Mercurial > repos > iuc > circos
view genome-lengths-to-karyotype.py @ 6:740057a5126d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 1584882716a1d2c598e8485da9d73bcf80d9b29a"
author | iuc |
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date | Fri, 01 May 2020 07:28:50 -0400 |
parents | 014a21767ac4 |
children |
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#!/usr/bin/env python import csv import sys idx = 0 with open(sys.argv[1], "r") as csvfile: spamreader = csv.reader(csvfile, delimiter="\t", quotechar='"') for row in spamreader: if len(row) < 2: continue seq_id = row[0] length = row[1] sys.stdout.write( "chr - {seq_id} {seq_id} 0 {length} {theme}-{color}\n".format( seq_id=seq_id, idx=idx, length=length, color=((idx + 1) % 12), theme=sys.argv[2], ) ) idx += 1