view test-data/annotation.gtf @ 0:5db894671434 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit e4f841daf49048d6c656d50cffb344b53eebeec2"
author iuc
date Sun, 19 Jan 2020 16:31:34 -0500
parents
children 35f433d0bd7f
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14	.	miRNA	115044183	115044205	.	+	.	ID=MIMAT0000529;Alias=MIMAT0000529;Name=mmu-miR-20a-5p;Derives_from=MI0000568
16	.	miRNA	93369775	93369796	.	+	.	ID=MIMAT0017240;Alias=MIMAT0017240;Name=mmu-miR-802-3p;Derives_from=MI0004249
1	.	miRNA	36348732	36348753	.	-	.	ID=MIMAT0027696;Alias=MIMAT0027696;Name=mmu-miR-6898-5p;Derives_from=MI0022745
18	.	miRNA	37854605	37854625	.	-	.	ID=MIMAT0027861;Alias=MIMAT0027861;Name=mmu-miR-6979-3p;Derives_from=MI0022827
11	havana	transcript	116338339	116347444	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3";
11	havana	exon	116347342	116347444	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; exon_number "1"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSMUSE00000834936"; exon_version "1"; transcript_support_level "3";
11	havana	exon	116347033	116347098	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; exon_number "2"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSMUSE00001212609"; exon_version "1"; transcript_support_level "3";
11	havana	exon	116345907	116345955	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; exon_number "3"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSMUSE00001217820"; exon_version "1"; transcript_support_level "3";
11	havana	exon	116340338	116340378	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; exon_number "4"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSMUSE00001233021"; exon_version "1"; transcript_support_level "3";
11	havana	exon	116338339	116338830	.	-	.	gene_id "ENSMUSG00000052949"; gene_version "10"; transcript_id "ENSMUST00000137264"; transcript_version "1"; exon_number "5"; gene_name "Rnf157"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Rnf157-011"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSMUSE00000796470"; exon_version "1"; transcript_support_level "3";
2	havana	transcript	128237693	128239643	.	-	.	gene_id "ENSMUSG00000086879"; gene_version "1"; transcript_id "ENSMUST00000136025"; transcript_version "1"; gene_name "Gm14012"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Gm14012-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "1";
2	havana	exon	128239424	128239643	.	-	.	gene_id "ENSMUSG00000086879"; gene_version "1"; transcript_id "ENSMUST00000136025"; transcript_version "1"; exon_number "1"; gene_name "Gm14012"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Gm14012-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSMUSE00000756585"; exon_version "1"; tag "basic"; transcript_support_level "1";
2	havana	exon	128238858	128239058	.	-	.	gene_id "ENSMUSG00000086879"; gene_version "1"; transcript_id "ENSMUST00000136025"; transcript_version "1"; exon_number "2"; gene_name "Gm14012"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Gm14012-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSMUSE00000805740"; exon_version "1"; tag "basic"; transcript_support_level "1";
2	havana	exon	128238028	128238200	.	-	.	gene_id "ENSMUSG00000086879"; gene_version "1"; transcript_id "ENSMUST00000136025"; transcript_version "1"; exon_number "3"; gene_name "Gm14012"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Gm14012-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSMUSE00000818254"; exon_version "1"; tag "basic"; transcript_support_level "1";
2	havana	exon	128237693	128237775	.	-	.	gene_id "ENSMUSG00000086879"; gene_version "1"; transcript_id "ENSMUST00000136025"; transcript_version "1"; exon_number "4"; gene_name "Gm14012"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Gm14012-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSMUSE00000741865"; exon_version "1"; tag "basic"; transcript_support_level "1";
17	havana	transcript	39846958	39848788	.	+	.	gene_id "ENSMUSG00000098178"; gene_version "1"; transcript_id "ENSMUST00000182010"; transcript_version "1"; gene_name "Yam1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Yam1-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "NA";
17	havana	exon	39846958	39848788	.	+	.	gene_id "ENSMUSG00000098178"; gene_version "1"; transcript_id "ENSMUST00000182010"; transcript_version "1"; exon_number "1"; gene_name "Yam1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "Yam1-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSMUSE00001231387"; exon_version "1"; tag "basic"; transcript_support_level "NA";
5	havana	transcript	137134924	137142413	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137142259	137142413	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "1"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00000310616"; exon_version "4"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137142259	137142413	.	-	1	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "1"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137141137	137141205	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "2"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00000487002"; exon_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137141137	137141205	.	-	2	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "2"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137140691	137140853	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "3"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00000488051"; exon_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137140691	137140853	.	-	2	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "3"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137138188	137138349	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "4"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00001307390"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137138188	137138349	.	-	1	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "4"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137137925	137138022	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "5"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00001251017"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137137925	137138022	.	-	1	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "5"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137137057	137137136	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "6"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00001259522"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137137057	137137136	.	-	2	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "6"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	exon	137134924	137135485	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "7"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSMUSE00000869736"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	CDS	137135444	137135485	.	-	0	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; exon_number "7"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSMUSP00000123755"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
5	havana	UTR	137134924	137135443	.	-	.	gene_id "ENSMUSG00000037390"; gene_version "11"; transcript_id "ENSMUST00000160533"; transcript_version "3"; gene_name "Muc3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Muc3-001"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5 (assigned to previous version 2)";
17	ensembl_havana	transcript	27655588	27711106	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27655588	27655759	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "1"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460067"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27701767	27701941	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "2"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460051"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27701888	27701941	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "2"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	start_codon	27701888	27701890	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "2"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27702700	27702856	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "3"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460033"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27702700	27702856	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "3"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27704845	27705080	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "4"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460027"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27704845	27705080	.	+	2	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "4"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27705625	27705780	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460023"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27705625	27705780	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27705917	27706092	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "6"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000460015"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27705917	27706092	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "6"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27706994	27707114	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "7"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000245756"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27706994	27707114	.	+	1	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "7"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27707219	27707346	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "8"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000245736"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27707219	27707346	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "8"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27707880	27708067	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "9"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000459997"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27707880	27708067	.	+	1	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "9"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	exon	27708426	27711106	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "10"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; exon_id "ENSMUSE00000348638"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	CDS	27708426	27708532	.	+	2	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "10"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; protein_id "ENSMUSP00000044168"; protein_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	stop_codon	27708533	27708535	.	+	0	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; exon_number "10"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	UTR	27655588	27655759	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	UTR	27701767	27701887	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
17	ensembl_havana	UTR	27708536	27711106	.	+	.	gene_id "ENSMUSG00000040276"; gene_version "10"; transcript_id "ENSMUST00000045896"; transcript_version "5"; gene_name "Pacsin1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pacsin1-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS28567"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";