diff karyotype-from-lengths.py @ 7:4b519282a05b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit ef20b4968a6d00c49209de6b723f8b96d8bd128a"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/karyotype-from-lengths.py	Mon May 25 10:52:02 2020 -0400
@@ -0,0 +1,23 @@
+#!/usr/bin/env python
+import csv
+import sys
+
+
+idx = 0
+with open(sys.argv[1], "r") as csvfile:
+    spamreader = csv.reader(csvfile, delimiter="\t", quotechar='"')
+    for row in spamreader:
+        if len(row) < 2:
+            continue
+
+        seq_id = row[0]
+        length = row[1]
+
+        sys.stdout.write(
+            "chr	-	{seq_id}	{seq_id}	0	{length}	chr{idx}color\n".format(
+                seq_id=seq_id,
+                idx=idx,
+                length=length,
+            )
+        )
+        idx += 1