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comparison circos.xml @ 10:7f13dc906cb9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 164c36ba98fe4cd293e035efca00a9efa885a7ec"
author iuc
date Mon, 11 Oct 2021 10:09:51 +0000
parents df7356989ac1
children 31a35811dda6
comparison
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9:df7356989ac1 10:7f13dc906cb9
35 ln -s '$reference_genome.ref.genome_fasta' genomeref.fa && 35 ln -s '$reference_genome.ref.genome_fasta' genomeref.fa &&
36 #end if 36 #end if
37 37
38 #if $reference_genome.ref.ref_source in ('lengths', 'cached'): 38 #if $reference_genome.ref.ref_source in ('lengths', 'cached'):
39 python '$__tool_directory__/karyotype-from-lengths.py' 39 python '$__tool_directory__/karyotype-from-lengths.py'
40 #if $reference_genome.ref.ref_source == 'lengths': 40 #if $reference_genome.ref.ref_source == 'lengths'
41 ${reference_genome.ref.input_lengths}' 41 '${reference_genome.ref.input_lengths}'
42 #else 42 #else
43 #if $ideogram.limit_chromosomes: 43 #if $ideogram.limit_chromosomes:
44 ## If they are limiting the chromosomes, ensure they have access to the full list 44 ## If they are limiting the chromosomes, ensure they have access to the full list
45 '${reference_genome.ref.fasta_indexes.fields.len_path}' 45 '${reference_genome.ref.fasta_indexes.fields.len_path}'
46 #else 46 #else