# HG changeset patch # User iuc # Date 1674057860 0 # Node ID 3df3d1b51110af46f2fe12784f87251dff997176 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/cite_seq_count commit 70fe293f480c4d0e9f14d4373ecac4cbcf4fe17f diff -r 000000000000 -r 3df3d1b51110 cite_seq_count.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cite_seq_count.xml Wed Jan 18 16:04:20 2023 +0000 @@ -0,0 +1,584 @@ + + Count CMO/HTO + + 1.4.4 + 0 + + + topic_3170 + topic_4028 + topic_3308 + + + CITE-seq-Count + + + cite-seq-count + python + umi_tools + python-levenshtein + levenshtein + pandas + umi_tools + + bzip2 + expat + multiprocess + numpy + pysam + scipy + + + + + CITE-seq-Count --version + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + dense + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 10.5281/zenodo.2585469 + + diff -r 000000000000 -r 3df3d1b51110 static/images/read_structure.png Binary file static/images/read_structure.png has changed diff -r 000000000000 -r 3df3d1b51110 test-data/correct_R1.fastq.gz Binary file test-data/correct_R1.fastq.gz has changed diff -r 000000000000 -r 3df3d1b51110 test-data/correct_R2.fastq.gz Binary file test-data/correct_R2.fastq.gz has changed diff -r 000000000000 -r 3df3d1b51110 test-data/incompatible_whitelist.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/incompatible_whitelist.txt Wed Jan 18 16:04:20 2023 +0000 @@ -0,0 +1,2 @@ +AAAAAAAAAAAAAAAA +TTTTTTTTTTTTTTTT diff -r 000000000000 -r 3df3d1b51110 test-data/tags.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tags.csv Wed Jan 18 16:04:20 2023 +0000 @@ -0,0 +1,2 @@ +CGTACGTAGCCTAGC,test2-CGTACGTAGCCTAGC +CGTAGCTCG,test1-CGTAGCTCG diff -r 000000000000 -r 3df3d1b51110 test-data/whitelist.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/whitelist.txt Wed Jan 18 16:04:20 2023 +0000 @@ -0,0 +1,4 @@ +TACATATTCTTTACTG +TAGAGGGAAGTCAAGC +AAAAAAAAAAAAAAAA +TTTTTTTTTTTTTTTT