad6a0e26cdbf
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit db6089d9452f1ecd5235c91817bde2ee9431cb4f"

diff -r 62f0216cdfab -r c097b1f83439 macros.xml
--- a/macros.xml	Thu Aug 13 02:42:39 2020 -0400
+++ b/macros.xml	Fri Aug 14 16:46:56 2020 -0400
@@ -1,6 +1,6 @@
 <macros>
     <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy</token>
-    <token name="@TOOL_VERSION@">1.4.0</token>
+    <token name="@TOOL_VERSION@">1.4.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">chira</requirement>
diff -r 62f0216cdfab -r c097b1f83439 test-data/chimeras
--- a/test-data/chimeras	Thu Aug 13 02:42:39 2020 -0400
+++ b/test-data/chimeras	Fri Aug 14 16:46:56 2020 -0400
@@ -1,3 +1,3 @@
 tagid	txid1	txid2	geneid1	geneid2	symbol1	symbol2	region1	region2	tx_pos_start1	tx_pos_end1	tx_pos_strand1	length1	tx_pos_start2	tx_pos_end2	tx_pos_strand2	length2	read_info	genomic_pos1	genomic_pos2	locus1	locus2	groupid1	groupid2	tpm1	tpm2	score1	score2	score	sequences	hybrid	hybrid_pos	mfe
-3|2	mmu-miR-20a-5p	ENSMUST00000136025	NA	NA	NA	NA	NA	NA	0	23	+	23	132	142	+	188	6,28,35,44,55	mmu-miR-20a-5p:0:23:+	ENSMUST00000136025:132:142:+	mmu-miR-20a-5p:0:23:+	ENSMUST00000136025:132:142:+	5	2	75660.00	165100.00	1.0	1.0	2.0	UAAAGUGCUUAUAGUGCAGGUAG&CUGCCUGCCU	............((.((((((((&))))))))))	13&1	-13.7
-4|1	mmu-miR-6979-3p	ENSMUST00000136025	NA	NA	NA	NA	NA	NA	2	12	+	21	32	46	+	188	30,39,2,15,54	mmu-miR-6979-3p:2:12:+	ENSMUST00000136025:32:46:+	mmu-miR-6979-3p:2:12:+	ENSMUST00000136025:32:46:+	7	1	165100.00	121100.00	1.0	1.0	2.0	GUGUCUGUCU&CAGGACUCUUGGCU	NA	NA	NA
+3|2	mmu-miR-20a-5p	ENSMUST00000136025	NA	NA	NA	NA	NA	NA	0	23	+	23	132	142	+	188	6,28,35,44,55	mmu-miR-20a-5p:0:23:+	ENSMUST00000136025:132:142:+	mmu-miR-20a-5p:0:23:+	ENSMUST00000136025:132:142:+	5	2	75660.00	165100.00	1.0	1.0	1.0	UAAAGUGCUUAUAGUGCAGGUAG&CUGCCUGCCU	............((.((((((((&))))))))))	13&1	-13.7
+4|1	mmu-miR-6979-3p	ENSMUST00000136025	NA	NA	NA	NA	NA	NA	2	12	+	21	32	46	+	188	30,39,2,15,54	mmu-miR-6979-3p:2:12:+	ENSMUST00000136025:32:46:+	mmu-miR-6979-3p:2:12:+	ENSMUST00000136025:32:46:+	7	1	165100.00	121100.00	1.0	1.0	1.0	GUGUCUGUCU&CAGGACUCUUGGCU	NA	NA	NA
diff -r 62f0216cdfab -r c097b1f83439 test-data/interactions
--- a/test-data/interactions	Thu Aug 13 02:42:39 2020 -0400
+++ b/test-data/interactions	Fri Aug 14 16:46:56 2020 -0400
@@ -1,2 +1,2 @@
-1	mmu-miR-20a-5p	0	23	+	ENSMUST00000136025	132	142	+	UAAAGUGCUUAUAGUGCAGGUAG	CUGCCUGCCU	............((.((((((((&))))))))))	-13.7	AGUGCAGGUAG	CUGCCUGCCU	13&1	mmu-miR-20a-5p	12	23	+	ENSMUST00000136025	132	142	+	75660.00	165100.00	240760.0	1.0	1.0	2.0	NA	NA	mmu-miR-20a-5p	ENSMUST00000136025
-1	mmu-miR-6979-3p	2	12	+	ENSMUST00000136025	32	46	+	GUGUCUGUCU	CAGGACUCUUGGCU	NA	NA	NA	NA	NA	mmu-miR-6979-3p	2	12	+	ENSMUST00000136025	32	46	+	165100.00	121100.00	286200.0	1.0	1.0	2.0	NA	NA	mmu-miR-6979-3p	ENSMUST00000136025
+1	mmu-miR-20a-5p	0	23	+	ENSMUST00000136025	132	142	+	UAAAGUGCUUAUAGUGCAGGUAG	CUGCCUGCCU	............((.((((((((&))))))))))	-13.7	AGUGCAGGUAG	CUGCCUGCCU	13&1	mmu-miR-20a-5p	12	23	+	ENSMUST00000136025	132	142	+	75660.00	165100.00	240760.0	1.0	1.0	1.0	NA	NA	mmu-miR-20a-5p	ENSMUST00000136025
+1	mmu-miR-6979-3p	2	12	+	ENSMUST00000136025	32	46	+	GUGUCUGUCU	CAGGACUCUUGGCU	NA	NA	NA	NA	NA	mmu-miR-6979-3p	2	12	+	ENSMUST00000136025	32	46	+	165100.00	121100.00	286200.0	1.0	1.0	1.0	NA	NA	mmu-miR-6979-3p	ENSMUST00000136025