Mercurial > repos > iuc > circexplorer2
comparison macros.xml @ 0:465d6578b4d0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circexplorer2 commit fe03991cd7c43f5266314d1fb9e4108f1ab102e8
author | iuc |
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date | Fri, 26 Aug 2022 22:43:38 +0000 (2022-08-26) |
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-1:000000000000 | 0:465d6578b4d0 |
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1 <macros> | |
2 <token name="@TOOL_VERSION@">2.3.8</token> | |
3 <token name="@VERSION_SUFFIX@">0</token> | |
4 <xml name="requirements"> | |
5 <requirements> | |
6 <requirement type="package" version="@TOOL_VERSION@">circexplorer2</requirement> | |
7 </requirements> | |
8 </xml> | |
9 <xml name="xrefs"> | |
10 <xrefs> | |
11 <xref type="bio.tools">circexplorer2</xref> | |
12 </xrefs> | |
13 </xml> | |
14 <xml name="parse_fusion" token_format="" token_label="" token_help=""> | |
15 <param name="fusion_file" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP@"/> | |
16 </xml> | |
17 <xml name="parse_statistics"> | |
18 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" checked="false" | |
19 label="Statistics fragment numbers rather than read numbers"/> | |
20 </xml> | |
21 <xml name="genome_file"> | |
22 <param argument="--genome" type="data" format="fasta" label="Reference genome" help="In FASTA format"/> | |
23 </xml> | |
24 <xml name="annotation_file"> | |
25 <param argument="--ref" type="data" format="txt" label="Gene annotation" | |
26 help="The file is in the format of Gene Predictions and RefSeq Genes with Gene Names" /> | |
27 </xml> | |
28 <xml name="junction_file"> | |
29 <param argument="--bed" type="data" format="bed" label="Back spliced junction file" | |
30 help="This file can be created by CIRCexplorer2 parse or CIRCexplorer2 align" /> | |
31 </xml> | |
32 <xml name="tophat_file"> | |
33 <param argument="--tophat" type="data" format="tgz" label="TopHat alignment file" | |
34 help="Generated by the align module" /> | |
35 </xml> | |
36 <token name="@threads@"><![CDATA[--thread=\${GALAXY_SLOTS:-10}]]></token> | |
37 <xml name="citations"> | |
38 <citations> | |
39 <citation type="doi">10.1101/gr.202895.115</citation> | |
40 </citations> | |
41 </xml> | |
42 </macros> |