# HG changeset patch
# User iuc
# Date 1597300935 14400
# Node ID 21e2f5f97f5dcb679951305abd7f424df234401b
# Parent  55d273c0c574151cec8f2450a414c498a5a29938
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit baafc05b1428cf0ec56a5171c41f2d429a0e0f96"

diff -r 55d273c0c574 -r 21e2f5f97f5d chira_quantify.xml
--- a/chira_quantify.xml	Thu Jul 02 08:55:00 2020 -0400
+++ b/chira_quantify.xml	Thu Aug 13 02:42:15 2020 -0400
@@ -25,7 +25,7 @@
                  Always set this value relative to your sequencing depth. Setting this to lower leads
                  CRLs of random multimappings Also consider setting the --crl_share option
                  along with this"/>
-       <param name="em_threshold" type="float" value="0.1" label="EM threshold"
+       <param name="em_threshold" type="float" value="0.00001" label="EM threshold"
               help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/>
        <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true"
               label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" />
diff -r 55d273c0c574 -r 21e2f5f97f5d macros.xml
--- a/macros.xml	Thu Jul 02 08:55:00 2020 -0400
+++ b/macros.xml	Thu Aug 13 02:42:15 2020 -0400
@@ -1,6 +1,6 @@
 <macros>
     <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy</token>
-    <token name="@TOOL_VERSION@">1.3.7</token>
+    <token name="@TOOL_VERSION@">1.4.0</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">chira</requirement>