# HG changeset patch
# User iuc
# Date 1633946991 0
# Node ID 7f13dc906cb9b134190feb86d700ab0c89b05162
# Parent  df7356989ac1e6cfdd4677925980b4256749d7d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 164c36ba98fe4cd293e035efca00a9efa885a7ec"

diff -r df7356989ac1 -r 7f13dc906cb9 circos.xml
--- a/circos.xml	Mon Nov 23 10:56:29 2020 +0000
+++ b/circos.xml	Mon Oct 11 10:09:51 2021 +0000
@@ -37,8 +37,8 @@
 
 #if $reference_genome.ref.ref_source in ('lengths', 'cached'):
     python '$__tool_directory__/karyotype-from-lengths.py'
-        #if $reference_genome.ref.ref_source == 'lengths':
-            ${reference_genome.ref.input_lengths}'
+        #if $reference_genome.ref.ref_source == 'lengths'
+            '${reference_genome.ref.input_lengths}'
         #else
             #if $ideogram.limit_chromosomes:
                 ## If they are limiting the chromosomes, ensure they have access to the full list
diff -r df7356989ac1 -r 7f13dc906cb9 macros.xml
--- a/macros.xml	Mon Nov 23 10:56:29 2020 +0000
+++ b/macros.xml	Mon Oct 11 10:09:51 2021 +0000
@@ -1,12 +1,13 @@
 <?xml version="1.0"?>
 <macros>
-  <token name="@CIRCOS_VERSION@">0.69.8</token>
+  <token name="@TOOL_VERSION@">0.69.8</token>
+  <token name="@VERSION_SUFFIX@">8</token>
 
-  <token name="@WRAPPER_VERSION@">@CIRCOS_VERSION@+galaxy7</token>
+  <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy@VERSION_SUFFIX@</token>
 
   <xml name="requirements">
       <requirements>
-        <requirement type="package" version="@CIRCOS_VERSION@">circos</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">circos</requirement>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="0.6.4">bcbiogff</requirement>
         <requirement type="package" version="1.70">biopython</requirement>
diff -r df7356989ac1 -r 7f13dc906cb9 test-data/1/links.txt
--- a/test-data/1/links.txt	Mon Nov 23 10:56:29 2020 +0000
+++ b/test-data/1/links.txt	Mon Oct 11 10:09:51 2021 +0000
@@ -1,21 +1,21 @@
-ctgA 0 500 ctgA 1000 1500
-ctgA 2500 3000 ctgA 3500 4000
-ctgA 5000 5500 ctgA 6000 6500
-ctgA 7500 8000 ctgA 8500 9000
-ctgA 10000 10500 ctgA 11000 11500
-ctgA 12500 13000 ctgA 13500 14000
-ctgA 15000 15500 ctgA 16000 16500
-ctgA 17500 18000 ctgA 18500 19000
-ctgA 20000 20500 ctgA 21000 21500
-ctgA 22500 23000 ctgA 23500 24000
-ctgA 25000 25500 ctgA 26000 26500
-ctgA 27500 28000 ctgA 28500 29000
-ctgA 30000 30500 ctgA 31000 31500
-ctgA 32500 33000 ctgA 33500 34000
-ctgA 35000 35500 ctgA 36000 36500
-ctgA 37500 38000 ctgA 38500 39000
-ctgA 40000 40500 ctgA 41000 41500
-ctgA 42500 43000 ctgA 43500 44000
-ctgA 45000 45500 ctgA 46000 46500
-ctgA 47500 48000 ctgA 48500 49000
-ctgA 50000 50500 ctgA 51000 51500
+ctgA	0	500	ctgA	1000	1500
+ctgA	2500	3000	ctgA	3500	4000
+ctgA	5000	5500	ctgA	6000	6500
+ctgA	7500	8000	ctgA	8500	9000
+ctgA	10000	10500	ctgA	11000	11500
+ctgA	12500	13000	ctgA	13500	14000
+ctgA	15000	15500	ctgA	16000	16500
+ctgA	17500	18000	ctgA	18500	19000
+ctgA	20000	20500	ctgA	21000	21500
+ctgA	22500	23000	ctgA	23500	24000
+ctgA	25000	25500	ctgA	26000	26500
+ctgA	27500	28000	ctgA	28500	29000
+ctgA	30000	30500	ctgA	31000	31500
+ctgA	32500	33000	ctgA	33500	34000
+ctgA	35000	35500	ctgA	36000	36500
+ctgA	37500	38000	ctgA	38500	39000
+ctgA	40000	40500	ctgA	41000	41500
+ctgA	42500	43000	ctgA	43500	44000
+ctgA	45000	45500	ctgA	46000	46500
+ctgA	47500	48000	ctgA	48500	49000
+ctgA	50000	50500	ctgA	51000	51500