diff resample.xml @ 2:014a21767ac4 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resample.xml	Tue Sep 17 16:54:57 2019 -0400
@@ -0,0 +1,51 @@
+<?xml version="1.0"?>
+<tool id="circos_resample" name="Circos: Resample 1/2D data" version="@WRAPPER_VERSION@">
+    <description>reduce numbers of points in a dataset before plotting</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
+resample
+    -bin '$bins'
+    $method
+    < '$input' | sed 's/ /\t/g' > '$output'
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="tabular" label="1D/2D Data track"/>
+        <param name="bins" type="integer" value="1000000" min="1" label="Bin size" />
+
+        <param name="method" type="select" label="Summarization method">
+            <option value="-avg">[2D] Average</option>
+            <option value="-min">[2D] Minimum value in bin</option>
+            <option value="-max">[2D] Maximum value in bin</option>
+            <option value="-sum">[2D] Sum of values in bin</option>
+            <option value="-count">[1D] Count bins</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="resample/1.tab" ftype="tabular" />
+            <param name="bins" value="10000000" />
+            <output name="output" file="resample/1.out" ftype="tabular" />
+        </test>
+    </tests>
+    <help><![CDATA[
+From the script's documentation:
+
+    The data resolution in a figure is limited by the output print, or screen,
+    resolution and our own visual acuity.
+
+    To read more about how these limits affect figure design, see
+    `this page <http://mkweb.bcgsc.ca/images/resolution/visual-acuity-sequence-visualization.pdf>`__
+
+    This script is designed to convert very high-resolution data tracks to
+    low-resolution equivalents which are easier to interpret and faster to
+    draw.
+
+    ]]></help>
+    <expand macro="citations" />
+</tool>